RNA–Protein interactions for RNA: ENST00000592604.5

SMARCA4-219, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best)

Gene SMARCA4, Length 2,940 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-219ENST00000592604 NUDT12Q9BQG2 462 aa16.37■□□□□ 0.21
SMARCA4-219ENST00000592604 COL16A1Q07092 1604 aaPredicted RBP16.37■□□□□ 0.21
SMARCA4-219ENST00000592604 NDUFAB1O14561 156 aa16.36■□□□□ 0.21
SMARCA4-219ENST00000592604 SLC37A4O43826 429 aa16.36■□□□□ 0.21
SMARCA4-219ENST00000592604 KLRC1P26715 233 aa16.36■□□□□ 0.21
SMARCA4-219ENST00000592604 INPP5BP32019 993 aa16.36■□□□□ 0.21
SMARCA4-219ENST00000592604 CDK8P49336 464 aa16.36■□□□□ 0.21
SMARCA4-219ENST00000592604 KRT79Q5XKE5 535 aa16.36■□□□□ 0.21
SMARCA4-219ENST00000592604 TMC4Q7Z404 712 aa16.36■□□□□ 0.21
SMARCA4-219ENST00000592604 KCNK18Q7Z418 384 aa16.36■□□□□ 0.21
SMARCA4-219ENST00000592604 SH2D3CQ8N5H7 860 aa16.36■□□□□ 0.21
SMARCA4-219ENST00000592604 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP16.36■□□□□ 0.214e-6■■■■■ 29.8
SMARCA4-219ENST00000592604 DNAJC19Q96DA6 116 aa16.36■□□□□ 0.21
SMARCA4-219ENST00000592604 CEP63Q96MT8 703 aa16.36■□□□□ 0.21
SMARCA4-219ENST00000592604 RABEP2Q9H5N1 569 aa16.36■□□□□ 0.21
SMARCA4-219ENST00000592604 LDHCP07864 332 aa16.36■□□□□ 0.21
SMARCA4-219ENST00000592604 MARSP56192 900 aaKnown RBP16.36■□□□□ 0.21
SMARCA4-219ENST00000592604 DIXDC1Q155Q3 683 aa16.36■□□□□ 0.21
SMARCA4-219ENST00000592604 EIF1ADQ8N9N8 165 aaKnown RBP16.36■□□□□ 0.21
SMARCA4-219ENST00000592604 SNX29Q8TEQ0 813 aa16.36■□□□□ 0.21
SMARCA4-219ENST00000592604 CASKIN2Q8WXE0 1202 aa16.36■□□□□ 0.21
SMARCA4-219ENST00000592604 SAMM50Q9Y512 469 aa16.36■□□□□ 0.21
SMARCA4-219ENST00000592604 ZNF335Q9H4Z2 1342 aaPredicted RBP16.36■□□□□ 0.21
SMARCA4-219ENST00000592604 CDK5RAP2Q96SN8 1893 aa16.36■□□□□ 0.21
SMARCA4-219ENST00000592604 ZSCAN5CA6NGD5 496 aaPredicted RBP16.35■□□□□ 0.21
SMARCA4-219ENST00000592604 POTEMA6NI47 508 aa16.35■□□□□ 0.21
SMARCA4-219ENST00000592604 MYBP10242 640 aa16.35■□□□□ 0.21
SMARCA4-219ENST00000592604 KCTD16Q68DU8 428 aa16.35■□□□□ 0.21
SMARCA4-219ENST00000592604 RNPC3Q96LT9 517 aaKnown RBP16.35■□□□□ 0.21
SMARCA4-219ENST00000592604 VAT1LQ9HCJ6 419 aa16.35■□□□□ 0.21
SMARCA4-219ENST00000592604 TMEM59LQ9UK28 342 aa16.35■□□□□ 0.21
SMARCA4-219ENST00000592604 THRAP3Q9Y2W1 955 aaKnown RBP16.35■□□□□ 0.21
SMARCA4-219ENST00000592604 ZNF831Q5JPB2 1677 aa16.35■□□□□ 0.21
SMARCA4-219ENST00000592604 CES2O00748 559 aa16.35■□□□□ 0.21
SMARCA4-219ENST00000592604 TDP2O95551 362 aa16.35■□□□□ 0.21
SMARCA4-219ENST00000592604 GNA14O95837 355 aa16.35■□□□□ 0.21
SMARCA4-219ENST00000592604 TM4SF1P30408 202 aa16.35■□□□□ 0.21
SMARCA4-219ENST00000592604 COASYQ13057 564 aa16.35■□□□□ 0.21
SMARCA4-219ENST00000592604 SWT1Q5T5J6 900 aaKnown RBP16.35■□□□□ 0.21
SMARCA4-219ENST00000592604 MAPKAPK5Q8IW41 473 aa16.35■□□□□ 0.21
SMARCA4-219ENST00000592604 IFT81Q8WYA0 676 aa16.35■□□□□ 0.21
SMARCA4-219ENST00000592604 TBC1D5Q92609 795 aa16.35■□□□□ 0.21
SMARCA4-219ENST00000592604 EPN3Q9H201 632 aa16.35■□□□□ 0.21
SMARCA4-219ENST00000592604 AIPL1Q9NZN9 384 aa16.35■□□□□ 0.21
SMARCA4-219ENST00000592604 ESYT3A0FGR9 886 aa16.35■□□□□ 0.21
SMARCA4-219ENST00000592604 SRRM3A6NNA2 597 aaPredicted RBP16.35■□□□□ 0.21
SMARCA4-219ENST00000592604 TRAF5O00463 557 aa16.35■□□□□ 0.21
SMARCA4-219ENST00000592604 ERCC3P19447 782 aa16.35■□□□□ 0.21
SMARCA4-219ENST00000592604 LSP1P33241 339 aa16.35■□□□□ 0.21
SMARCA4-219ENST00000592604 CCDC40Q4G0X9 1142 aa16.35■□□□□ 0.21
SMARCA4-219ENST00000592604 LINC00116Q8NCU8 138 aa16.35■□□□□ 0.21
SMARCA4-219ENST00000592604 KRT12Q99456 494 aa16.35■□□□□ 0.21
SMARCA4-219ENST00000592604 LSM14BQ9BX40 385 aaKnown RBP16.35■□□□□ 0.21
SMARCA4-219ENST00000592604 SAP30BPQ9UHR5 308 aaKnown RBP16.35■□□□□ 0.21
SMARCA4-219ENST00000592604 BTNL10A8MVZ5 291 aa16.34■□□□□ 0.21
SMARCA4-219ENST00000592604 IRF6O14896 467 aa16.34■□□□□ 0.21
SMARCA4-219ENST00000592604 FTCDO95954 541 aa16.34■□□□□ 0.21
SMARCA4-219ENST00000592604 HSPA9P38646 679 aaKnown RBP16.34■□□□□ 0.21
SMARCA4-219ENST00000592604 ATP1A2P50993 1020 aa16.34■□□□□ 0.21
SMARCA4-219ENST00000592604 POLR2FP61218 127 aaKnown RBP16.34■□□□□ 0.21
SMARCA4-219ENST00000592604 GRIK5Q16478 980 aa16.34■□□□□ 0.21
SMARCA4-219ENST00000592604 TRIM59Q8IWR1 403 aa16.34■□□□□ 0.21
SMARCA4-219ENST00000592604 CEP89Q96ST8 783 aa16.34■□□□□ 0.21
SMARCA4-219ENST00000592604 SPATA31A1Q5TZJ5 1347 aa16.34■□□□□ 0.21
SMARCA4-219ENST00000592604 DDX60LQ5H9U9 1706 aaKnown RBP16.34■□□□□ 0.21
SMARCA4-219ENST00000592604 YTHDF3Q7Z739 585 aaKnown RBP16.34■□□□□ 0.21
SMARCA4-219ENST00000592604 USP38Q8NB14 1042 aa16.34■□□□□ 0.21
SMARCA4-219ENST00000592604 ATP6V1G3Q96LB4 118 aa16.34■□□□□ 0.21
SMARCA4-219ENST00000592604 RTFDC1Q9BY42 306 aaPredicted RBP16.34■□□□□ 0.21
SMARCA4-219ENST00000592604 A0A087X0T9 212 aa16.33■□□□□ 0.21
SMARCA4-219ENST00000592604 HMGB1P1B2RPK0 211 aaPredicted RBP16.33■□□□□ 0.21
SMARCA4-219ENST00000592604 FAM228BP0C875 321 aa16.33■□□□□ 0.21
SMARCA4-219ENST00000592604 NR1D1P20393 614 aa16.33■□□□□ 0.21
SMARCA4-219ENST00000592604 ADCY7P51828 1080 aa16.33■□□□□ 0.21
SMARCA4-219ENST00000592604 FAM26FQ5R3K3 315 aa16.33■□□□□ 0.21
SMARCA4-219ENST00000592604 PPP4R3AQ6IN85 833 aa16.33■□□□□ 0.21
SMARCA4-219ENST00000592604 CEP95Q96GE4 821 aa16.33■□□□□ 0.21
SMARCA4-219ENST00000592604 UBA5Q9GZZ9 404 aa16.33■□□□□ 0.21
SMARCA4-219ENST00000592604 SBF2Q86WG5 1849 aa16.33■□□□□ 0.21
SMARCA4-219ENST00000592604 MEFVO15553 781 aaPredicted RBP16.33■□□□□ 0.2
SMARCA4-219ENST00000592604 TNNC1P63316 161 aa16.33■□□□□ 0.2
SMARCA4-219ENST00000592604 ECM1Q16610 540 aa16.33■□□□□ 0.2
SMARCA4-219ENST00000592604 KIAA0753Q2KHM9 967 aa16.33■□□□□ 0.2
SMARCA4-219ENST00000592604 MCTP2Q6DN12 878 aa16.33■□□□□ 0.2
SMARCA4-219ENST00000592604 PANK4Q9NVE7 773 aa16.33■□□□□ 0.2
SMARCA4-219ENST00000592604 COL24A1Q17RW2 1714 aa16.33■□□□□ 0.2
SMARCA4-219ENST00000592604 USP17L5A8MUK1 530 aa16.32■□□□□ 0.2
SMARCA4-219ENST00000592604 PPP1R37O75864 691 aa16.32■□□□□ 0.2
SMARCA4-219ENST00000592604 HNRNPH1P31943 449 aaKnown RBP16.32■□□□□ 0.2
SMARCA4-219ENST00000592604 GUCY2FP51841 1108 aa16.32■□□□□ 0.2
SMARCA4-219ENST00000592604 HYIQ5T013 277 aa16.32■□□□□ 0.2
SMARCA4-219ENST00000592604 ZC3H3Q8IXZ2 948 aaKnown RBP16.32■□□□□ 0.2
SMARCA4-219ENST00000592604 ISCUQ9H1K1 167 aa16.32■□□□□ 0.2
SMARCA4-219ENST00000592604 PCDHA2Q9Y5H9 948 aa16.32■□□□□ 0.2
SMARCA4-219ENST00000592604 RAD51CO43502 376 aa16.32■□□□□ 0.2
SMARCA4-219ENST00000592604 FSBPO95073 299 aa16.32■□□□□ 0.2
SMARCA4-219ENST00000592604 FNTAP49354 379 aa16.32■□□□□ 0.2
SMARCA4-219ENST00000592604 GUCY1A3Q02108 690 aa16.32■□□□□ 0.2
SMARCA4-219ENST00000592604 PTGISQ16647 500 aa16.32■□□□□ 0.2
SMARCA4-219ENST00000592604 C10orf76Q5T2E6 689 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms