RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 SLC39A2Q9NP94 309 aa12.53□□□□□ -0.4
LIG3-204ENST00000585740 ZNF112Q9UJU3 913 aa12.53□□□□□ -0.4
LIG3-204ENST00000585740 CCPG1Q9ULG6 757 aa12.53□□□□□ -0.4
LIG3-204ENST00000585740 CTDP1Q9Y5B0 961 aaPredicted RBP12.53□□□□□ -0.4
LIG3-204ENST00000585740 POTEB3A0JP26 581 aa12.52□□□□□ -0.41
LIG3-204ENST00000585740 SHTN1A0MZ66 631 aa12.52□□□□□ -0.41
LIG3-204ENST00000585740 FRMD3A2A2Y4 597 aa12.52□□□□□ -0.41
LIG3-204ENST00000585740 RIOK3O14730 519 aaKnown RBP12.52□□□□□ -0.41
LIG3-204ENST00000585740 COBLO75128 1261 aa12.52□□□□□ -0.41
LIG3-204ENST00000585740 MED24O75448 989 aa12.52□□□□□ -0.41
LIG3-204ENST00000585740 SSBP05455 408 aaKnown RBP eCLIP12.52□□□□□ -0.41
LIG3-204ENST00000585740 KRT18P05783 430 aaKnown RBP12.52□□□□□ -0.41
LIG3-204ENST00000585740 VEGFBP49765 207 aa12.52□□□□□ -0.41
LIG3-204ENST00000585740 HSD17B4P51659 736 aa12.52□□□□□ -0.41
LIG3-204ENST00000585740 PMS1P54277 932 aaKnown RBP12.52□□□□□ -0.41
LIG3-204ENST00000585740 SYCP1Q15431 976 aa12.52□□□□□ -0.41
LIG3-204ENST00000585740 TSR1Q2NL82 804 aaKnown RBP12.52□□□□□ -0.41
LIG3-204ENST00000585740 TBC1D10BQ4KMP7 808 aaPredicted RBP12.52□□□□□ -0.41
LIG3-204ENST00000585740 FKBP15Q5T1M5 1219 aa12.52□□□□□ -0.41
LIG3-204ENST00000585740 POTEBQ6S5H4 581 aa12.52□□□□□ -0.41
LIG3-204ENST00000585740 NIPA1Q7RTP0 329 aa12.52□□□□□ -0.41
LIG3-204ENST00000585740 CREBRFQ8IUR6 639 aa12.52□□□□□ -0.41
LIG3-204ENST00000585740 SCYL3Q8IZE3 742 aa12.52□□□□□ -0.41
LIG3-204ENST00000585740 SYT2Q8N9I0 419 aaPredicted RBP12.52□□□□□ -0.41
LIG3-204ENST00000585740 NEK9Q8TD19 979 aa12.52□□□□□ -0.41
LIG3-204ENST00000585740 SLC5A5Q92911 643 aa12.52□□□□□ -0.41
LIG3-204ENST00000585740 ABHD8Q96I13 439 aa12.52□□□□□ -0.41
LIG3-204ENST00000585740 CNOT6LQ96LI5 555 aaKnown RBP12.52□□□□□ -0.41
LIG3-204ENST00000585740 PCDH10Q9P2E7 1040 aa12.52□□□□□ -0.41
LIG3-204ENST00000585740 VAV3Q9UKW4 847 aa12.52□□□□□ -0.41
LIG3-204ENST00000585740 PARP14Q460N5 1801 aa12.52□□□□□ -0.41
LIG3-204ENST00000585740 IGLV3-22A0A075B6J6 115 aa12.51□□□□□ -0.41
LIG3-204ENST00000585740 E9PMD0 336 aa12.51□□□□□ -0.41
LIG3-204ENST00000585740 ZBED4O75132 1171 aa12.51□□□□□ -0.41
LIG3-204ENST00000585740 EYA4O95677 639 aa12.51□□□□□ -0.41
LIG3-204ENST00000585740 GNA14O95837 355 aa12.51□□□□□ -0.41
LIG3-204ENST00000585740 GYPCP04921 128 aa12.51□□□□□ -0.41
LIG3-204ENST00000585740 BCRP11274 1271 aa12.51□□□□□ -0.41
LIG3-204ENST00000585740 PRKCSHP14314 528 aaPredicted RBP12.51□□□□□ -0.41
LIG3-204ENST00000585740 CYP11B2P19099 503 aa12.51□□□□□ -0.41
LIG3-204ENST00000585740 INPP5BP32019 993 aa12.51□□□□□ -0.41
LIG3-204ENST00000585740 STAT3P40763 770 aa12.51□□□□□ -0.41
LIG3-204ENST00000585740 SLC12A3P55017 1021 aa12.51□□□□□ -0.41
LIG3-204ENST00000585740 PPP2R5CQ13362 524 aa12.51□□□□□ -0.41
LIG3-204ENST00000585740 CEP55Q53EZ4 464 aa12.51□□□□□ -0.41
LIG3-204ENST00000585740 LRCH2Q5VUJ6 765 aa12.51□□□□□ -0.41
LIG3-204ENST00000585740 PPP4R3CPQ6ZMV5 832 aa12.51□□□□□ -0.41
LIG3-204ENST00000585740 SAMD7Q7Z3H4 446 aa12.51□□□□□ -0.41
LIG3-204ENST00000585740 CATSPER3Q86XQ3 398 aa12.51□□□□□ -0.41
LIG3-204ENST00000585740 ZNF507Q8TCN5 953 aa12.51□□□□□ -0.41
LIG3-204ENST00000585740 CEP63Q96MT8 703 aa12.51□□□□□ -0.41
LIG3-204ENST00000585740 GLIS2Q9BZE0 524 aaPredicted RBP12.51□□□□□ -0.41
LIG3-204ENST00000585740 MAF1Q9H063 256 aa12.51□□□□□ -0.41
LIG3-204ENST00000585740 SEMA6BQ9H3T3 888 aa12.51□□□□□ -0.41
LIG3-204ENST00000585740 SLC38A10Q9HBR0 1119 aa12.51□□□□□ -0.41
LIG3-204ENST00000585740 PICK1Q9NRD5 415 aa12.51□□□□□ -0.41
LIG3-204ENST00000585740 PPP1R9AQ9ULJ8 1098 aa12.51□□□□□ -0.41
LIG3-204ENST00000585740 PPP2R2CQ9Y2T4 447 aa12.51□□□□□ -0.41
LIG3-204ENST00000585740 PHLPP2Q6ZVD8 1323 aa12.51□□□□□ -0.41
LIG3-204ENST00000585740 PES1O00541 588 aaKnown RBP12.5□□□□□ -0.41
LIG3-204ENST00000585740 CCDC175P0C221 793 aa12.5□□□□□ -0.41
LIG3-204ENST00000585740 CASP14P31944 242 aa12.5□□□□□ -0.41
LIG3-204ENST00000585740 ETF1P62495 437 aaKnown RBP12.5□□□□□ -0.41
LIG3-204ENST00000585740 GOLGA8FQ08AF8 430 aa12.5□□□□□ -0.41
LIG3-204ENST00000585740 GOLGA8DPQ0D2H9 430 aa12.5□□□□□ -0.41
LIG3-204ENST00000585740 TBC1D8BQ0IIM8 1120 aa12.5□□□□□ -0.41
LIG3-204ENST00000585740 MAN2A1Q16706 1144 aa12.5□□□□□ -0.41
LIG3-204ENST00000585740 PTPN21Q16825 1174 aa12.5□□□□□ -0.41
LIG3-204ENST00000585740 FIGNQ5HY92 759 aa12.5□□□□□ -0.41
LIG3-204ENST00000585740 CYP26C1Q6V0L0 522 aa12.5□□□□□ -0.41
LIG3-204ENST00000585740 REXO1L1PQ8IX06 675 aa12.5□□□□□ -0.41
LIG3-204ENST00000585740 ZNF592Q92610 1267 aa12.5□□□□□ -0.41
LIG3-204ENST00000585740 GJA10Q969M2 543 aa12.5□□□□□ -0.41
LIG3-204ENST00000585740 C12orf42Q96LP6 360 aa12.5□□□□□ -0.41
LIG3-204ENST00000585740 ERGIC2Q96RQ1 377 aa12.5□□□□□ -0.41
LIG3-204ENST00000585740 EIF2AK1Q9BQI3 630 aaKnown RBP12.5□□□□□ -0.41
LIG3-204ENST00000585740 NOC4LQ9BVI4 516 aaKnown RBP12.5□□□□□ -0.41
LIG3-204ENST00000585740 TEKT3Q9BXF9 490 aa12.5□□□□□ -0.41
LIG3-204ENST00000585740 FBXO28Q9NVF7 368 aa12.5□□□□□ -0.41
LIG3-204ENST00000585740 WBP1LQ9NX94 342 aa12.5□□□□□ -0.41
LIG3-204ENST00000585740 RPTORQ8N122 1335 aa12.5□□□□□ -0.41
LIG3-204ENST00000585740 PHIPQ8WWQ0 1821 aa12.49□□□□□ -0.41
LIG3-204ENST00000585740 ZNF536O15090 1300 aa12.49□□□□□ -0.41
LIG3-204ENST00000585740 PASKQ96RG2 1323 aa12.49□□□□□ -0.41
LIG3-204ENST00000585740 ZNF541Q9H0D2 1346 aa12.49□□□□□ -0.41
LIG3-204ENST00000585740 POTEFA5A3E0 1075 aa12.49□□□□□ -0.41
LIG3-204ENST00000585740 C19orf81C9J6K1 198 aa12.49□□□□□ -0.41
LIG3-204ENST00000585740 MEIS1O00470 390 aa12.49□□□□□ -0.41
LIG3-204ENST00000585740 GAS7O60861 476 aa12.49□□□□□ -0.41
LIG3-204ENST00000585740 PSMD10O75832 226 aa12.49□□□□□ -0.41
LIG3-204ENST00000585740 DDNO94850 711 aaPredicted RBP12.49□□□□□ -0.41
LIG3-204ENST00000585740 EGFRP00533 1210 aa12.49□□□□□ -0.41
LIG3-204ENST00000585740 SPATA31C1P0DKV0 1188 aa12.49□□□□□ -0.41
LIG3-204ENST00000585740 GAP43P17677 238 aa12.49□□□□□ -0.41
LIG3-204ENST00000585740 FKBP3Q00688 224 aaKnown RBP12.49□□□□□ -0.41
LIG3-204ENST00000585740 EPHA7Q15375 998 aa12.49□□□□□ -0.41
LIG3-204ENST00000585740 HERC4Q5GLZ8 1057 aaPredicted RBP12.49□□□□□ -0.41
LIG3-204ENST00000585740 POTEGQ6S5H5 508 aa12.49□□□□□ -0.41
LIG3-204ENST00000585740 POTEEQ6S8J3 1075 aa12.49□□□□□ -0.41
LIG3-204ENST00000585740 OTOP1Q7RTM1 612 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms