RNA–Protein interactions for RNA: ENST00000574755.5

VPS33B-208, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 2,356 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-208ENST00000574755 PHF20L1A8MW92 1017 aa15.6■□□□□ 0.09
VPS33B-208ENST00000574755 ZNF280AP59817 542 aaPredicted RBP15.6■□□□□ 0.09
VPS33B-208ENST00000574755 PSMC6P62333 389 aa15.6■□□□□ 0.09
VPS33B-208ENST00000574755 UBXN2AP68543 259 aa15.6■□□□□ 0.09
VPS33B-208ENST00000574755 CYP4A11Q02928 519 aa15.6■□□□□ 0.09
VPS33B-208ENST00000574755 PABPC4Q13310 644 aaKnown RBP eCLIP15.6■□□□□ 0.096e-11■■■■□ 25.6
VPS33B-208ENST00000574755 LDHDQ86WU2 507 aa15.6■□□□□ 0.09
VPS33B-208ENST00000574755 EHMT1Q9H9B1 1298 aa15.6■□□□□ 0.09
VPS33B-208ENST00000574755 NOL12Q9UGY1 213 aaKnown RBP eCLIP15.6■□□□□ 0.09
VPS33B-208ENST00000574755 V9GYY5 206 aaPredicted RBP15.6■□□□□ 0.09
VPS33B-208ENST00000574755 PITPNM2Q9BZ72 1349 aa15.6■□□□□ 0.09
VPS33B-208ENST00000574755 RPS12P25398 132 aaKnown RBP15.6■□□□□ 0.09
VPS33B-208ENST00000574755 KLK7P49862 253 aa15.6■□□□□ 0.09
VPS33B-208ENST00000574755 ARSHQ5FYA8 562 aa15.6■□□□□ 0.09
VPS33B-208ENST00000574755 RETREG2Q8NC44 543 aa15.6■□□□□ 0.09
VPS33B-208ENST00000574755 ACRBPQ8NEB7 543 aa15.6■□□□□ 0.09
VPS33B-208ENST00000574755 TEPSINQ96N21 525 aa15.6■□□□□ 0.09
VPS33B-208ENST00000574755 DNAJC7Q99615 494 aa15.6■□□□□ 0.09
VPS33B-208ENST00000574755 VWA3BQ502W6 1294 aa15.59■□□□□ 0.09
VPS33B-208ENST00000574755 LRRC55Q6ZSA7 311 aa15.59■□□□□ 0.09
VPS33B-208ENST00000574755 MICALL2Q8IY33 904 aa15.59■□□□□ 0.09
VPS33B-208ENST00000574755 ERGIC2Q96RQ1 377 aa15.59■□□□□ 0.09
VPS33B-208ENST00000574755 CHP1Q99653 195 aa15.59■□□□□ 0.09
VPS33B-208ENST00000574755 WDR18Q9BV38 432 aa15.59■□□□□ 0.09
VPS33B-208ENST00000574755 FGFBP2Q9BYJ0 223 aa15.59■□□□□ 0.09
VPS33B-208ENST00000574755 NDST4Q9H3R1 872 aa15.59■□□□□ 0.09
VPS33B-208ENST00000574755 A0A0U1RQJ8 604 aa15.58■□□□□ 0.09
VPS33B-208ENST00000574755 INPP5BP32019 993 aa15.58■□□□□ 0.09
VPS33B-208ENST00000574755 FKBP3Q00688 224 aaKnown RBP15.58■□□□□ 0.09
VPS33B-208ENST00000574755 MAN2A1Q16706 1144 aa15.58■□□□□ 0.09
VPS33B-208ENST00000574755 KIF4BQ2VIQ3 1234 aa15.58■□□□□ 0.09
VPS33B-208ENST00000574755 ARHGAP29Q52LW3 1261 aa15.58■□□□□ 0.09
VPS33B-208ENST00000574755 LRCH2Q5VUJ6 765 aa15.58■□□□□ 0.09
VPS33B-208ENST00000574755 FOXR2Q6PJQ5 311 aa15.58■□□□□ 0.09
VPS33B-208ENST00000574755 SAMD7Q7Z3H4 446 aa15.58■□□□□ 0.09
VPS33B-208ENST00000574755 PDCL2Q8N4E4 241 aa15.58■□□□□ 0.09
VPS33B-208ENST00000574755 SYT2Q8N9I0 419 aaPredicted RBP15.58■□□□□ 0.09
VPS33B-208ENST00000574755 ATRIPQ8WXE1 791 aa15.58■□□□□ 0.09
VPS33B-208ENST00000574755 EIF2AK1Q9BQI3 630 aaKnown RBP15.58■□□□□ 0.09
VPS33B-208ENST00000574755 IRX2Q9BZI1 471 aaPredicted RBP15.58■□□□□ 0.09
VPS33B-208ENST00000574755 TTYH3Q9C0H2 523 aa15.58■□□□□ 0.09
VPS33B-208ENST00000574755 AGPAT5Q9NUQ2 364 aa15.58■□□□□ 0.09
VPS33B-208ENST00000574755 CCPG1Q9ULG6 757 aa15.58■□□□□ 0.09
VPS33B-208ENST00000574755 PCDHA2Q9Y5H9 948 aa15.58■□□□□ 0.09
VPS33B-208ENST00000574755 GJA3Q9Y6H8 435 aa15.58■□□□□ 0.09
VPS33B-208ENST00000574755 TRAF5O00463 557 aa15.58■□□□□ 0.08
VPS33B-208ENST00000574755 ERCC3P19447 782 aa15.58■□□□□ 0.08
VPS33B-208ENST00000574755 PTGER2P43116 358 aa15.58■□□□□ 0.08
VPS33B-208ENST00000574755 ZCWPW2Q504Y3 356 aa15.58■□□□□ 0.08
VPS33B-208ENST00000574755 NELFCDQ8IXH7 590 aa15.58■□□□□ 0.08
VPS33B-208ENST00000574755 AGBL1Q96MI9 1066 aa15.58■□□□□ 0.08
VPS33B-208ENST00000574755 FRMD3A2A2Y4 597 aa15.57■□□□□ 0.08
VPS33B-208ENST00000574755 EML1O00423 815 aa15.57■□□□□ 0.08
VPS33B-208ENST00000574755 KIF5CO60282 957 aa15.57■□□□□ 0.08
VPS33B-208ENST00000574755 KIF20AO95235 890 aa15.57■□□□□ 0.08
VPS33B-208ENST00000574755 ICAM1P05362 532 aa15.57■□□□□ 0.08
VPS33B-208ENST00000574755 GMPSP49915 693 aaPredicted RBP15.57■□□□□ 0.08
VPS33B-208ENST00000574755 TBC1D10BQ4KMP7 808 aaPredicted RBP15.57■□□□□ 0.08
VPS33B-208ENST00000574755 PRPF38AQ8NAV1 312 aaKnown RBP15.57■□□□□ 0.08
VPS33B-208ENST00000574755 LPAR1Q92633 364 aa15.57■□□□□ 0.08
VPS33B-208ENST00000574755 SLF1Q9BQI6 1058 aa15.57■□□□□ 0.08
VPS33B-208ENST00000574755 POLR3CQ9BUI4 534 aaPredicted RBP15.57■□□□□ 0.08
VPS33B-208ENST00000574755 BHMT2Q9H2M3 363 aa15.57■□□□□ 0.08
VPS33B-208ENST00000574755 EMILIN3Q9NT22 766 aa15.57■□□□□ 0.08
VPS33B-208ENST00000574755 RGL1Q9NZL6 768 aa15.57■□□□□ 0.08
VPS33B-208ENST00000574755 RASSF10A6NK89 507 aa15.57■□□□□ 0.08
VPS33B-208ENST00000574755 WDR46O15213 610 aaKnown RBP15.57■□□□□ 0.08
VPS33B-208ENST00000574755 CHMP2AO43633 222 aa15.57■□□□□ 0.08
VPS33B-208ENST00000574755 GIT2Q14161 759 aa15.57■□□□□ 0.08
VPS33B-208ENST00000574755 CEP55Q53EZ4 464 aa15.57■□□□□ 0.08
VPS33B-208ENST00000574755 SLC30A10Q6XR72 485 aa15.57■□□□□ 0.08
VPS33B-208ENST00000574755 OTOP1Q7RTM1 612 aa15.57■□□□□ 0.08
VPS33B-208ENST00000574755 SCFD1Q8WVM8 642 aa15.57■□□□□ 0.08
VPS33B-208ENST00000574755 ZFP91Q96JP5 570 aaPredicted RBP15.57■□□□□ 0.08
VPS33B-208ENST00000574755 REEP2Q9BRK0 252 aa15.57■□□□□ 0.08
VPS33B-208ENST00000574755 ZNHIT6Q9NWK9 470 aaKnown RBP15.57■□□□□ 0.08
VPS33B-208ENST00000574755 HACL1Q9UJ83 578 aa15.57■□□□□ 0.08
VPS33B-208ENST00000574755 RABGAP1Q9Y3P9 1069 aa15.57■□□□□ 0.08
VPS33B-208ENST00000574755 EPN1Q9Y6I3 576 aaPredicted RBP15.57■□□□□ 0.08
VPS33B-208ENST00000574755 ASTN2O75129 1339 aaPredicted RBP15.56■□□□□ 0.08
VPS33B-208ENST00000574755 PSMD10O75832 226 aa15.56■□□□□ 0.08
VPS33B-208ENST00000574755 NDUFA10O95299 355 aa15.56■□□□□ 0.08
VPS33B-208ENST00000574755 ZBED6P86452 979 aa15.56■□□□□ 0.08
VPS33B-208ENST00000574755 RASSF7Q02833 373 aa15.56■□□□□ 0.08
VPS33B-208ENST00000574755 ELF2Q15723 593 aa15.56■□□□□ 0.08
VPS33B-208ENST00000574755 FIGNQ5HY92 759 aa15.56■□□□□ 0.08
VPS33B-208ENST00000574755 WDR59Q6PJI9 974 aa15.56■□□□□ 0.08
VPS33B-208ENST00000574755 ZNF397Q8NF99 534 aaPredicted RBP15.56■□□□□ 0.08
VPS33B-208ENST00000574755 CNOT7Q9UIV1 285 aaKnown RBP15.56■□□□□ 0.08
VPS33B-208ENST00000574755 COL4A3BPQ9Y5P4 624 aa15.56■□□□□ 0.08
VPS33B-208ENST00000574755 ZNF536O15090 1300 aa15.56■□□□□ 0.08
VPS33B-208ENST00000574755 CTNND1O60716 968 aaKnown RBP15.56■□□□□ 0.08
VPS33B-208ENST00000574755 GAS7O60861 476 aa15.56■□□□□ 0.08
VPS33B-208ENST00000574755 CCDC40Q4G0X9 1142 aa15.56■□□□□ 0.08
VPS33B-208ENST00000574755 LRRN4CLQ8ND94 238 aa15.56■□□□□ 0.08
VPS33B-208ENST00000574755 MNS1Q8NEH6 495 aa15.56■□□□□ 0.08
VPS33B-208ENST00000574755 HOOK2Q96ED9 719 aa15.56■□□□□ 0.08
VPS33B-208ENST00000574755 ARID3AQ99856 593 aa15.56■□□□□ 0.08
VPS33B-208ENST00000574755 TANGO6Q9C0B7 1094 aa15.56■□□□□ 0.08
VPS33B-208ENST00000574755 KIAA1683Q9H0B3 1180 aa15.56■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms