RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 CDC37Q16543 378 aaPredicted RBP16.69■□□□□ 0.26
CIITA-204ENST00000570546 SYDE2Q5VT97 1194 aa16.69■□□□□ 0.26
CIITA-204ENST00000570546 E4F1Q66K89 784 aaPredicted RBP16.69■□□□□ 0.26
CIITA-204ENST00000570546 GLG1Q92896 1179 aa16.69■□□□□ 0.26
CIITA-204ENST00000570546 CEP72Q9P209 647 aa16.69■□□□□ 0.26
CIITA-204ENST00000570546 ECM2O94769 699 aaPredicted RBP16.69■□□□□ 0.26
CIITA-204ENST00000570546 TMC4Q7Z404 712 aa16.69■□□□□ 0.26
CIITA-204ENST00000570546 DCP1AQ9NPI6 582 aaPredicted RBP16.69■□□□□ 0.26
CIITA-204ENST00000570546 ADAMTS1Q9UHI8 967 aa16.69■□□□□ 0.26
CIITA-204ENST00000570546 MYO1FO00160 1098 aa16.69■□□□□ 0.26
CIITA-204ENST00000570546 BMP3P12645 472 aa16.69■□□□□ 0.26
CIITA-204ENST00000570546 PRKG1Q13976 671 aa16.69■□□□□ 0.26
CIITA-204ENST00000570546 CSRNP1Q96S65 589 aa16.69■□□□□ 0.26
CIITA-204ENST00000570546 AS3MTQ9HBK9 375 aa16.69■□□□□ 0.26
CIITA-204ENST00000570546 TRPC6Q9Y210 931 aa16.69■□□□□ 0.26
CIITA-204ENST00000570546 CLEC11AQ9Y240 323 aa16.69■□□□□ 0.26
CIITA-204ENST00000570546 LRRC53A6NM62 1247 aa16.69■□□□□ 0.26
CIITA-204ENST00000570546 CLTAP09496 248 aa16.69■□□□□ 0.26
CIITA-204ENST00000570546 CYP19A1P11511 503 aaPredicted RBP16.69■□□□□ 0.26
CIITA-204ENST00000570546 BPIFB4P59827 614 aa16.69■□□□□ 0.26
CIITA-204ENST00000570546 KRT81Q14533 505 aa16.69■□□□□ 0.26
CIITA-204ENST00000570546 GPR101Q96P66 508 aaPredicted RBP16.69■□□□□ 0.26
CIITA-204ENST00000570546 TRIM6Q9C030 488 aaPredicted RBP16.69■□□□□ 0.26
CIITA-204ENST00000570546 UBE2TQ9NPD8 197 aaPredicted RBP16.69■□□□□ 0.26
CIITA-204ENST00000570546 TAF6LQ9Y6J9 622 aa16.69■□□□□ 0.26
CIITA-204ENST00000570546 USP17L5A8MUK1 530 aa16.68■□□□□ 0.26
CIITA-204ENST00000570546 PALMO75781 387 aa16.68■□□□□ 0.26
CIITA-204ENST00000570546 MAPK4P31152 587 aa16.68■□□□□ 0.26
CIITA-204ENST00000570546 GRM4Q14833 912 aa16.68■□□□□ 0.26
CIITA-204ENST00000570546 GLE1Q53GS7 698 aaKnown RBP16.68■□□□□ 0.26
CIITA-204ENST00000570546 FAM196AQ6ZSG2 479 aa16.68■□□□□ 0.26
CIITA-204ENST00000570546 RILPQ96NA2 401 aa16.68■□□□□ 0.26
CIITA-204ENST00000570546 ANO3Q9BYT9 981 aa16.68■□□□□ 0.26
CIITA-204ENST00000570546 SETD1BQ9UPS6 1966 aaKnown RBP16.68■□□□□ 0.26
CIITA-204ENST00000570546 ECEL1O95672 775 aa16.68■□□□□ 0.26
CIITA-204ENST00000570546 TNNC2P02585 160 aa16.68■□□□□ 0.26
CIITA-204ENST00000570546 WDR24Q96S15 920 aa16.68■□□□□ 0.26
CIITA-204ENST00000570546 TMEM206Q9H813 350 aa16.68■□□□□ 0.26
CIITA-204ENST00000570546 PARVGQ9HBI0 331 aa16.68■□□□□ 0.26
CIITA-204ENST00000570546 PNPLA7Q6ZV29 1317 aa16.68■□□□□ 0.26
CIITA-204ENST00000570546 SUN1O94901 812 aa16.68■□□□□ 0.26
CIITA-204ENST00000570546 ATP2C1P98194 919 aaPredicted RBP16.68■□□□□ 0.26
CIITA-204ENST00000570546 BRINP3Q76B58 766 aa16.68■□□□□ 0.26
CIITA-204ENST00000570546 SDCCAG8Q86SQ7 713 aaPredicted RBP16.68■□□□□ 0.26
CIITA-204ENST00000570546 ZBTB8OSQ8IWT0 167 aa16.68■□□□□ 0.26
CIITA-204ENST00000570546 RAD54LQ92698 747 aa16.68■□□□□ 0.26
CIITA-204ENST00000570546 POTEMA6NI47 508 aa16.68■□□□□ 0.26
CIITA-204ENST00000570546 SNX1Q13596 522 aa16.68■□□□□ 0.26
CIITA-204ENST00000570546 CUL1Q13616 776 aa16.68■□□□□ 0.26
CIITA-204ENST00000570546 TNFAIP1Q13829 316 aa16.68■□□□□ 0.26
CIITA-204ENST00000570546 MLXIPQ9HAP2 919 aa16.68■□□□□ 0.26
CIITA-204ENST00000570546 CLTCQ00610 1675 aaKnown RBP16.68■□□□□ 0.26
CIITA-204ENST00000570546 HNRNPDLO14979 420 aaKnown RBP16.67■□□□□ 0.26
CIITA-204ENST00000570546 KCNJ6P48051 423 aa16.67■□□□□ 0.26
CIITA-204ENST00000570546 POLGP54098 1239 aaPredicted RBP16.67■□□□□ 0.26
CIITA-204ENST00000570546 CCDC38Q502W7 563 aa16.67■□□□□ 0.26
CIITA-204ENST00000570546 SGO2Q562F6 1265 aa16.67■□□□□ 0.26
CIITA-204ENST00000570546 ALKBH5Q6P6C2 394 aaKnown RBP16.67■□□□□ 0.26
CIITA-204ENST00000570546 TRIM11Q96F44 468 aa16.67■□□□□ 0.26
CIITA-204ENST00000570546 TTC26A0AVF1 554 aa16.67■□□□□ 0.26
CIITA-204ENST00000570546 APBA3O96018 575 aa16.67■□□□□ 0.26
CIITA-204ENST00000570546 SPZ1Q9BXG8 430 aa16.67■□□□□ 0.26
CIITA-204ENST00000570546 CNOT10Q9H9A5 744 aaKnown RBP16.67■□□□□ 0.26
CIITA-204ENST00000570546 ANKFY1Q9P2R3 1169 aa16.67■□□□□ 0.26
CIITA-204ENST00000570546 NOVA2Q9UNW9 492 aaKnown RBP16.67■□□□□ 0.26
CIITA-204ENST00000570546 EPB41L3Q9Y2J2 1087 aaPredicted RBP16.67■□□□□ 0.26
CIITA-204ENST00000570546 HSPA6P17066 643 aa16.67■□□□□ 0.26
CIITA-204ENST00000570546 DR1Q01658 176 aa16.67■□□□□ 0.26
CIITA-204ENST00000570546 MTF1Q14872 753 aa16.67■□□□□ 0.26
CIITA-204ENST00000570546 PROM2Q8N271 834 aa16.67■□□□□ 0.26
CIITA-204ENST00000570546 CPVLQ9H3G5 476 aa16.67■□□□□ 0.26
CIITA-204ENST00000570546 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.67■□□□□ 0.26
CIITA-204ENST00000570546 USP32Q8NFA0 1604 aa16.67■□□□□ 0.26
CIITA-204ENST00000570546 HMGB1P1B2RPK0 211 aaPredicted RBP16.67■□□□□ 0.26
CIITA-204ENST00000570546 PPP2R5DQ14738 602 aa16.67■□□□□ 0.26
CIITA-204ENST00000570546 TMED8Q6PL24 325 aaPredicted RBP16.67■□□□□ 0.26
CIITA-204ENST00000570546 DHX36Q9H2U1 1008 aaKnown RBP16.67■□□□□ 0.26
CIITA-204ENST00000570546 PCDHB4Q9Y5E5 795 aa16.67■□□□□ 0.26
CIITA-204ENST00000570546 FRMPD1Q5SYB0 1578 aa16.67■□□□□ 0.26
CIITA-204ENST00000570546 DIP2CQ9Y2E4 1556 aa16.67■□□□□ 0.26
CIITA-204ENST00000570546 LRRIQ4A6NIV6 560 aa16.66■□□□□ 0.26
CIITA-204ENST00000570546 HIP1RO75146 1068 aa16.66■□□□□ 0.26
CIITA-204ENST00000570546 LMNB2Q03252 620 aa16.66■□□□□ 0.26
CIITA-204ENST00000570546 GFPT1Q06210 699 aaPredicted RBP16.66■□□□□ 0.26
CIITA-204ENST00000570546 TXNRD1Q16881 649 aa16.66■□□□□ 0.26
CIITA-204ENST00000570546 TBC1D10BQ4KMP7 808 aaPredicted RBP16.66■□□□□ 0.26
CIITA-204ENST00000570546 LRRC8CQ8TDW0 803 aa16.66■□□□□ 0.26
CIITA-204ENST00000570546 VCXQ9H320 206 aa16.66■□□□□ 0.26
CIITA-204ENST00000570546 PNMA2Q9UL42 364 aa16.66■□□□□ 0.26
CIITA-204ENST00000570546 PVALEFA0A1B0GWK0 134 aa16.66■□□□□ 0.26
CIITA-204ENST00000570546 GGCXP38435 758 aa16.66■□□□□ 0.26
CIITA-204ENST00000570546 IL9RQ01113 521 aa16.66■□□□□ 0.26
CIITA-204ENST00000570546 PLA2G12BQ9BX93 195 aa16.66■□□□□ 0.26
CIITA-204ENST00000570546 PP2D1A8MPX8 630 aa16.66■□□□□ 0.26
CIITA-204ENST00000570546 CTNND1O60716 968 aaKnown RBP16.66■□□□□ 0.26
CIITA-204ENST00000570546 SCYL2Q6P3W7 929 aa16.66■□□□□ 0.26
CIITA-204ENST00000570546 GSPT2Q8IYD1 628 aaKnown RBP16.66■□□□□ 0.26
CIITA-204ENST00000570546 ATP2A3Q93084 1043 aa16.66■□□□□ 0.26
CIITA-204ENST00000570546 HDAC6Q9UBN7 1215 aa16.66■□□□□ 0.26
CIITA-204ENST00000570546 TNS3Q68CZ2 1445 aa16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms