RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 GPRASP2Q96D09 838 aa8.36□□□□□ -1.07
VPS39-204ENST00000561818 CCDC43Q96MW1 224 aaKnown RBP8.36□□□□□ -1.07
VPS39-204ENST00000561818 MXRA8Q9BRK3 442 aa8.36□□□□□ -1.07
VPS39-204ENST00000561818 ZNF577Q9BSK1 485 aa8.36□□□□□ -1.07
VPS39-204ENST00000561818 MMTAG2Q9BU76 263 aaKnown RBP8.36□□□□□ -1.07
VPS39-204ENST00000561818 TUBB2BQ9BVA1 445 aa8.36□□□□□ -1.07
VPS39-204ENST00000561818 RPAP3Q9H6T3 665 aaPredicted RBP8.36□□□□□ -1.07
VPS39-204ENST00000561818 ACAD9Q9H845 621 aa8.36□□□□□ -1.07
VPS39-204ENST00000561818 C17orf75Q9HAS0 396 aa8.36□□□□□ -1.07
VPS39-204ENST00000561818 METTL14Q9HCE5 456 aaKnown RBP8.36□□□□□ -1.07
VPS39-204ENST00000561818 LUC7LQ9NQ29 371 aaKnown RBP8.36□□□□□ -1.07
VPS39-204ENST00000561818 ADD3Q9UEY8 706 aaKnown RBP8.36□□□□□ -1.07
VPS39-204ENST00000561818 ZNF541Q9H0D2 1346 aa8.35□□□□□ -1.07
VPS39-204ENST00000561818 FRMD3A2A2Y4 597 aa8.35□□□□□ -1.07
VPS39-204ENST00000561818 POTEMA6NI47 508 aa8.35□□□□□ -1.07
VPS39-204ENST00000561818 WDR64B1ANS9 1081 aa8.35□□□□□ -1.07
VPS39-204ENST00000561818 IPO5O00410 1097 aaKnown RBP8.35□□□□□ -1.07
VPS39-204ENST00000561818 VWA5AO00534 786 aa8.35□□□□□ -1.07
VPS39-204ENST00000561818 CALUO43852 315 aaPredicted RBP8.35□□□□□ -1.07
VPS39-204ENST00000561818 KLRC4O43908 158 aa8.35□□□□□ -1.07
VPS39-204ENST00000561818 SLC25A27O95847 323 aa8.35□□□□□ -1.07
VPS39-204ENST00000561818 PRCPP42785 496 aa8.35□□□□□ -1.07
VPS39-204ENST00000561818 NFIL3Q16649 462 aa8.35□□□□□ -1.07
VPS39-204ENST00000561818 NCAPH2Q6IBW4 605 aa8.35□□□□□ -1.07
VPS39-204ENST00000561818 CCDC174Q6PII3 467 aa8.35□□□□□ -1.07
VPS39-204ENST00000561818 KCNV1Q6PIU1 500 aa8.35□□□□□ -1.07
VPS39-204ENST00000561818 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.35□□□□□ -1.07
VPS39-204ENST00000561818 FASTKD5Q7L8L6 764 aaKnown RBP8.35□□□□□ -1.07
VPS39-204ENST00000561818 RASGRP2Q7LDG7 609 aa8.35□□□□□ -1.07
VPS39-204ENST00000561818 ARMC9Q7Z3E5 817 aa8.35□□□□□ -1.07
VPS39-204ENST00000561818 TMTC1Q8IUR5 882 aa8.35□□□□□ -1.07
VPS39-204ENST00000561818 EXOC8Q8IYI6 725 aa8.35□□□□□ -1.07
VPS39-204ENST00000561818 EHBP1Q8NDI1 1231 aa8.35□□□□□ -1.07
VPS39-204ENST00000561818 DDX55Q8NHQ9 600 aaKnown RBP eCLIP8.35□□□□□ -1.07
VPS39-204ENST00000561818 NSUN6Q8TEA1 469 aaKnown RBP8.35□□□□□ -1.07
VPS39-204ENST00000561818 ERCC4Q92889 916 aaPredicted RBP8.35□□□□□ -1.07
VPS39-204ENST00000561818 ATP6V0A1Q93050 837 aa8.35□□□□□ -1.07
VPS39-204ENST00000561818 VTI1AQ96AJ9 217 aa8.35□□□□□ -1.07
VPS39-204ENST00000561818 NUP88Q99567 741 aaPredicted RBP8.35□□□□□ -1.07
VPS39-204ENST00000561818 ZSWIM4Q9H7M6 989 aa8.35□□□□□ -1.07
VPS39-204ENST00000561818 JADE2Q9NQC1 790 aa8.35□□□□□ -1.07
VPS39-204ENST00000561818 RTN4Q9NQC3 1192 aaKnown RBP8.35□□□□□ -1.07
VPS39-204ENST00000561818 PANK4Q9NVE7 773 aa8.35□□□□□ -1.07
VPS39-204ENST00000561818 PNMA3Q9UL41 463 aa8.35□□□□□ -1.07
VPS39-204ENST00000561818 ADAMTS5Q9UNA0 930 aa8.35□□□□□ -1.07
VPS39-204ENST00000561818 MYH7BA7E2Y1 1941 aa8.35□□□□□ -1.07
VPS39-204ENST00000561818 NFASCO94856 1347 aa8.34□□□□□ -1.07
VPS39-204ENST00000561818 IGLV3-22A0A075B6J6 115 aa8.34□□□□□ -1.07
VPS39-204ENST00000561818 A0A1W2PQJ5 194 aa8.34□□□□□ -1.07
VPS39-204ENST00000561818 FOXN1O15353 648 aa8.34□□□□□ -1.07
VPS39-204ENST00000561818 SLC16A3O15427 465 aaKnown RBP8.34□□□□□ -1.07
VPS39-204ENST00000561818 MSH4O15457 936 aa8.34□□□□□ -1.07
VPS39-204ENST00000561818 AP5Z1O43299 807 aa8.34□□□□□ -1.07
VPS39-204ENST00000561818 PSMD10O75832 226 aa8.34□□□□□ -1.07
VPS39-204ENST00000561818 P4HBP07237 508 aaKnown RBP8.34□□□□□ -1.07
VPS39-204ENST00000561818 IDEP14735 1019 aa8.34□□□□□ -1.07
VPS39-204ENST00000561818 GUCY2CP25092 1073 aa8.34□□□□□ -1.07
VPS39-204ENST00000561818 ANXA13P27216 316 aa8.34□□□□□ -1.07
VPS39-204ENST00000561818 EPS15P42566 896 aa8.34□□□□□ -1.07
VPS39-204ENST00000561818 COPB1P53618 953 aaKnown RBP8.34□□□□□ -1.07
VPS39-204ENST00000561818 MARSP56192 900 aaKnown RBP8.34□□□□□ -1.07
VPS39-204ENST00000561818 FMR1Q06787 632 aaKnown RBP eCLIP8.34□□□□□ -1.07
VPS39-204ENST00000561818 EHHADHQ08426 723 aa8.34□□□□□ -1.07
VPS39-204ENST00000561818 SPIRE1Q08AE8 756 aa8.34□□□□□ -1.07
VPS39-204ENST00000561818 SPP2Q13103 211 aa8.34□□□□□ -1.07
VPS39-204ENST00000561818 MTMR1Q13613 665 aa8.34□□□□□ -1.07
VPS39-204ENST00000561818 RRP1BQ14684 758 aaKnown RBP8.34□□□□□ -1.07
VPS39-204ENST00000561818 PTPN14Q15678 1187 aa8.34□□□□□ -1.07
VPS39-204ENST00000561818 MAN2A1Q16706 1144 aa8.34□□□□□ -1.07
VPS39-204ENST00000561818 BMT2Q1RMZ1 405 aa8.34□□□□□ -1.07
VPS39-204ENST00000561818 ZNF746Q6NUN9 644 aaPredicted RBP8.34□□□□□ -1.07
VPS39-204ENST00000561818 TTI2Q6NXR4 508 aa8.34□□□□□ -1.07
VPS39-204ENST00000561818 RNF207Q6ZRF8 634 aa8.34□□□□□ -1.07
VPS39-204ENST00000561818 OTUD6AQ7L8S5 288 aa8.34□□□□□ -1.07
VPS39-204ENST00000561818 SAMD7Q7Z3H4 446 aa8.34□□□□□ -1.07
VPS39-204ENST00000561818 USP37Q86T82 979 aa8.34□□□□□ -1.07
VPS39-204ENST00000561818 GPBP1Q86WP2 473 aa8.34□□□□□ -1.07
VPS39-204ENST00000561818 ERO1BQ86YB8 467 aa8.34□□□□□ -1.07
VPS39-204ENST00000561818 DHX37Q8IY37 1157 aaKnown RBP8.34□□□□□ -1.07
VPS39-204ENST00000561818 GRAMD1CQ8IYS0 662 aa8.34□□□□□ -1.07
VPS39-204ENST00000561818 KIF18AQ8NI77 898 aa8.34□□□□□ -1.07
VPS39-204ENST00000561818 TMEM174Q8WUU8 243 aa8.34□□□□□ -1.07
VPS39-204ENST00000561818 LENG9Q96B70 501 aa8.34□□□□□ -1.07
VPS39-204ENST00000561818 HVCN1Q96D96 273 aa8.34□□□□□ -1.07
VPS39-204ENST00000561818 DRC1Q96MC2 740 aa8.34□□□□□ -1.07
VPS39-204ENST00000561818 PNMA5Q96PV4 448 aa8.34□□□□□ -1.07
VPS39-204ENST00000561818 MTRQ99707 1265 aa8.34□□□□□ -1.07
VPS39-204ENST00000561818 BAG1Q99933 345 aaPredicted RBP8.34□□□□□ -1.07
VPS39-204ENST00000561818 SENP7Q9BQF6 1050 aa8.34□□□□□ -1.07
VPS39-204ENST00000561818 EIF2AK1Q9BQI3 630 aaKnown RBP8.34□□□□□ -1.07
VPS39-204ENST00000561818 SRRTQ9BXP5 876 aaKnown RBP8.34□□□□□ -1.07
VPS39-204ENST00000561818 HSD3B7Q9H2F3 369 aa8.34□□□□□ -1.07
VPS39-204ENST00000561818 BLZF1Q9H2G9 400 aa8.34□□□□□ -1.07
VPS39-204ENST00000561818 RRAGDQ9NQL2 400 aaPredicted RBP8.34□□□□□ -1.07
VPS39-204ENST00000561818 BLOC1S4Q9NUP1 217 aa8.34□□□□□ -1.07
VPS39-204ENST00000561818 RNF181Q9P0P0 153 aa8.34□□□□□ -1.07
VPS39-204ENST00000561818 LARSQ9P2J5 1176 aaKnown RBP8.34□□□□□ -1.07
VPS39-204ENST00000561818 MYO1AQ9UBC5 1043 aa8.34□□□□□ -1.07
VPS39-204ENST00000561818 DBR1Q9UK59 544 aaKnown RBP8.34□□□□□ -1.07
VPS39-204ENST00000561818 VAV3Q9UKW4 847 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 101.7 ms