RNA–Protein interactions for RNA: ENST00000558218.5

USP3-207, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 717 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-207ENST00000558218 ARIH1Q9Y4X5 557 aaPredicted RBP11.66□□□□□ -0.54
USP3-207ENST00000558218 FRMPD4Q14CM0 1322 aa11.65□□□□□ -0.54
USP3-207ENST00000558218 RGS20O76081 388 aa11.65□□□□□ -0.54
USP3-207ENST00000558218 REC8O95072 547 aa11.65□□□□□ -0.54
USP3-207ENST00000558218 FGBP02675 491 aa11.65□□□□□ -0.54
USP3-207ENST00000558218 MYCLP12524 364 aaPredicted RBP11.65□□□□□ -0.54
USP3-207ENST00000558218 RFC2P35250 354 aa11.65□□□□□ -0.54
USP3-207ENST00000558218 MLLT3P42568 568 aaPredicted RBP11.65□□□□□ -0.54
USP3-207ENST00000558218 BFSP2Q13515 415 aa11.65□□□□□ -0.54
USP3-207ENST00000558218 CELF3Q5SZQ8 465 aaKnown RBP11.65□□□□□ -0.54
USP3-207ENST00000558218 C6orf132Q5T0Z8 1188 aa11.65□□□□□ -0.54
USP3-207ENST00000558218 FCHSD1Q86WN1 690 aa11.65□□□□□ -0.54
USP3-207ENST00000558218 FBXL16Q8N461 479 aa11.65□□□□□ -0.54
USP3-207ENST00000558218 SMARCC2Q8TAQ2 1214 aa11.65□□□□□ -0.54
USP3-207ENST00000558218 HERVK_113Q902F9 699 aa11.65□□□□□ -0.54
USP3-207ENST00000558218 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.65□□□□□ -0.543e-7■□□□□ 11.3
USP3-207ENST00000558218 PPP1R12CQ9BZL4 782 aa11.65□□□□□ -0.54
USP3-207ENST00000558218 SPATA31C2B4DYI2 1134 aa11.64□□□□□ -0.55
USP3-207ENST00000558218 MEIS2O14770 477 aa11.64□□□□□ -0.55
USP3-207ENST00000558218 MAFGO15525 162 aa11.64□□□□□ -0.55
USP3-207ENST00000558218 HRO43593 1189 aa11.64□□□□□ -0.55
USP3-207ENST00000558218 PARNO95453 639 aaKnown RBP11.64□□□□□ -0.55
USP3-207ENST00000558218 NEFLP07196 543 aa11.64□□□□□ -0.55
USP3-207ENST00000558218 CYP2C18P33260 490 aa11.64□□□□□ -0.55
USP3-207ENST00000558218 HSPA4P34932 840 aa11.64□□□□□ -0.55
USP3-207ENST00000558218 NEDD9Q14511 834 aa11.64□□□□□ -0.55
USP3-207ENST00000558218 PCNX4Q63HM2 1172 aa11.64□□□□□ -0.55
USP3-207ENST00000558218 APOA5Q6Q788 366 aa11.64□□□□□ -0.55
USP3-207ENST00000558218 TMTC3Q6ZXV5 915 aa11.64□□□□□ -0.55
USP3-207ENST00000558218 ZNF365Q70YC5 407 aa11.64□□□□□ -0.55
USP3-207ENST00000558218 RETREG2Q8NC44 543 aa11.64□□□□□ -0.55
USP3-207ENST00000558218 GIMAP8Q8ND71 665 aaPredicted RBP11.64□□□□□ -0.55
USP3-207ENST00000558218 INPP4AQ96PE3 977 aaPredicted RBP11.64□□□□□ -0.55
USP3-207ENST00000558218 SENP7Q9BQF6 1050 aa11.64□□□□□ -0.55
USP3-207ENST00000558218 MYL10Q9BUA6 226 aa11.64□□□□□ -0.55
USP3-207ENST00000558218 SEMA6BQ9H3T3 888 aa11.64□□□□□ -0.55
USP3-207ENST00000558218 PSTPIP2Q9H939 334 aa11.64□□□□□ -0.55
USP3-207ENST00000558218 TRMT13Q9NUP7 481 aaKnown RBP11.64□□□□□ -0.55
USP3-207ENST00000558218 MYH7BA7E2Y1 1941 aa11.64□□□□□ -0.55
USP3-207ENST00000558218 CCDC196A0A1B0GTZ2 297 aa11.63□□□□□ -0.55
USP3-207ENST00000558218 hCG_1984214I3L0E3 225 aa11.63□□□□□ -0.55
USP3-207ENST00000558218 TK2O00142 265 aa11.63□□□□□ -0.55
USP3-207ENST00000558218 HAS3O00219 553 aa11.63□□□□□ -0.55
USP3-207ENST00000558218 ZBTB43O43298 467 aa11.63□□□□□ -0.55
USP3-207ENST00000558218 FIBPO43427 364 aa11.63□□□□□ -0.55
USP3-207ENST00000558218 PLEKHA8P1O95397 391 aa11.63□□□□□ -0.55
USP3-207ENST00000558218 MRPS9P82933 396 aaKnown RBP11.63□□□□□ -0.55
USP3-207ENST00000558218 FAM47CQ5HY64 1035 aa11.63□□□□□ -0.55
USP3-207ENST00000558218 Q7L0L9 218 aa11.63□□□□□ -0.55
USP3-207ENST00000558218 NLRX1Q86UT6 975 aa11.63□□□□□ -0.55
USP3-207ENST00000558218 CCDC155Q8N6L0 562 aa11.63□□□□□ -0.55
USP3-207ENST00000558218 ZNF713Q8N859 430 aaPredicted RBP11.63□□□□□ -0.55
USP3-207ENST00000558218 CAGE1Q8TC20 777 aa11.63□□□□□ -0.55
USP3-207ENST00000558218 KAT2BQ92831 832 aa11.63□□□□□ -0.55
USP3-207ENST00000558218 CDHR1Q96JP9 859 aa11.63□□□□□ -0.55
USP3-207ENST00000558218 SPATA33Q96N06 139 aa11.63□□□□□ -0.55
USP3-207ENST00000558218 GLT8D2Q9H1C3 349 aa11.63□□□□□ -0.55
USP3-207ENST00000558218 MLXIPQ9HAP2 919 aa11.63□□□□□ -0.55
USP3-207ENST00000558218 PPP1R3GB7ZBB8 358 aa11.62□□□□□ -0.55
USP3-207ENST00000558218 GGPS1O95749 300 aa11.62□□□□□ -0.55
USP3-207ENST00000558218 F2P00734 622 aa11.62□□□□□ -0.55
USP3-207ENST00000558218 PSMA5P28066 241 aa11.62□□□□□ -0.55
USP3-207ENST00000558218 RBL2Q08999 1139 aa11.62□□□□□ -0.55
USP3-207ENST00000558218 PTGISQ16647 500 aa11.62□□□□□ -0.55
USP3-207ENST00000558218 ADCK5Q3MIX3 580 aa11.62□□□□□ -0.55
USP3-207ENST00000558218 USP17L6PQ6QN14 398 aa11.62□□□□□ -0.55
USP3-207ENST00000558218 METTL7BQ6UX53 244 aa11.62□□□□□ -0.55
USP3-207ENST00000558218 SKAP1Q86WV1 359 aa11.62□□□□□ -0.55
USP3-207ENST00000558218 C7orf31Q8N865 590 aa11.62□□□□□ -0.55
USP3-207ENST00000558218 USP26Q9BXU7 913 aa11.62□□□□□ -0.55
USP3-207ENST00000558218 WNT8AQ9H1J5 351 aa11.62□□□□□ -0.55
USP3-207ENST00000558218 CDHR5Q9HBB8 845 aa11.62□□□□□ -0.55
USP3-207ENST00000558218 GTF2IRD1Q9UHL9 959 aa11.62□□□□□ -0.55
USP3-207ENST00000558218 NOD1Q9Y239 953 aa11.62□□□□□ -0.55
USP3-207ENST00000558218 FOSP01100 380 aaPredicted RBP11.61□□□□□ -0.55
USP3-207ENST00000558218 IQCF3P0C7M6 154 aa11.61□□□□□ -0.55
USP3-207ENST00000558218 ACRP10323 421 aa11.61□□□□□ -0.55
USP3-207ENST00000558218 CYP2C9P11712 490 aa11.61□□□□□ -0.55
USP3-207ENST00000558218 ACTN1P12814 892 aa11.61□□□□□ -0.55
USP3-207ENST00000558218 RXRAP19793 462 aa11.61□□□□□ -0.55
USP3-207ENST00000558218 UBA1P22314 1058 aaKnown RBP11.61□□□□□ -0.55
USP3-207ENST00000558218 CCL23P55773 120 aa11.61□□□□□ -0.55
USP3-207ENST00000558218 SP2Q02086 613 aa11.61□□□□□ -0.55
USP3-207ENST00000558218 COL9A3Q14050 684 aaPredicted RBP11.61□□□□□ -0.55
USP3-207ENST00000558218 RAB30Q15771 203 aa11.61□□□□□ -0.55
USP3-207ENST00000558218 RTN1Q16799 776 aa11.61□□□□□ -0.55
USP3-207ENST00000558218 HSDL1Q3SXM5 330 aa11.61□□□□□ -0.55
USP3-207ENST00000558218 PPP1R18Q6NYC8 613 aa11.61□□□□□ -0.55
USP3-207ENST00000558218 MICU3Q86XE3 530 aa11.61□□□□□ -0.55
USP3-207ENST00000558218 CMTR1Q8N1G2 835 aaKnown RBP11.61□□□□□ -0.55
USP3-207ENST00000558218 IL31RAQ8NI17 732 aa11.61□□□□□ -0.55
USP3-207ENST00000558218 PHOSPHO2Q8TCD6 241 aa11.61□□□□□ -0.55
USP3-207ENST00000558218 AFAP1L1Q8TED9 768 aa11.61□□□□□ -0.55
USP3-207ENST00000558218 PIBF1Q8WXW3 757 aa11.61□□□□□ -0.55
USP3-207ENST00000558218 GPRASP2Q96D09 838 aa11.61□□□□□ -0.55
USP3-207ENST00000558218 C16orf70Q9BSU1 422 aa11.61□□□□□ -0.55
USP3-207ENST00000558218 LRRC2Q9BYS8 371 aa11.61□□□□□ -0.55
USP3-207ENST00000558218 EHMT1Q9H9B1 1298 aa11.61□□□□□ -0.55
USP3-207ENST00000558218 BRPF3Q9ULD4 1205 aa11.61□□□□□ -0.55
USP3-207ENST00000558218 UMODL1Q5DID0 1318 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms