RNA–Protein interactions for RNA: ENST00000557024.1

SYNE2-224, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 998 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-224ENST00000557024 RANBP6O60518 1105 aaKnown RBP10.93□□□□□ -0.66
SYNE2-224ENST00000557024 GFRA3O60609 400 aa10.93□□□□□ -0.66
SYNE2-224ENST00000557024 CSPG5O95196 566 aa10.93□□□□□ -0.66
SYNE2-224ENST00000557024 THPOP40225 353 aa10.93□□□□□ -0.66
SYNE2-224ENST00000557024 MRPL12P52815 198 aaKnown RBP10.93□□□□□ -0.66
SYNE2-224ENST00000557024 HYAL1Q12794 435 aa10.93□□□□□ -0.66
SYNE2-224ENST00000557024 TCF15Q12870 199 aa10.93□□□□□ -0.66
SYNE2-224ENST00000557024 HIC1Q14526 733 aa10.93□□□□□ -0.66
SYNE2-224ENST00000557024 KIAA0753Q2KHM9 967 aa10.93□□□□□ -0.66
SYNE2-224ENST00000557024 CTC1Q2NKJ3 1217 aa10.93□□□□□ -0.66
SYNE2-224ENST00000557024 TRIM67Q6ZTA4 783 aa10.93□□□□□ -0.66
SYNE2-224ENST00000557024 ZBTB40Q9NUA8 1239 aa10.93□□□□□ -0.66
SYNE2-224ENST00000557024 ZFHX2Q9C0A1 2572 aaPredicted RBP10.93□□□□□ -0.66
SYNE2-224ENST00000557024 C5orf42Q9H799 3197 aa10.92□□□□□ -0.66
SYNE2-224ENST00000557024 RSPH10B2B2RC85 870 aa10.92□□□□□ -0.66
SYNE2-224ENST00000557024 STXBP3O00186 592 aa10.92□□□□□ -0.66
SYNE2-224ENST00000557024 NCK2O43639 380 aa10.92□□□□□ -0.66
SYNE2-224ENST00000557024 TBX10O75333 385 aa10.92□□□□□ -0.66
SYNE2-224ENST00000557024 F2P00734 622 aa10.92□□□□□ -0.66
SYNE2-224ENST00000557024 RSPH10BP0C881 870 aa10.92□□□□□ -0.66
SYNE2-224ENST00000557024 CTNNB1P35222 781 aa10.92□□□□□ -0.66
SYNE2-224ENST00000557024 SMAD4Q13485 552 aaKnown RBP10.92□□□□□ -0.66
SYNE2-224ENST00000557024 USH1GQ495M9 461 aa10.92□□□□□ -0.66
SYNE2-224ENST00000557024 PLEKHG4Q58EX7 1191 aa10.92□□□□□ -0.66
SYNE2-224ENST00000557024 BMP8AQ7Z5Y6 402 aa10.92□□□□□ -0.66
SYNE2-224ENST00000557024 SUGP1Q8IWZ8 645 aaKnown RBP10.92□□□□□ -0.66
SYNE2-224ENST00000557024 DHX37Q8IY37 1157 aaKnown RBP10.92□□□□□ -0.66
SYNE2-224ENST00000557024 KATNAL1Q9BW62 490 aa10.92□□□□□ -0.66
SYNE2-224ENST00000557024 IGFLR1Q9H665 355 aa10.92□□□□□ -0.66
SYNE2-224ENST00000557024 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.92□□□□□ -0.66
SYNE2-224ENST00000557024 HAS3O00219 553 aa10.91□□□□□ -0.66
SYNE2-224ENST00000557024 LINC01565O15544 149 aa10.91□□□□□ -0.66
SYNE2-224ENST00000557024 GTF2F1P35269 517 aaKnown RBP eCLIP10.91□□□□□ -0.66
SYNE2-224ENST00000557024 NOVP48745 357 aa10.91□□□□□ -0.66
SYNE2-224ENST00000557024 LCE2DQ5TA82 110 aaPredicted RBP10.91□□□□□ -0.66
SYNE2-224ENST00000557024 SERINC5Q86VE9 423 aa10.91□□□□□ -0.66
SYNE2-224ENST00000557024 TOP1MTQ969P6 601 aa10.91□□□□□ -0.66
SYNE2-224ENST00000557024 CCDC136Q96JN2 1154 aa10.91□□□□□ -0.66
SYNE2-224ENST00000557024 TAAR1Q96RJ0 339 aa10.91□□□□□ -0.66
SYNE2-224ENST00000557024 PRRX2Q99811 253 aa10.91□□□□□ -0.66
SYNE2-224ENST00000557024 TMEM47Q9BQJ4 181 aa10.91□□□□□ -0.66
SYNE2-224ENST00000557024 IFIH1Q9BYX4 1025 aaKnown RBP10.91□□□□□ -0.66
SYNE2-224ENST00000557024 OSBPL7Q9BZF2 842 aa10.91□□□□□ -0.66
SYNE2-224ENST00000557024 PPP4R2Q9NY27 417 aa10.91□□□□□ -0.66
SYNE2-224ENST00000557024 CD207Q9UJ71 328 aa10.91□□□□□ -0.66
SYNE2-224ENST00000557024 PNMA2Q9UL42 364 aa10.91□□□□□ -0.66
SYNE2-224ENST00000557024 WDR19Q8NEZ3 1342 aa10.9□□□□□ -0.66
SYNE2-224ENST00000557024 MYH7P12883 1935 aa10.9□□□□□ -0.66
SYNE2-224ENST00000557024 LOC101059915A0A1B0GWI6 518 aaPredicted RBP10.9□□□□□ -0.66
SYNE2-224ENST00000557024 GRM6O15303 877 aa10.9□□□□□ -0.66
SYNE2-224ENST00000557024 FOXP2O15409 715 aa10.9□□□□□ -0.66
SYNE2-224ENST00000557024 SORBS3O60504 671 aa10.9□□□□□ -0.66
SYNE2-224ENST00000557024 TOP1P11387 765 aaKnown RBP10.9□□□□□ -0.66
SYNE2-224ENST00000557024 FOXK2Q01167 660 aa10.9□□□□□ -0.66
SYNE2-224ENST00000557024 PKN1Q16512 942 aa10.9□□□□□ -0.66
SYNE2-224ENST00000557024 FBXL6Q8N531 539 aa10.9□□□□□ -0.66
SYNE2-224ENST00000557024 PPTC7Q8NI37 304 aa10.9□□□□□ -0.66
SYNE2-224ENST00000557024 SYTL5Q8TDW5 730 aaPredicted RBP10.9□□□□□ -0.66
SYNE2-224ENST00000557024 NSUN6Q8TEA1 469 aaKnown RBP10.9□□□□□ -0.66
SYNE2-224ENST00000557024 SEPT8Q92599 483 aa10.9□□□□□ -0.66
SYNE2-224ENST00000557024 TBC1D5Q92609 795 aa10.9□□□□□ -0.66
SYNE2-224ENST00000557024 GPATCH3Q96I76 525 aa10.9□□□□□ -0.66
SYNE2-224ENST00000557024 RWDD1Q9H446 243 aaPredicted RBP10.9□□□□□ -0.66
SYNE2-224ENST00000557024 COL20A1Q9P218 1284 aa10.9□□□□□ -0.66
SYNE2-224ENST00000557024 DDX41Q9UJV9 622 aaKnown RBP10.9□□□□□ -0.66
SYNE2-224ENST00000557024 CACNA1AO00555 2505 aa10.89□□□□□ -0.67
SYNE2-224ENST00000557024 TECTAO75443 2155 aa10.89□□□□□ -0.67
SYNE2-224ENST00000557024 CTSHP09668 335 aa10.89□□□□□ -0.67
SYNE2-224ENST00000557024 PDHBP11177 359 aa10.89□□□□□ -0.67
SYNE2-224ENST00000557024 VCPP55072 806 aaKnown RBP10.89□□□□□ -0.67
SYNE2-224ENST00000557024 ZXDAP98168 799 aa10.89□□□□□ -0.67
SYNE2-224ENST00000557024 ZNF543Q08ER8 600 aa10.89□□□□□ -0.67
SYNE2-224ENST00000557024 LAMC2Q13753 1193 aa10.89□□□□□ -0.67
SYNE2-224ENST00000557024 STXBP2Q15833 593 aa10.89□□□□□ -0.67
SYNE2-224ENST00000557024 FIBCD1Q8N539 461 aa10.89□□□□□ -0.67
SYNE2-224ENST00000557024 RGS22Q8NE09 1264 aa10.89□□□□□ -0.67
SYNE2-224ENST00000557024 EMID1Q96A84 441 aaPredicted RBP10.89□□□□□ -0.67
SYNE2-224ENST00000557024 IL17RAQ96F46 866 aa10.89□□□□□ -0.67
SYNE2-224ENST00000557024 RMDN3Q96TC7 470 aa10.89□□□□□ -0.67
SYNE2-224ENST00000557024 C11orf84Q9BUA3 381 aaPredicted RBP10.89□□□□□ -0.67
SYNE2-224ENST00000557024 CPVLQ9H3G5 476 aa10.89□□□□□ -0.67
SYNE2-224ENST00000557024 ALG13Q9NP73 1137 aaKnown RBP10.89□□□□□ -0.67
SYNE2-224ENST00000557024 TOMM22Q9NS69 142 aa10.89□□□□□ -0.67
SYNE2-224ENST00000557024 MRVI1Q9Y6F6 885 aa10.89□□□□□ -0.67
SYNE2-224ENST00000557024 TRIP12Q14669 1992 aaPredicted RBP10.88□□□□□ -0.67
SYNE2-224ENST00000557024 ZDBF2Q9HCK1 2354 aa10.88□□□□□ -0.67
SYNE2-224ENST00000557024 C5orf67F2Z3F1 127 aa10.88□□□□□ -0.67
SYNE2-224ENST00000557024 ORC4O43929 436 aa10.88□□□□□ -0.67
SYNE2-224ENST00000557024 LINC00271P0C7V0 271 aa10.88□□□□□ -0.67
SYNE2-224ENST00000557024 EIF2AK2P19525 551 aaKnown RBP10.88□□□□□ -0.67
SYNE2-224ENST00000557024 BMPR1AP36894 532 aa10.88□□□□□ -0.67
SYNE2-224ENST00000557024 NDUFV1P49821 464 aa10.88□□□□□ -0.67
SYNE2-224ENST00000557024 RRP12Q5JTH9 1297 aaKnown RBP10.88□□□□□ -0.67
SYNE2-224ENST00000557024 ZMYM1Q5SVZ6 1142 aa10.88□□□□□ -0.67
SYNE2-224ENST00000557024 OXER1Q8TDS5 423 aa10.88□□□□□ -0.67
SYNE2-224ENST00000557024 ATOH1Q92858 354 aaPredicted RBP10.88□□□□□ -0.67
SYNE2-224ENST00000557024 ATP6V0A1Q93050 837 aa10.88□□□□□ -0.67
SYNE2-224ENST00000557024 IWS1Q96ST2 819 aa10.88□□□□□ -0.67
SYNE2-224ENST00000557024 LMAN2LQ9H0V9 348 aa10.88□□□□□ -0.67
SYNE2-224ENST00000557024 COL4A6Q14031 1691 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms