RNA–Protein interactions for RNA: ENST00000556725.1

SYNE2-222, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 3

Gene SYNE2, Length 672 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-222	ENST00000556725	AMH	P03971	560 aa		10.14	□□□□□ -0.79
SYNE2-222	ENST00000556725	MRPL12	P52815	198 aa	Known RBP	10.14	□□□□□ -0.79
SYNE2-222	ENST00000556725	DLX2	Q07687	328 aa	Predicted RBP	10.14	□□□□□ -0.79
SYNE2-222	ENST00000556725	COL19A1	Q14993	1142 aa		10.14	□□□□□ -0.79
SYNE2-222	ENST00000556725	STXBP2	Q15833	593 aa		10.14	□□□□□ -0.79
SYNE2-222	ENST00000556725	CLUL1	Q15846	466 aa		10.14	□□□□□ -0.79
SYNE2-222	ENST00000556725	PTPRO	Q16827	1216 aa		10.14	□□□□□ -0.79
SYNE2-222	ENST00000556725	TMEM192	Q8IY95	271 aa		10.14	□□□□□ -0.79
SYNE2-222	ENST00000556725	RGS22	Q8NE09	1264 aa		10.14	□□□□□ -0.79
SYNE2-222	ENST00000556725	SYTL5	Q8TDW5	730 aa	Predicted RBP	10.14	□□□□□ -0.79
SYNE2-222	ENST00000556725	KCNH6	Q9H252	994 aa		10.14	□□□□□ -0.79
SYNE2-222	ENST00000556725	TCP11L1	Q9NUJ3	509 aa		10.14	□□□□□ -0.79
SYNE2-222	ENST00000556725	CLDND1	Q9NY35	253 aa		10.14	□□□□□ -0.79
SYNE2-222	ENST00000556725	ATG2A	Q2TAZ0	1938 aa		10.13	□□□□□ -0.79
SYNE2-222	ENST00000556725	CFAP54	Q96N23	3096 aa		10.13	□□□□□ -0.79
SYNE2-222	ENST00000556725	ZNF318	Q5VUA4	2279 aa		10.13	□□□□□ -0.79
SYNE2-222	ENST00000556725	WDR19	Q8NEZ3	1342 aa		10.13	□□□□□ -0.79
SYNE2-222	ENST00000556725	NLRC5	Q86WI3	1866 aa		10.13	□□□□□ -0.79
SYNE2-222	ENST00000556725	LOC101059915	A0A1B0GWI6	518 aa	Predicted RBP	10.13	□□□□□ -0.79
SYNE2-222	ENST00000556725	RSPH10B2	B2RC85	870 aa		10.13	□□□□□ -0.79
SYNE2-222	ENST00000556725	F2	P00734	622 aa		10.13	□□□□□ -0.79
SYNE2-222	ENST00000556725	FGA	P02671	866 aa		10.13	□□□□□ -0.79
SYNE2-222	ENST00000556725	RSPH10B	P0C881	870 aa		10.13	□□□□□ -0.79
SYNE2-222	ENST00000556725	SNHG28	P0DPA3	235 aa		10.13	□□□□□ -0.79
SYNE2-222	ENST00000556725	THPO	P40225	353 aa		10.13	□□□□□ -0.79
SYNE2-222	ENST00000556725	ALX1	Q15699	326 aa		10.13	□□□□□ -0.79
SYNE2-222	ENST00000556725	PLEKHG4	Q58EX7	1191 aa		10.13	□□□□□ -0.79
SYNE2-222	ENST00000556725	RPAIN	Q86UA6	219 aa		10.13	□□□□□ -0.79
SYNE2-222	ENST00000556725	ADHFE1	Q8IWW8	467 aa		10.13	□□□□□ -0.79
SYNE2-222	ENST00000556725	NSUN6	Q8TEA1	469 aa	Known RBP	10.13	□□□□□ -0.79
SYNE2-222	ENST00000556725	TOP1MT	Q969P6	601 aa		10.13	□□□□□ -0.79
SYNE2-222	ENST00000556725	IRX2	Q9BZI1	471 aa	Predicted RBP	10.13	□□□□□ -0.79
SYNE2-222	ENST00000556725	CHMP4B	Q9H444	224 aa	Known RBP	10.13	□□□□□ -0.79
SYNE2-222	ENST00000556725	PRKAG3	Q9UGI9	489 aa		10.13	□□□□□ -0.79
SYNE2-222	ENST00000556725	MUTYH	Q9UIF7	546 aa		10.13	□□□□□ -0.79
SYNE2-222	ENST00000556725	EIF2AK2	P19525	551 aa	Known RBP	10.12	□□□□□ -0.79
SYNE2-222	ENST00000556725	GTF2F1	P35269	517 aa	Known RBP eCLIP	10.12	□□□□□ -0.79
SYNE2-222	ENST00000556725	HAND2	P61296	217 aa		10.12	□□□□□ -0.79
SYNE2-222	ENST00000556725	HYAL1	Q12794	435 aa		10.12	□□□□□ -0.79
SYNE2-222	ENST00000556725	LAMC2	Q13753	1193 aa		10.12	□□□□□ -0.79
SYNE2-222	ENST00000556725	HSDL1	Q3SXM5	330 aa		10.12	□□□□□ -0.79
SYNE2-222	ENST00000556725	TIGD5	Q53EQ6	642 aa		10.12	□□□□□ -0.79
SYNE2-222	ENST00000556725	DHX37	Q8IY37	1157 aa	Known RBP	10.12	□□□□□ -0.79
SYNE2-222	ENST00000556725	PRSS33	Q8NF86	280 aa		10.12	□□□□□ -0.79
SYNE2-222	ENST00000556725	PPTC7	Q8NI37	304 aa		10.12	□□□□□ -0.79
SYNE2-222	ENST00000556725	EMID1	Q96A84	441 aa	Predicted RBP	10.12	□□□□□ -0.79
SYNE2-222	ENST00000556725	SAMD11	Q96NU1	681 aa		10.12	□□□□□ -0.79
SYNE2-222	ENST00000556725	IWS1	Q96ST2	819 aa		10.12	□□□□□ -0.79
SYNE2-222	ENST00000556725	YME1L1	Q96TA2	773 aa		10.12	□□□□□ -0.79
SYNE2-222	ENST00000556725	RMDN3	Q96TC7	470 aa		10.12	□□□□□ -0.79
SYNE2-222	ENST00000556725	ZKSCAN3	Q9BRR0	538 aa		10.12	□□□□□ -0.79
SYNE2-222	ENST00000556725	KATNAL1	Q9BW62	490 aa		10.12	□□□□□ -0.79
SYNE2-222	ENST00000556725	NSUN3	Q9H649	340 aa	Known RBP	10.12	□□□□□ -0.79
SYNE2-222	ENST00000556725	PNMA2	Q9UL42	364 aa		10.12	□□□□□ -0.79
SYNE2-222	ENST00000556725	MRVI1	Q9Y6F6	885 aa		10.12	□□□□□ -0.79
SYNE2-222	ENST00000556725	TTC41P	Q6P2S7	1318 aa		10.11	□□□□□ -0.79
SYNE2-222	ENST00000556725	TREH	O43280	583 aa		10.11	□□□□□ -0.79
SYNE2-222	ENST00000556725	MBTPS2	O43462	519 aa		10.11	□□□□□ -0.79
SYNE2-222	ENST00000556725	EIF3J	O75822	258 aa	Known RBP	10.11	□□□□□ -0.79
SYNE2-222	ENST00000556725	NR3C2	P08235	984 aa		10.11	□□□□□ -0.79
SYNE2-222	ENST00000556725	SP2	Q02086	613 aa		10.11	□□□□□ -0.79
SYNE2-222	ENST00000556725	SMAD2	Q15796	467 aa	Known RBP	10.11	□□□□□ -0.79
SYNE2-222	ENST00000556725	CDC37	Q16543	378 aa	Predicted RBP	10.11	□□□□□ -0.79
SYNE2-222	ENST00000556725	CTC1	Q2NKJ3	1217 aa		10.11	□□□□□ -0.79
SYNE2-222	ENST00000556725	ARHGEF16	Q5VV41	709 aa		10.11	□□□□□ -0.79
SYNE2-222	ENST00000556725	MYSM1	Q5VVJ2	828 aa		10.11	□□□□□ -0.79
SYNE2-222	ENST00000556725	SERINC5	Q86VE9	423 aa		10.11	□□□□□ -0.79
SYNE2-222	ENST00000556725	FBXO11	Q86XK2	927 aa		10.11	□□□□□ -0.79
SYNE2-222	ENST00000556725	RNF135	Q8IUD6	432 aa		10.11	□□□□□ -0.79
SYNE2-222	ENST00000556725	ADGRF4	Q8IZF3	695 aa		10.11	□□□□□ -0.79
SYNE2-222	ENST00000556725	ATP6V0A1	Q93050	837 aa		10.11	□□□□□ -0.79
SYNE2-222	ENST00000556725	MFSD14A	Q96MC6	490 aa		10.11	□□□□□ -0.79
SYNE2-222	ENST00000556725	TTC14	Q96N46	770 aa		10.11	□□□□□ -0.79
SYNE2-222	ENST00000556725	C16orf70	Q9BSU1	422 aa		10.11	□□□□□ -0.79
SYNE2-222	ENST00000556725	UPF3B	Q9BZI7	483 aa	Known RBP	10.11	□□□□□ -0.79
SYNE2-222	ENST00000556725	BCAS3	Q9H6U6	928 aa		10.11	□□□□□ -0.79
SYNE2-222	ENST00000556725	FAM50B	Q9Y247	325 aa		10.11	□□□□□ -0.79
SYNE2-222	ENST00000556725	TECTA	O75443	2155 aa		10.11	□□□□□ -0.79
SYNE2-222	ENST00000556725	ABCB11	O95342	1321 aa		10.1	□□□□□ -0.79
SYNE2-222	ENST00000556725	EMSY	Q7Z589	1322 aa		10.1	□□□□□ -0.79
SYNE2-222	ENST00000556725	GRM6	O15303	877 aa		10.1	□□□□□ -0.79
SYNE2-222	ENST00000556725	LINC01565	O15544	149 aa		10.1	□□□□□ -0.79
SYNE2-222	ENST00000556725	PPFIA4	O75335	1185 aa		10.1	□□□□□ -0.79
SYNE2-222	ENST00000556725	CSPG5	O95196	566 aa		10.1	□□□□□ -0.79
SYNE2-222	ENST00000556725	CTSH	P09668	335 aa		10.1	□□□□□ -0.79
SYNE2-222	ENST00000556725	LINC00271	P0C7V0	271 aa		10.1	□□□□□ -0.79
SYNE2-222	ENST00000556725	MYCL	P12524	364 aa	Predicted RBP	10.1	□□□□□ -0.79
SYNE2-222	ENST00000556725	HOXD8	P13378	290 aa	Predicted RBP	10.1	□□□□□ -0.79
SYNE2-222	ENST00000556725	HERC4	Q5GLZ8	1057 aa	Predicted RBP	10.1	□□□□□ -0.79
SYNE2-222	ENST00000556725	CELF3	Q5SZQ8	465 aa	Known RBP	10.1	□□□□□ -0.79
SYNE2-222	ENST00000556725	SEPT8	Q92599	483 aa		10.1	□□□□□ -0.79
SYNE2-222	ENST00000556725	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	10.1	□□□□□ -0.79
SYNE2-222	ENST00000556725	FAM227B	Q96M60	508 aa		10.1	□□□□□ -0.79
SYNE2-222	ENST00000556725	SPATA33	Q96N06	139 aa		10.1	□□□□□ -0.79
SYNE2-222	ENST00000556725	RNPEP	Q9H4A4	650 aa		10.1	□□□□□ -0.79
SYNE2-222	ENST00000556725	IGFLR1	Q9H665	355 aa		10.1	□□□□□ -0.79
SYNE2-222	ENST00000556725	VAT1L	Q9HCJ6	419 aa		10.1	□□□□□ -0.79
SYNE2-222	ENST00000556725	PXMP2	Q9NR77	195 aa		10.1	□□□□□ -0.79
SYNE2-222	ENST00000556725	MYH6	P13533	1939 aa		10.09	□□□□□ -0.79
SYNE2-222	ENST00000556725	RALGAPA2	Q2PPJ7	1873 aa		10.09	□□□□□ -0.79

Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms