RNA–Protein interactions for RNA: ENST00000556083.1

ACTN1-216, Transcript of actinin alpha 1, humanhuman

TSL 1 (best)

Gene ACTN1, Length 4,674 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-216ENST00000556083 DBNLQ9UJU6 430 aaKnown RBP11.61□□□□□ -0.55
ACTN1-216ENST00000556083 SHROOM2Q13796 1616 aa11.61□□□□□ -0.55
ACTN1-216ENST00000556083 ABCA8O94911 1581 aa11.61□□□□□ -0.55
ACTN1-216ENST00000556083 DLATP10515 647 aaKnown RBP11.6□□□□□ -0.55
ACTN1-216ENST00000556083 ABCB4P21439 1286 aa11.6□□□□□ -0.55
ACTN1-216ENST00000556083 OAS2P29728 719 aaKnown RBP11.6□□□□□ -0.55
ACTN1-216ENST00000556083 PHKA1P46020 1223 aa11.6□□□□□ -0.55
ACTN1-216ENST00000556083 ALX1Q15699 326 aa11.6□□□□□ -0.55
ACTN1-216ENST00000556083 SLC27A3Q5K4L6 730 aa11.6□□□□□ -0.55
ACTN1-216ENST00000556083 CEP170P1Q96L14 293 aa11.6□□□□□ -0.55
ACTN1-216ENST00000556083 CAPS2Q9BXY5 557 aa11.6□□□□□ -0.55
ACTN1-216ENST00000556083 TLK1Q9UKI8 766 aa11.6□□□□□ -0.55
ACTN1-216ENST00000556083 ANGPTL3Q9Y5C1 460 aa11.6□□□□□ -0.55
ACTN1-216ENST00000556083 ABCB11O95342 1321 aa11.6□□□□□ -0.55
ACTN1-216ENST00000556083 AP3B1O00203 1094 aa11.6□□□□□ -0.55
ACTN1-216ENST00000556083 CHEK2O96017 543 aa11.6□□□□□ -0.55
ACTN1-216ENST00000556083 PAMP19021 973 aa11.6□□□□□ -0.55
ACTN1-216ENST00000556083 U2AF2P26368 475 aaKnown RBP eCLIP11.6□□□□□ -0.551e-13■■■□□ 15
ACTN1-216ENST00000556083 GOLGA8FQ08AF8 430 aa11.6□□□□□ -0.55
ACTN1-216ENST00000556083 GOLGA8DPQ0D2H9 430 aa11.6□□□□□ -0.55
ACTN1-216ENST00000556083 PNMA8AQ86V59 439 aaPredicted RBP11.6□□□□□ -0.55
ACTN1-216ENST00000556083 MAGOHBQ96A72 148 aaKnown RBP11.6□□□□□ -0.55
ACTN1-216ENST00000556083 LRGUKQ96M69 825 aa11.6□□□□□ -0.55
ACTN1-216ENST00000556083 MRGBPQ9NV56 204 aa11.6□□□□□ -0.55
ACTN1-216ENST00000556083 PCDHA5Q9Y5H7 936 aa11.6□□□□□ -0.55
ACTN1-216ENST00000556083 OVOS2A0A0G2JMS6 1433 aa11.6□□□□□ -0.55
ACTN1-216ENST00000556083 OVOS2A0A0J9YW53 1432 aa11.6□□□□□ -0.55
ACTN1-216ENST00000556083 OVOS2Q6IE36 1432 aa11.6□□□□□ -0.55
ACTN1-216ENST00000556083 LTKP29376 864 aa11.6□□□□□ -0.55
ACTN1-216ENST00000556083 UNC5CLQ8IV45 518 aa11.6□□□□□ -0.55
ACTN1-216ENST00000556083 RDH13Q8NBN7 331 aa11.6□□□□□ -0.55
ACTN1-216ENST00000556083 NSUN7Q8NE18 718 aaKnown RBP11.6□□□□□ -0.55
ACTN1-216ENST00000556083 SDR42E1Q8WUS8 393 aa11.6□□□□□ -0.55
ACTN1-216ENST00000556083 MAGEB5Q9BZ81 275 aa11.6□□□□□ -0.55
ACTN1-216ENST00000556083 DISC1Q9NRI5 854 aa11.6□□□□□ -0.55
ACTN1-216ENST00000556083 CA4P22748 312 aa11.6□□□□□ -0.55
ACTN1-216ENST00000556083 KIF23Q02241 960 aaPredicted RBP11.6□□□□□ -0.55
ACTN1-216ENST00000556083 DALRD3Q5D0E6 543 aaKnown RBP11.6□□□□□ -0.55
ACTN1-216ENST00000556083 TRMT44Q8IYL2 757 aaKnown RBP11.6□□□□□ -0.55
ACTN1-216ENST00000556083 TTLL6Q8N841 843 aa11.6□□□□□ -0.55
ACTN1-216ENST00000556083 RBM41Q96IZ5 413 aaKnown RBP11.6□□□□□ -0.55
ACTN1-216ENST00000556083 SCYL1Q96KG9 808 aa11.6□□□□□ -0.55
ACTN1-216ENST00000556083 TRERF1Q96PN7 1200 aa11.6□□□□□ -0.55
ACTN1-216ENST00000556083 EIF2AQ9BY44 585 aaKnown RBP11.6□□□□□ -0.55
ACTN1-216ENST00000556083 SUDS3Q9H7L9 328 aaPredicted RBP11.6□□□□□ -0.55
ACTN1-216ENST00000556083 SLC38A10Q9HBR0 1119 aa11.6□□□□□ -0.55
ACTN1-216ENST00000556083 FANCLQ9NW38 375 aa11.6□□□□□ -0.55
ACTN1-216ENST00000556083 ZNF212Q9UDV6 495 aa11.6□□□□□ -0.55
ACTN1-216ENST00000556083 FEM1BQ9UK73 627 aa11.6□□□□□ -0.55
ACTN1-216ENST00000556083 ORC6Q9Y5N6 252 aa11.6□□□□□ -0.55
ACTN1-216ENST00000556083 CCDC151A5D8V7 595 aa11.59□□□□□ -0.55
ACTN1-216ENST00000556083 SPDYE16A6NNV3 312 aaPredicted RBP11.59□□□□□ -0.55
ACTN1-216ENST00000556083 GSPT1P15170 499 aaKnown RBP11.59□□□□□ -0.55
ACTN1-216ENST00000556083 HOXD10P28358 340 aa11.59□□□□□ -0.55
ACTN1-216ENST00000556083 ECE1P42892 770 aa11.59□□□□□ -0.55
ACTN1-216ENST00000556083 PTH1RQ03431 593 aa11.59□□□□□ -0.55
ACTN1-216ENST00000556083 IQCB1Q15051 598 aa11.59□□□□□ -0.55
ACTN1-216ENST00000556083 SPDYE2Q495Y8 402 aa11.59□□□□□ -0.55
ACTN1-216ENST00000556083 KLC3Q6P597 504 aa11.59□□□□□ -0.55
ACTN1-216ENST00000556083 ZNF653Q96CK0 615 aa11.59□□□□□ -0.55
ACTN1-216ENST00000556083 NUDCD1Q96RS6 583 aa11.59□□□□□ -0.55
ACTN1-216ENST00000556083 SERPINI1Q99574 410 aa11.59□□□□□ -0.55
ACTN1-216ENST00000556083 TTLL3Q9Y4R7 772 aa11.59□□□□□ -0.55
ACTN1-216ENST00000556083 MBD5Q9P267 1494 aa11.59□□□□□ -0.55
ACTN1-216ENST00000556083 INO80B-WBP1J3KQ70 363 aa11.59□□□□□ -0.55
ACTN1-216ENST00000556083 SEC24BO95487 1268 aa11.59□□□□□ -0.55
ACTN1-216ENST00000556083 CPP00450 1065 aa11.59□□□□□ -0.55
ACTN1-216ENST00000556083 JADE1Q6IE81 842 aa11.59□□□□□ -0.55
ACTN1-216ENST00000556083 APOBEC3FQ8IUX4 373 aaKnown RBP11.59□□□□□ -0.55
ACTN1-216ENST00000556083 LINC00301Q8NCQ3 95 aa11.59□□□□□ -0.55
ACTN1-216ENST00000556083 RNF139Q8WU17 664 aa11.59□□□□□ -0.55
ACTN1-216ENST00000556083 EXOC4Q96A65 974 aa11.59□□□□□ -0.55
ACTN1-216ENST00000556083 RPF1Q9H9Y2 349 aaKnown RBP11.59□□□□□ -0.55
ACTN1-216ENST00000556083 SLC39A2Q9NP94 309 aa11.59□□□□□ -0.55
ACTN1-216ENST00000556083 EMILIN3Q9NT22 766 aa11.59□□□□□ -0.55
ACTN1-216ENST00000556083 TMEM63CQ9P1W3 806 aa11.59□□□□□ -0.55
ACTN1-216ENST00000556083 AKT3Q9Y243 479 aa11.59□□□□□ -0.55
ACTN1-216ENST00000556083 SPATA31E1Q6ZUB1 1445 aa11.59□□□□□ -0.55
ACTN1-216ENST00000556083 H7C1W4 665 aa11.59□□□□□ -0.55
ACTN1-216ENST00000556083 ACTN1P12814 892 aa11.59□□□□□ -0.55
ACTN1-216ENST00000556083 MMP14P50281 582 aa11.59□□□□□ -0.55
ACTN1-216ENST00000556083 RAD51AP2Q09MP3 1159 aa11.59□□□□□ -0.55
ACTN1-216ENST00000556083 SCRN1Q12765 414 aa11.59□□□□□ -0.55
ACTN1-216ENST00000556083 KIAA1841Q6NSI8 718 aa11.59□□□□□ -0.55
ACTN1-216ENST00000556083 TRIM72Q6ZMU5 477 aa11.59□□□□□ -0.55
ACTN1-216ENST00000556083 SIX6OS1Q8N1H7 587 aa11.59□□□□□ -0.55
ACTN1-216ENST00000556083 THEM5Q8N1Q8 247 aa11.59□□□□□ -0.55
ACTN1-216ENST00000556083 CCDC127Q96BQ5 260 aa11.59□□□□□ -0.55
ACTN1-216ENST00000556083 FRMPD2Q68DX3 1309 aaPredicted RBP11.59□□□□□ -0.55
ACTN1-216ENST00000556083 TBXAS1P24557 533 aaPredicted RBP11.59□□□□□ -0.55
ACTN1-216ENST00000556083 ELF1P32519 619 aa11.59□□□□□ -0.55
ACTN1-216ENST00000556083 ITKQ08881 620 aa11.59□□□□□ -0.55
ACTN1-216ENST00000556083 FAM173BQ6P4H8 233 aa11.59□□□□□ -0.55
ACTN1-216ENST00000556083 RFX6Q8HWS3 928 aa11.59□□□□□ -0.55
ACTN1-216ENST00000556083 STAG1Q8WVM7 1258 aa11.59□□□□□ -0.55
ACTN1-216ENST00000556083 GBP5Q96PP8 586 aa11.59□□□□□ -0.55
ACTN1-216ENST00000556083 ERVK-7P63135 1459 aa11.58□□□□□ -0.55
ACTN1-216ENST00000556083 PRPSAP2O60256 369 aa11.58□□□□□ -0.56
ACTN1-216ENST00000556083 IRX5P78411 483 aaPredicted RBP11.58□□□□□ -0.56
ACTN1-216ENST00000556083 DRP2Q13474 957 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms