RNA–Protein interactions for RNA: ENST00000555178.5

TDP1-211, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5

Gene TDP1, Length 2,200 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-211ENST00000555178 MORC2Q9Y6X9 1032 aaPredicted RBP12.15□□□□□ -0.46
TDP1-211ENST00000555178 MYH9P35579 1960 aaKnown RBP12.15□□□□□ -0.46
TDP1-211ENST00000555178 IPO5O00410 1097 aaKnown RBP12.15□□□□□ -0.46
TDP1-211ENST00000555178 PSMD10O75832 226 aa12.15□□□□□ -0.46
TDP1-211ENST00000555178 CCNE2O96020 404 aa12.15□□□□□ -0.46
TDP1-211ENST00000555178 HSPA8P11142 646 aaKnown RBP12.15□□□□□ -0.46
TDP1-211ENST00000555178 RGS2P41220 211 aa12.15□□□□□ -0.46
TDP1-211ENST00000555178 CAMK4Q16566 473 aa12.15□□□□□ -0.46
TDP1-211ENST00000555178 ECM1Q16610 540 aa12.15□□□□□ -0.46
TDP1-211ENST00000555178 OTOP1Q7RTM1 612 aa12.15□□□□□ -0.46
TDP1-211ENST00000555178 TEX2Q8IWB9 1127 aa12.15□□□□□ -0.46
TDP1-211ENST00000555178 APBA2Q99767 749 aa12.15□□□□□ -0.46
TDP1-211ENST00000555178 ZNF577Q9BSK1 485 aa12.15□□□□□ -0.46
TDP1-211ENST00000555178 MMTAG2Q9BU76 263 aaKnown RBP12.15□□□□□ -0.46
TDP1-211ENST00000555178 MAF1Q9H063 256 aa12.15□□□□□ -0.46
TDP1-211ENST00000555178 LAD1O00515 517 aa12.14□□□□□ -0.47
TDP1-211ENST00000555178 CHMP2AO43633 222 aa12.14□□□□□ -0.47
TDP1-211ENST00000555178 PRPHP41219 470 aa12.14□□□□□ -0.47
TDP1-211ENST00000555178 SP4Q02446 784 aa12.14□□□□□ -0.47
TDP1-211ENST00000555178 FAM160A1Q05DH4 1040 aa12.14□□□□□ -0.47
TDP1-211ENST00000555178 ORC2Q13416 577 aaPredicted RBP12.14□□□□□ -0.47
TDP1-211ENST00000555178 SKOR2Q2VWA4 1001 aaPredicted RBP12.14□□□□□ -0.47
TDP1-211ENST00000555178 CCDC62Q6P9F0 684 aa12.14□□□□□ -0.47
TDP1-211ENST00000555178 CCDC73Q6ZRK6 1079 aa12.14□□□□□ -0.47
TDP1-211ENST00000555178 ZNF467Q7Z7K2 595 aaPredicted RBP12.14□□□□□ -0.47
TDP1-211ENST00000555178 ZNF579Q8NAF0 562 aaKnown RBP12.14□□□□□ -0.47
TDP1-211ENST00000555178 ERCC4Q92889 916 aaPredicted RBP12.14□□□□□ -0.47
TDP1-211ENST00000555178 PLIN2Q99541 437 aa12.14□□□□□ -0.47
TDP1-211ENST00000555178 BEGAINQ9BUH8 593 aa12.14□□□□□ -0.47
TDP1-211ENST00000555178 UNC45AQ9H3U1 944 aa12.14□□□□□ -0.47
TDP1-211ENST00000555178 DIS3Q9Y2L1 958 aaKnown RBP12.14□□□□□ -0.47
TDP1-211ENST00000555178 MARCH6O60337 910 aa12.14□□□□□ -0.47
TDP1-211ENST00000555178 ZNF865P0CJ78 1059 aaPredicted RBP12.14□□□□□ -0.47
TDP1-211ENST00000555178 HSPA1AP0DMV8 641 aaKnown RBP12.14□□□□□ -0.47
TDP1-211ENST00000555178 HSPA1BP0DMV9 641 aaKnown RBP12.14□□□□□ -0.47
TDP1-211ENST00000555178 UBA1P22314 1058 aaKnown RBP12.14□□□□□ -0.47
TDP1-211ENST00000555178 LBX1P52954 281 aa12.14□□□□□ -0.47
TDP1-211ENST00000555178 ZRSR1Q15695 479 aaKnown RBP12.14□□□□□ -0.47
TDP1-211ENST00000555178 B3GNT9Q6UX72 402 aa12.14□□□□□ -0.47
TDP1-211ENST00000555178 SOCS4Q8WXH5 440 aa12.14□□□□□ -0.47
TDP1-211ENST00000555178 DDX41Q9UJV9 622 aaKnown RBP12.14□□□□□ -0.47
TDP1-211ENST00000555178 ZHX1Q9UKY1 873 aaPredicted RBP12.14□□□□□ -0.47
TDP1-211ENST00000555178 KCNH3Q9ULD8 1083 aa12.14□□□□□ -0.47
TDP1-211ENST00000555178 TRIM17Q9Y577 477 aa12.14□□□□□ -0.47
TDP1-211ENST00000555178 ASB14A6NK59 587 aa12.13□□□□□ -0.47
TDP1-211ENST00000555178 ACVR2BQ13705 512 aa12.13□□□□□ -0.47
TDP1-211ENST00000555178 KIF22Q14807 665 aa12.13□□□□□ -0.47
TDP1-211ENST00000555178 KARSQ15046 597 aaKnown RBP12.13□□□□□ -0.47
TDP1-211ENST00000555178 CCDC144BQ3MJ40 725 aa12.13□□□□□ -0.47
TDP1-211ENST00000555178 LRCH2Q5VUJ6 765 aa12.13□□□□□ -0.47
TDP1-211ENST00000555178 OLFML2BQ68BL8 750 aa12.13□□□□□ -0.47
TDP1-211ENST00000555178 CYFIP1Q7L576 1253 aa12.13□□□□□ -0.47
TDP1-211ENST00000555178 NIPA1Q7RTP0 329 aa12.13□□□□□ -0.47
TDP1-211ENST00000555178 IGSF22Q8N9C0 903 aa12.13□□□□□ -0.47
TDP1-211ENST00000555178 GPRASP2Q96D09 838 aa12.13□□□□□ -0.47
TDP1-211ENST00000555178 NAP1L4Q99733 375 aaKnown RBP12.13□□□□□ -0.47
TDP1-211ENST00000555178 PCDHA12Q9UN75 941 aa12.13□□□□□ -0.47
TDP1-211ENST00000555178 PTCH2Q9Y6C5 1203 aa12.13□□□□□ -0.47
TDP1-211ENST00000555178 FAM237AA0A1B0GTK4 181 aa12.13□□□□□ -0.47
TDP1-211ENST00000555178 POLR2DO15514 142 aaKnown RBP12.13□□□□□ -0.47
TDP1-211ENST00000555178 ZNF202O95125 648 aa12.13□□□□□ -0.47
TDP1-211ENST00000555178 SMPD1P17405 629 aa12.13□□□□□ -0.47
TDP1-211ENST00000555178 CCND3P30281 292 aaPredicted RBP12.13□□□□□ -0.47
TDP1-211ENST00000555178 ICAM3P32942 547 aa12.13□□□□□ -0.47
TDP1-211ENST00000555178 LONP1P36776 959 aaKnown RBP12.13□□□□□ -0.47
TDP1-211ENST00000555178 SYKP43405 635 aa12.13□□□□□ -0.47
TDP1-211ENST00000555178 FXR2P51116 673 aaKnown RBP eCLIP12.13□□□□□ -0.47
TDP1-211ENST00000555178 CACNB2Q08289 660 aaPredicted RBP12.13□□□□□ -0.47
TDP1-211ENST00000555178 ZSCAN23Q3MJ62 389 aa12.13□□□□□ -0.47
TDP1-211ENST00000555178 XRRA1Q6P2D8 792 aa12.13□□□□□ -0.47
TDP1-211ENST00000555178 ERO1AQ96HE7 468 aa12.13□□□□□ -0.47
TDP1-211ENST00000555178 RGL1Q9NZL6 768 aa12.13□□□□□ -0.47
TDP1-211ENST00000555178 WRAP73Q9P2S5 460 aaPredicted RBP12.13□□□□□ -0.47
TDP1-211ENST00000555178 FRMPD3Q5JV73 1810 aa12.12□□□□□ -0.47
TDP1-211ENST00000555178 SYNGAP1Q96PV0 1343 aa12.12□□□□□ -0.47
TDP1-211ENST00000555178 ZBTB39O15060 712 aa12.12□□□□□ -0.47
TDP1-211ENST00000555178 ADCY3O60266 1144 aa12.12□□□□□ -0.47
TDP1-211ENST00000555178 XRCC5P13010 732 aaKnown RBP12.12□□□□□ -0.47
TDP1-211ENST00000555178 LONRF3Q496Y0 759 aa12.12□□□□□ -0.47
TDP1-211ENST00000555178 NCAPH2Q6IBW4 605 aa12.12□□□□□ -0.47
TDP1-211ENST00000555178 GRAMD1CQ8IYS0 662 aa12.12□□□□□ -0.47
TDP1-211ENST00000555178 SH3TC2Q8TF17 1288 aa12.12□□□□□ -0.47
TDP1-211ENST00000555178 DHX58Q96C10 678 aa12.12□□□□□ -0.47
TDP1-211ENST00000555178 MKI67P46013 3256 aaKnown RBP12.12□□□□□ -0.47
TDP1-211ENST00000555178 RBM47A0AV96 593 aaKnown RBP12.11□□□□□ -0.47
TDP1-211ENST00000555178 GAS7O60861 476 aa12.11□□□□□ -0.47
TDP1-211ENST00000555178 MED24O75448 989 aa12.11□□□□□ -0.47
TDP1-211ENST00000555178 GGPS1O95749 300 aa12.11□□□□□ -0.47
TDP1-211ENST00000555178 MYCP01106 439 aaPredicted RBP12.11□□□□□ -0.47
TDP1-211ENST00000555178 TXNP10599 105 aaKnown RBP12.11□□□□□ -0.47
TDP1-211ENST00000555178 SETQ01105 290 aaPredicted RBP12.11□□□□□ -0.47
TDP1-211ENST00000555178 UGCGQ16739 394 aa12.11□□□□□ -0.47
TDP1-211ENST00000555178 HSDL1Q3SXM5 330 aa12.11□□□□□ -0.47
TDP1-211ENST00000555178 KCNK18Q7Z418 384 aa12.11□□□□□ -0.47
TDP1-211ENST00000555178 NLRX1Q86UT6 975 aa12.11□□□□□ -0.47
TDP1-211ENST00000555178 PPP1R13LQ8WUF5 828 aa12.11□□□□□ -0.47
TDP1-211ENST00000555178 PNMA5Q96PV4 448 aa12.11□□□□□ -0.47
TDP1-211ENST00000555178 FAM13BQ9NYF5 915 aa12.11□□□□□ -0.47
TDP1-211ENST00000555178 LRWD1Q9UFC0 647 aa12.11□□□□□ -0.47
TDP1-211ENST00000555178 SYCE3A1L190 88 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms