RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 YEATS4O95619 227 aa12.68□□□□□ -0.38
SHMT2-216ENST00000554975 MYL3P08590 195 aa12.68□□□□□ -0.38
SHMT2-216ENST00000554975 SUPT20HL2P0C7V6 817 aa12.68□□□□□ -0.38
SHMT2-216ENST00000554975 TSPY3P0CV98 308 aa12.68□□□□□ -0.38
SHMT2-216ENST00000554975 TSPY8P0CW00 308 aa12.68□□□□□ -0.38
SHMT2-216ENST00000554975 PCP11498 1178 aaKnown RBP12.68□□□□□ -0.38
SHMT2-216ENST00000554975 RFC2P35250 354 aa12.68□□□□□ -0.38
SHMT2-216ENST00000554975 OAZ1P54368 228 aa12.68□□□□□ -0.38
SHMT2-216ENST00000554975 WDR5P61964 334 aaKnown RBP12.68□□□□□ -0.38
SHMT2-216ENST00000554975 CTDSPL2Q05D32 466 aa12.68□□□□□ -0.38
SHMT2-216ENST00000554975 NBPF20Q3BBV1 942 aa12.68□□□□□ -0.38
SHMT2-216ENST00000554975 MUM1L1Q5H9M0 696 aa12.68□□□□□ -0.38
SHMT2-216ENST00000554975 FAM47CQ5HY64 1035 aa12.68□□□□□ -0.38
SHMT2-216ENST00000554975 PTCRAQ6ISU1 281 aaPredicted RBP12.68□□□□□ -0.38
SHMT2-216ENST00000554975 POTEBQ6S5H4 581 aa12.68□□□□□ -0.38
SHMT2-216ENST00000554975 HFE2Q6ZVN8 426 aa12.68□□□□□ -0.38
SHMT2-216ENST00000554975 KCNG4Q8TDN1 519 aa12.68□□□□□ -0.38
SHMT2-216ENST00000554975 WASF1Q92558 559 aa12.68□□□□□ -0.38
SHMT2-216ENST00000554975 CEP95Q96GE4 821 aa12.68□□□□□ -0.38
SHMT2-216ENST00000554975 C8orf76Q96K31 380 aa12.68□□□□□ -0.38
SHMT2-216ENST00000554975 LRRC2Q9BYS8 371 aa12.68□□□□□ -0.38
SHMT2-216ENST00000554975 TOMM22Q9NS69 142 aa12.68□□□□□ -0.38
SHMT2-216ENST00000554975 USP25Q9UHP3 1055 aa12.68□□□□□ -0.38
SHMT2-216ENST00000554975 KMT2EQ8IZD2 1858 aa12.68□□□□□ -0.38
SHMT2-216ENST00000554975 GRXCR2A6NFK2 248 aa12.67□□□□□ -0.38
SHMT2-216ENST00000554975 FOXP2O15409 715 aa12.67□□□□□ -0.38
SHMT2-216ENST00000554975 DCXO43602 365 aa12.67□□□□□ -0.38
SHMT2-216ENST00000554975 KINO60870 393 aaKnown RBP12.67□□□□□ -0.38
SHMT2-216ENST00000554975 ALADP13716 330 aa12.67□□□□□ -0.38
SHMT2-216ENST00000554975 DUSP28Q4G0W2 176 aa12.67□□□□□ -0.38
SHMT2-216ENST00000554975 SASS6Q6UVJ0 657 aa12.67□□□□□ -0.38
SHMT2-216ENST00000554975 SYNE3Q6ZMZ3 975 aa12.67□□□□□ -0.38
SHMT2-216ENST00000554975 RASGRP2Q7LDG7 609 aa12.67□□□□□ -0.38
SHMT2-216ENST00000554975 SGMS1Q86VZ5 419 aa12.67□□□□□ -0.38
SHMT2-216ENST00000554975 TRERF1Q96PN7 1200 aa12.67□□□□□ -0.38
SHMT2-216ENST00000554975 CTAGE1Q96RT6 745 aa12.67□□□□□ -0.38
SHMT2-216ENST00000554975 CYP39A1Q9NYL5 469 aa12.67□□□□□ -0.38
SHMT2-216ENST00000554975 RCOR1Q9UKL0 485 aa12.67□□□□□ -0.38
SHMT2-216ENST00000554975 CACNA1HO95180 2353 aa12.66□□□□□ -0.38
SHMT2-216ENST00000554975 LINC01553A4QN01 128 aa12.66□□□□□ -0.38
SHMT2-216ENST00000554975 H3BQ06 376 aaPredicted RBP12.66□□□□□ -0.38
SHMT2-216ENST00000554975 PITPNM1O00562 1244 aa12.66□□□□□ -0.38
SHMT2-216ENST00000554975 SH2B2O14492 632 aaPredicted RBP12.66□□□□□ -0.38
SHMT2-216ENST00000554975 BAIAP3O94812 1187 aa12.66□□□□□ -0.38
SHMT2-216ENST00000554975 ALAS1P13196 640 aa12.66□□□□□ -0.38
SHMT2-216ENST00000554975 LIFRP42702 1097 aa12.66□□□□□ -0.38
SHMT2-216ENST00000554975 KCNJ6P48051 423 aa12.66□□□□□ -0.38
SHMT2-216ENST00000554975 METAP2P50579 478 aaKnown RBP eCLIP12.66□□□□□ -0.381e-6■■■□□ 18.9
SHMT2-216ENST00000554975 TERF1P54274 439 aa12.66□□□□□ -0.38
SHMT2-216ENST00000554975 HAND2P61296 217 aa12.66□□□□□ -0.38
SHMT2-216ENST00000554975 ERVK-21P61565 698 aa12.66□□□□□ -0.38
SHMT2-216ENST00000554975 CCT2P78371 535 aaKnown RBP12.66□□□□□ -0.38
SHMT2-216ENST00000554975 TFAP4Q01664 338 aa12.66□□□□□ -0.38
SHMT2-216ENST00000554975 TYRO3Q06418 890 aa12.66□□□□□ -0.38
SHMT2-216ENST00000554975 TRIM29Q14134 588 aa12.66□□□□□ -0.38
SHMT2-216ENST00000554975 RRP12Q5JTH9 1297 aaKnown RBP12.66□□□□□ -0.38
SHMT2-216ENST00000554975 MORC4Q8TE76 937 aa12.66□□□□□ -0.38
SHMT2-216ENST00000554975 MKL1Q969V6 931 aa12.66□□□□□ -0.38
SHMT2-216ENST00000554975 MTG1Q9BT17 334 aaPredicted RBP12.66□□□□□ -0.38
SHMT2-216ENST00000554975 WDR11Q9BZH6 1224 aa12.66□□□□□ -0.38
SHMT2-216ENST00000554975 VTA1Q9NP79 307 aa12.66□□□□□ -0.38
SHMT2-216ENST00000554975 POLR3EQ9NVU0 708 aa12.66□□□□□ -0.38
SHMT2-216ENST00000554975 DACT1Q9NYF0 836 aa12.66□□□□□ -0.38
SHMT2-216ENST00000554975 ORC3Q9UBD5 711 aaPredicted RBP12.66□□□□□ -0.38
SHMT2-216ENST00000554975 MYH7BA7E2Y1 1941 aa12.66□□□□□ -0.38
SHMT2-216ENST00000554975 KIAA1217Q5T5P2 1943 aa12.65□□□□□ -0.38
SHMT2-216ENST00000554975 CCDC196A0A1B0GTZ2 297 aa12.65□□□□□ -0.38
SHMT2-216ENST00000554975 A0A1W2PQ27 194 aa12.65□□□□□ -0.38
SHMT2-216ENST00000554975 A0A1W2PQ64 194 aa12.65□□□□□ -0.38
SHMT2-216ENST00000554975 A0A1W2PQD8 194 aa12.65□□□□□ -0.38
SHMT2-216ENST00000554975 ERICH2A1L162 156 aa12.65□□□□□ -0.38
SHMT2-216ENST00000554975 TSPY2A6NKD2 308 aa12.65□□□□□ -0.38
SHMT2-216ENST00000554975 TMEM232C9JQI7 657 aa12.65□□□□□ -0.38
SHMT2-216ENST00000554975 RANBP6O60518 1105 aaKnown RBP12.65□□□□□ -0.38
SHMT2-216ENST00000554975 CTDNEP1O95476 244 aa12.65□□□□□ -0.38
SHMT2-216ENST00000554975 BMP3P12645 472 aa12.65□□□□□ -0.38
SHMT2-216ENST00000554975 FAM160A1Q05DH4 1040 aa12.65□□□□□ -0.38
SHMT2-216ENST00000554975 PPP2R5BQ15173 497 aa12.65□□□□□ -0.38
SHMT2-216ENST00000554975 SLFN13Q68D06 897 aa12.65□□□□□ -0.38
SHMT2-216ENST00000554975 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.65□□□□□ -0.38
SHMT2-216ENST00000554975 TMTC2Q8N394 836 aa12.65□□□□□ -0.38
SHMT2-216ENST00000554975 RETREG2Q8NC44 543 aa12.65□□□□□ -0.38
SHMT2-216ENST00000554975 GMCL1P1Q8NEA9 526 aa12.65□□□□□ -0.38
SHMT2-216ENST00000554975 OR6J1Q8NGC5 347 aa12.65□□□□□ -0.38
SHMT2-216ENST00000554975 NEK9Q8TD19 979 aa12.65□□□□□ -0.38
SHMT2-216ENST00000554975 STAG1Q8WVM7 1258 aa12.65□□□□□ -0.38
SHMT2-216ENST00000554975 COPS5Q92905 334 aa12.65□□□□□ -0.38
SHMT2-216ENST00000554975 TGS1Q96RS0 853 aaKnown RBP12.65□□□□□ -0.38
SHMT2-216ENST00000554975 INCENPQ9NQS7 918 aa12.65□□□□□ -0.38
SHMT2-216ENST00000554975 MTMR4Q9NYA4 1195 aa12.65□□□□□ -0.38
SHMT2-216ENST00000554975 ZBTB43O43298 467 aa12.64□□□□□ -0.39
SHMT2-216ENST00000554975 KDM4AO75164 1064 aa12.64□□□□□ -0.39
SHMT2-216ENST00000554975 GJB5O95377 273 aa12.64□□□□□ -0.39
SHMT2-216ENST00000554975 TPM2P07951 284 aa12.64□□□□□ -0.39
SHMT2-216ENST00000554975 ANTXR2P58335 489 aa12.64□□□□□ -0.39
SHMT2-216ENST00000554975 ZP2Q05996 745 aa12.64□□□□□ -0.39
SHMT2-216ENST00000554975 COL9A3Q14050 684 aaPredicted RBP12.64□□□□□ -0.39
SHMT2-216ENST00000554975 STK38Q15208 465 aa12.64□□□□□ -0.39
SHMT2-216ENST00000554975 STX1AQ16623 288 aa12.64□□□□□ -0.39
SHMT2-216ENST00000554975 FAM117BQ6P1L5 589 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms