RNA–Protein interactions for RNA: ENST00000554785.1

PRPF39-208, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 2,121 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-208ENST00000554785 KDM2BQ8NHM5 1336 aa2.24□□□□□ -2.05
PRPF39-208ENST00000554785 KIF13AQ9H1H9 1805 aa2.24□□□□□ -2.05
PRPF39-208ENST00000554785 A0A1W2PQU0 124 aa2.24□□□□□ -2.05
PRPF39-208ENST00000554785 C1QTNF3-AMACRE9PGA6 284 aa2.24□□□□□ -2.05
PRPF39-208ENST00000554785 DIAPH1O60610 1272 aaKnown RBP2.24□□□□□ -2.05
PRPF39-208ENST00000554785 ZBTB7AO95365 584 aa2.24□□□□□ -2.05
PRPF39-208ENST00000554785 ITGA1P56199 1179 aa2.24□□□□□ -2.05
PRPF39-208ENST00000554785 PPP2R2AP63151 447 aa2.24□□□□□ -2.05
PRPF39-208ENST00000554785 SSRP1Q08945 709 aaKnown RBP2.24□□□□□ -2.05
PRPF39-208ENST00000554785 SLC35F1Q5T1Q4 408 aa2.24□□□□□ -2.05
PRPF39-208ENST00000554785 ETV3LQ6ZN32 361 aa2.24□□□□□ -2.05
PRPF39-208ENST00000554785 JAZF1Q86VZ6 243 aa2.24□□□□□ -2.05
PRPF39-208ENST00000554785 MIB1Q86YT6 1006 aa2.24□□□□□ -2.05
PRPF39-208ENST00000554785 RBM12BQ8IXT5 1001 aaKnown RBP2.24□□□□□ -2.05
PRPF39-208ENST00000554785 PPIL6Q8IXY8 311 aa2.24□□□□□ -2.05
PRPF39-208ENST00000554785 LRRC47Q8N1G4 583 aaKnown RBP2.24□□□□□ -2.05
PRPF39-208ENST00000554785 LILRB2Q8N423 598 aa2.24□□□□□ -2.05
PRPF39-208ENST00000554785 TTC9BQ8N6N2 239 aa2.24□□□□□ -2.05
PRPF39-208ENST00000554785 SGSM3Q96HU1 749 aa2.24□□□□□ -2.05
PRPF39-208ENST00000554785 RNPC3Q96LT9 517 aaKnown RBP2.24□□□□□ -2.05
PRPF39-208ENST00000554785 BDH2Q9BUT1 245 aa2.24□□□□□ -2.05
PRPF39-208ENST00000554785 SPATA9Q9BWV2 254 aa2.24□□□□□ -2.05
PRPF39-208ENST00000554785 RBPJLQ9UBG7 517 aa2.24□□□□□ -2.05
PRPF39-208ENST00000554785 PPARGC1AQ9UBK2 798 aaKnown RBP2.24□□□□□ -2.05
PRPF39-208ENST00000554785 TBX22Q9Y458 520 aa2.24□□□□□ -2.05
PRPF39-208ENST00000554785 MRPL42Q9Y6G3 142 aaKnown RBP2.24□□□□□ -2.05
PRPF39-208ENST00000554785 AQRO60306 1485 aaKnown RBP eCLIP2.24□□□□□ -2.052e-7■□□□□ 8.7
PRPF39-208ENST00000554785 MEFVO15553 781 aaPredicted RBP2.23□□□□□ -2.05
PRPF39-208ENST00000554785 CYP2C8P10632 490 aa2.23□□□□□ -2.05
PRPF39-208ENST00000554785 KCNJ6P48051 423 aa2.23□□□□□ -2.05
PRPF39-208ENST00000554785 RPL11P62913 178 aaKnown RBP2.23□□□□□ -2.05
PRPF39-208ENST00000554785 ADAM9Q13443 819 aa2.23□□□□□ -2.05
PRPF39-208ENST00000554785 PRR31Q5SQ13 230 aa2.23□□□□□ -2.05
PRPF39-208ENST00000554785 YOD1Q5VVQ6 348 aaPredicted RBP2.23□□□□□ -2.05
PRPF39-208ENST00000554785 E4F1Q66K89 784 aaPredicted RBP2.23□□□□□ -2.05
PRPF39-208ENST00000554785 SDE2Q6IQ49 451 aa2.23□□□□□ -2.05
PRPF39-208ENST00000554785 DCP2Q8IU60 420 aaKnown RBP2.23□□□□□ -2.05
PRPF39-208ENST00000554785 RIOX2Q8IUF8 465 aa2.23□□□□□ -2.05
PRPF39-208ENST00000554785 CRACR2BQ8N4Y2 399 aaPredicted RBP2.23□□□□□ -2.05
PRPF39-208ENST00000554785 SH3TC2Q8TF17 1288 aa2.23□□□□□ -2.05
PRPF39-208ENST00000554785 THAP3Q8WTV1 239 aaPredicted RBP2.23□□□□□ -2.05
PRPF39-208ENST00000554785 TRMT2BQ96GJ1 504 aaKnown RBP2.23□□□□□ -2.05
PRPF39-208ENST00000554785 TMEM169Q96HH4 297 aa2.23□□□□□ -2.05
PRPF39-208ENST00000554785 IER2Q9BTL4 223 aa2.23□□□□□ -2.05
PRPF39-208ENST00000554785 JAM3Q9BX67 310 aa2.23□□□□□ -2.05
PRPF39-208ENST00000554785 NPFFR2Q9Y5X5 522 aa2.23□□□□□ -2.05
PRPF39-208ENST00000554785 TCRBV5S2A0A599 114 aa2.23□□□□□ -2.05
PRPF39-208ENST00000554785 BLACEA4D250 179 aa2.23□□□□□ -2.05
PRPF39-208ENST00000554785 DLX3O60479 287 aa2.23□□□□□ -2.05
PRPF39-208ENST00000554785 FAM153BP0C7A2 387 aa2.23□□□□□ -2.05
PRPF39-208ENST00000554785 INSRRP14616 1297 aa2.23□□□□□ -2.05
PRPF39-208ENST00000554785 CNR2P34972 360 aa2.23□□□□□ -2.05
PRPF39-208ENST00000554785 THBS2P35442 1172 aa2.23□□□□□ -2.05
PRPF39-208ENST00000554785 LTBRP36941 435 aa2.23□□□□□ -2.05
PRPF39-208ENST00000554785 MAGEA10P43363 369 aaPredicted RBP2.23□□□□□ -2.05
PRPF39-208ENST00000554785 SLC6A11P48066 632 aa2.23□□□□□ -2.05
PRPF39-208ENST00000554785 SARSP49591 514 aaKnown RBP2.23□□□□□ -2.05
PRPF39-208ENST00000554785 PURAQ00577 322 aaKnown RBP2.23□□□□□ -2.05
PRPF39-208ENST00000554785 HSP90AA2PQ14568 343 aaPredicted RBP2.23□□□□□ -2.05
PRPF39-208ENST00000554785 PUM1Q14671 1186 aaKnown RBP eCLIP2.23□□□□□ -2.05
PRPF39-208ENST00000554785 TESK1Q15569 626 aa2.23□□□□□ -2.05
PRPF39-208ENST00000554785 C2orf27AQ580R0 203 aa2.23□□□□□ -2.05
PRPF39-208ENST00000554785 ACBD5Q5T8D3 534 aaPredicted RBP2.23□□□□□ -2.05
PRPF39-208ENST00000554785 MROH9Q5TGP6 573 aa2.23□□□□□ -2.05
PRPF39-208ENST00000554785 MCTP2Q6DN12 878 aa2.23□□□□□ -2.05
PRPF39-208ENST00000554785 IQCEQ6IPM2 695 aa2.23□□□□□ -2.05
PRPF39-208ENST00000554785 KRTAP5-1Q6L8H4 278 aa2.23□□□□□ -2.05
PRPF39-208ENST00000554785 JMYQ8N9B5 988 aa2.23□□□□□ -2.05
PRPF39-208ENST00000554785 ZBTB38Q8NAP3 1195 aaPredicted RBP2.23□□□□□ -2.05
PRPF39-208ENST00000554785 ADAMTS17Q8TE56 1095 aa2.23□□□□□ -2.05
PRPF39-208ENST00000554785 PPIL4Q8WUA2 492 aaKnown RBP eCLIP2.23□□□□□ -2.05
PRPF39-208ENST00000554785 SEC14L1Q92503 715 aa2.23□□□□□ -2.05
PRPF39-208ENST00000554785 KANSL2Q9H9L4 492 aa2.23□□□□□ -2.05
PRPF39-208ENST00000554785 NTMQ9P121 344 aa2.23□□□□□ -2.05
PRPF39-208ENST00000554785 ERCC6L2Q5T890 1561 aa2.22□□□□□ -2.05
PRPF39-208ENST00000554785 HECW2Q9P2P5 1572 aa2.22□□□□□ -2.05
PRPF39-208ENST00000554785 DDX3XO00571 662 aaKnown RBP eCLIP2.22□□□□□ -2.05
PRPF39-208ENST00000554785 ADCY3O60266 1144 aa2.22□□□□□ -2.05
PRPF39-208ENST00000554785 TADA3O75528 432 aa2.22□□□□□ -2.05
PRPF39-208ENST00000554785 CPP00450 1065 aa2.22□□□□□ -2.05
PRPF39-208ENST00000554785 LRG1P02750 347 aa2.22□□□□□ -2.05
PRPF39-208ENST00000554785 RPL13P26373 211 aaKnown RBP2.22□□□□□ -2.05
PRPF39-208ENST00000554785 LSAMPQ13449 338 aa2.22□□□□□ -2.05
PRPF39-208ENST00000554785 NTRK3Q16288 839 aa2.22□□□□□ -2.05
PRPF39-208ENST00000554785 LONRF2Q1L5Z9 754 aa2.22□□□□□ -2.05
PRPF39-208ENST00000554785 ZC3H12BQ5HYM0 836 aaKnown RBP2.22□□□□□ -2.05
PRPF39-208ENST00000554785 UBXN11Q5T124 520 aa2.22□□□□□ -2.05
PRPF39-208ENST00000554785 PHF19Q5T6S3 580 aa2.22□□□□□ -2.05
PRPF39-208ENST00000554785 KCNT2Q6UVM3 1135 aa2.22□□□□□ -2.05
PRPF39-208ENST00000554785 HHIPL2Q6UWX4 724 aa2.22□□□□□ -2.05
PRPF39-208ENST00000554785 USP51Q70EK9 711 aa2.22□□□□□ -2.05
PRPF39-208ENST00000554785 FAM177A1Q8N128 213 aaPredicted RBP2.22□□□□□ -2.05
PRPF39-208ENST00000554785 KYQ8NBH2 561 aa2.22□□□□□ -2.05
PRPF39-208ENST00000554785 CLEC4DQ8WXI8 215 aa2.22□□□□□ -2.05
PRPF39-208ENST00000554785 CHAMP1Q96JM3 812 aa2.22□□□□□ -2.05
PRPF39-208ENST00000554785 ZSWIM3Q96MP5 696 aa2.22□□□□□ -2.05
PRPF39-208ENST00000554785 RBM15Q96T37 977 aaKnown RBP eCLIP2.22□□□□□ -2.05
PRPF39-208ENST00000554785 AARSD1Q9BTE6 412 aaKnown RBP2.22□□□□□ -2.05
PRPF39-208ENST00000554785 AP5M1Q9H0R1 490 aa2.22□□□□□ -2.05
PRPF39-208ENST00000554785 ARHGEF4Q9NR80 690 aa2.22□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms