RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 TMEM260Q9NX78 707 aa11.78□□□□□ -0.52
CCDC88C-206ENST00000553437 ESYT2A0FGR8 921 aa11.77□□□□□ -0.53
CCDC88C-206ENST00000553437 PPFIA3O75145 1194 aa11.77□□□□□ -0.53
CCDC88C-206ENST00000553437 SEC24BO95487 1268 aa11.77□□□□□ -0.53
CCDC88C-206ENST00000553437 FOSP01100 380 aaPredicted RBP11.77□□□□□ -0.53
CCDC88C-206ENST00000553437 ACRP10323 421 aa11.77□□□□□ -0.53
CCDC88C-206ENST00000553437 KCNA2P16389 499 aa11.77□□□□□ -0.53
CCDC88C-206ENST00000553437 CCL23P55773 120 aa11.77□□□□□ -0.53
CCDC88C-206ENST00000553437 ANAPC15P60006 121 aa11.77□□□□□ -0.53
CCDC88C-206ENST00000553437 CCT2P78371 535 aaKnown RBP11.77□□□□□ -0.53
CCDC88C-206ENST00000553437 MFSD10Q14728 455 aa11.77□□□□□ -0.53
CCDC88C-206ENST00000553437 KIAA0753Q2KHM9 967 aa11.77□□□□□ -0.53
CCDC88C-206ENST00000553437 RASIP1Q5U651 963 aa11.77□□□□□ -0.53
CCDC88C-206ENST00000553437 NLRX1Q86UT6 975 aa11.77□□□□□ -0.53
CCDC88C-206ENST00000553437 CYP2W1Q8TAV3 490 aa11.77□□□□□ -0.53
CCDC88C-206ENST00000553437 PGBD1Q96JS3 809 aa11.77□□□□□ -0.53
CCDC88C-206ENST00000553437 GPR20Q99678 358 aa11.77□□□□□ -0.53
CCDC88C-206ENST00000553437 RNF26Q9BY78 433 aaPredicted RBP11.77□□□□□ -0.53
CCDC88C-206ENST00000553437 ANO3Q9BYT9 981 aa11.77□□□□□ -0.53
CCDC88C-206ENST00000553437 ZMYND12Q9H0C1 365 aa11.77□□□□□ -0.53
CCDC88C-206ENST00000553437 GLT8D2Q9H1C3 349 aa11.77□□□□□ -0.53
CCDC88C-206ENST00000553437 IL23AQ9NPF7 189 aa11.77□□□□□ -0.53
CCDC88C-206ENST00000553437 HDAC6Q9UBN7 1215 aa11.77□□□□□ -0.53
CCDC88C-206ENST00000553437 GTF2IRD1Q9UHL9 959 aa11.77□□□□□ -0.53
CCDC88C-206ENST00000553437 EYSQ5T1H1 3165 aa11.77□□□□□ -0.53
CCDC88C-206ENST00000553437 SCN10AQ9Y5Y9 1956 aa11.76□□□□□ -0.53
CCDC88C-206ENST00000553437 LGALS2P05162 132 aa11.76□□□□□ -0.53
CCDC88C-206ENST00000553437 SREBF1P36956 1147 aa11.76□□□□□ -0.53
CCDC88C-206ENST00000553437 CHMP4BP1P59074 171 aa11.76□□□□□ -0.53
CCDC88C-206ENST00000553437 AP3B2Q13367 1082 aa11.76□□□□□ -0.53
CCDC88C-206ENST00000553437 HIC1Q14526 733 aa11.76□□□□□ -0.53
CCDC88C-206ENST00000553437 PTGISQ16647 500 aa11.76□□□□□ -0.53
CCDC88C-206ENST00000553437 ZNF365Q70YC5 407 aa11.76□□□□□ -0.53
CCDC88C-206ENST00000553437 CRYGNQ8WXF5 182 aa11.76□□□□□ -0.53
CCDC88C-206ENST00000553437 DHX38Q92620 1227 aaKnown RBP11.76□□□□□ -0.53
CCDC88C-206ENST00000553437 SCLYQ96I15 445 aa11.76□□□□□ -0.53
CCDC88C-206ENST00000553437 CDHR1Q96JP9 859 aa11.76□□□□□ -0.53
CCDC88C-206ENST00000553437 RNPC3Q96LT9 517 aaKnown RBP11.76□□□□□ -0.53
CCDC88C-206ENST00000553437 MXRA8Q9BRK3 442 aa11.76□□□□□ -0.53
CCDC88C-206ENST00000553437 ALG1Q9BT22 464 aa11.76□□□□□ -0.53
CCDC88C-206ENST00000553437 KATNAL1Q9BW62 490 aa11.76□□□□□ -0.53
CCDC88C-206ENST00000553437 SLC26A6Q9BXS9 759 aa11.76□□□□□ -0.53
CCDC88C-206ENST00000553437 MYH6P13533 1939 aa11.76□□□□□ -0.53
CCDC88C-206ENST00000553437 POTEMA6NI47 508 aa11.75□□□□□ -0.53
CCDC88C-206ENST00000553437 MEIS1O00470 390 aa11.75□□□□□ -0.53
CCDC88C-206ENST00000553437 NOP56O00567 594 aaKnown RBP11.75□□□□□ -0.53
CCDC88C-206ENST00000553437 MAFGO15525 162 aa11.75□□□□□ -0.53
CCDC88C-206ENST00000553437 HOXC8P31273 242 aa11.75□□□□□ -0.53
CCDC88C-206ENST00000553437 SMAD3P84022 425 aaKnown RBP11.75□□□□□ -0.53
CCDC88C-206ENST00000553437 MTMR1Q13613 665 aa11.75□□□□□ -0.53
CCDC88C-206ENST00000553437 JAKMIP3Q5VZ66 844 aa11.75□□□□□ -0.53
CCDC88C-206ENST00000553437 FAM109BQ6ICB4 259 aaPredicted RBP11.75□□□□□ -0.53
CCDC88C-206ENST00000553437 Q7L0L9 218 aa11.75□□□□□ -0.53
CCDC88C-206ENST00000553437 C7orf31Q8N865 590 aa11.75□□□□□ -0.53
CCDC88C-206ENST00000553437 GIMAP8Q8ND71 665 aaPredicted RBP11.75□□□□□ -0.53
CCDC88C-206ENST00000553437 EHMT1Q9H9B1 1298 aa11.75□□□□□ -0.53
CCDC88C-206ENST00000553437 KCNH7Q9NS40 1196 aa11.75□□□□□ -0.53
CCDC88C-206ENST00000553437 TPCN1Q9ULQ1 816 aa11.75□□□□□ -0.53
CCDC88C-206ENST00000553437 GSTTP1A0A1W2PQM5 241 aa11.74□□□□□ -0.53
CCDC88C-206ENST00000553437 H3BRB1 525 aa11.74□□□□□ -0.53
CCDC88C-206ENST00000553437 FGBP02675 491 aa11.74□□□□□ -0.53
CCDC88C-206ENST00000553437 IQCF3P0C7M6 154 aa11.74□□□□□ -0.53
CCDC88C-206ENST00000553437 ARP10275 920 aa11.74□□□□□ -0.53
CCDC88C-206ENST00000553437 ARHGAP4P98171 946 aa11.74□□□□□ -0.53
CCDC88C-206ENST00000553437 ZNF200P98182 395 aaPredicted RBP11.74□□□□□ -0.53
CCDC88C-206ENST00000553437 AKAP17AQ02040 695 aaKnown RBP11.74□□□□□ -0.53
CCDC88C-206ENST00000553437 RBL2Q08999 1139 aa11.74□□□□□ -0.53
CCDC88C-206ENST00000553437 STK3Q13188 491 aa11.74□□□□□ -0.53
CCDC88C-206ENST00000553437 GPNMBQ14956 572 aa11.74□□□□□ -0.53
CCDC88C-206ENST00000553437 TRIM71Q2Q1W2 868 aaKnown RBP11.74□□□□□ -0.53
CCDC88C-206ENST00000553437 CEP55Q53EZ4 464 aa11.74□□□□□ -0.53
CCDC88C-206ENST00000553437 PSRC1Q6PGN9 363 aaPredicted RBP11.74□□□□□ -0.53
CCDC88C-206ENST00000553437 DEFB123Q8N688 67 aa11.74□□□□□ -0.53
CCDC88C-206ENST00000553437 CCDC12Q8WUD4 166 aaPredicted RBP11.74□□□□□ -0.53
CCDC88C-206ENST00000553437 HERVK_113Q902F9 699 aa11.74□□□□□ -0.53
CCDC88C-206ENST00000553437 WNT8BQ93098 351 aa11.74□□□□□ -0.53
CCDC88C-206ENST00000553437 TUT1Q9H6E5 874 aaKnown RBP11.74□□□□□ -0.53
CCDC88C-206ENST00000553437 C6orf50Q9HD87 102 aa11.74□□□□□ -0.53
CCDC88C-206ENST00000553437 CXXC1Q9P0U4 656 aaPredicted RBP11.74□□□□□ -0.53
CCDC88C-206ENST00000553437 VPS54Q9P1Q0 977 aa11.74□□□□□ -0.53
CCDC88C-206ENST00000553437 MUC3AQ02505 3323 aa11.73□□□□□ -0.53
CCDC88C-206ENST00000553437 HSFX4A0A1B0GTS1 333 aaPredicted RBP11.73□□□□□ -0.53
CCDC88C-206ENST00000553437 HSFX3A0A1B0GWH4 333 aaPredicted RBP11.73□□□□□ -0.53
CCDC88C-206ENST00000553437 EDIL3O43854 480 aa11.73□□□□□ -0.53
CCDC88C-206ENST00000553437 CYP3A4P08684 503 aa11.73□□□□□ -0.53
CCDC88C-206ENST00000553437 SMIM10L2AP0DMW4 78 aa11.73□□□□□ -0.53
CCDC88C-206ENST00000553437 SMIM10L2BP0DMW5 78 aa11.73□□□□□ -0.53
CCDC88C-206ENST00000553437 GNA11P29992 359 aa11.73□□□□□ -0.53
CCDC88C-206ENST00000553437 AK2P54819 239 aa11.73□□□□□ -0.53
CCDC88C-206ENST00000553437 SP4Q02446 784 aa11.73□□□□□ -0.53
CCDC88C-206ENST00000553437 SSRP1Q08945 709 aaKnown RBP11.73□□□□□ -0.53
CCDC88C-206ENST00000553437 SCRN1Q12765 414 aa11.73□□□□□ -0.53
CCDC88C-206ENST00000553437 PTK7Q13308 1070 aa11.73□□□□□ -0.53
CCDC88C-206ENST00000553437 ITGB3BPQ13352 177 aaPredicted RBP11.73□□□□□ -0.53
CCDC88C-206ENST00000553437 BFSP2Q13515 415 aa11.73□□□□□ -0.53
CCDC88C-206ENST00000553437 KIAA1217Q5T5P2 1943 aa11.73□□□□□ -0.53
CCDC88C-206ENST00000553437 UTP14CQ5TAP6 766 aaKnown RBP11.73□□□□□ -0.53
CCDC88C-206ENST00000553437 TRAF7Q6Q0C0 670 aa11.73□□□□□ -0.53
CCDC88C-206ENST00000553437 NIPA1Q7RTP0 329 aa11.73□□□□□ -0.53
CCDC88C-206ENST00000553437 TRIM50Q86XT4 487 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms