RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 PCDHA11Q9Y5I1 949 aa6.72□□□□□ -1.33
SCFD1-209ENST00000553280 NPHS1O60500 1241 aa6.71□□□□□ -1.34
SCFD1-209ENST00000553280 LTKP29376 864 aa6.71□□□□□ -1.34
SCFD1-209ENST00000553280 RBM10P98175 930 aaKnown RBP6.71□□□□□ -1.34
SCFD1-209ENST00000553280 LAPTM5Q13571 262 aa6.71□□□□□ -1.34
SCFD1-209ENST00000553280 CRY1Q16526 586 aa6.71□□□□□ -1.34
SCFD1-209ENST00000553280 INAVAQ3KP66 663 aa6.71□□□□□ -1.34
SCFD1-209ENST00000553280 CCDC146Q8IYE0 955 aa6.71□□□□□ -1.34
SCFD1-209ENST00000553280 CBARPQ8N350 705 aaPredicted RBP6.71□□□□□ -1.34
SCFD1-209ENST00000553280 NAT16Q8N8M0 369 aa6.71□□□□□ -1.34
SCFD1-209ENST00000553280 DPF3Q92784 378 aa6.71□□□□□ -1.34
SCFD1-209ENST00000553280 CHAMP1Q96JM3 812 aa6.71□□□□□ -1.34
SCFD1-209ENST00000553280 OXSMQ9NWU1 459 aa6.71□□□□□ -1.34
SCFD1-209ENST00000553280 IQCJ-SCHIP1C9J366 451 aaPredicted RBP6.7□□□□□ -1.34
SCFD1-209ENST00000553280 H7BY64 318 aa6.7□□□□□ -1.34
SCFD1-209ENST00000553280 GLI1P08151 1106 aa6.7□□□□□ -1.34
SCFD1-209ENST00000553280 RPL10P27635 214 aaKnown RBP6.7□□□□□ -1.34
SCFD1-209ENST00000553280 HK2P52789 917 aa6.7□□□□□ -1.34
SCFD1-209ENST00000553280 SESN3P58005 492 aa6.7□□□□□ -1.34
SCFD1-209ENST00000553280 ERVFC1P60507 584 aa6.7□□□□□ -1.34
SCFD1-209ENST00000553280 ERVK-21P61565 698 aa6.7□□□□□ -1.34
SCFD1-209ENST00000553280 HLA-DQA1Q5Y7H0 255 aa6.7□□□□□ -1.34
SCFD1-209ENST00000553280 CREB3L3Q68CJ9 461 aa6.7□□□□□ -1.34
SCFD1-209ENST00000553280 MPZL3Q6UWV2 235 aa6.7□□□□□ -1.34
SCFD1-209ENST00000553280 ZPBP2Q6X784 338 aa6.7□□□□□ -1.34
SCFD1-209ENST00000553280 MYO1HQ8N1T3 1032 aa6.7□□□□□ -1.34
SCFD1-209ENST00000553280 KCNJ15Q99712 375 aa6.7□□□□□ -1.34
SCFD1-209ENST00000553280 POLR3GLQ9BT43 218 aa6.7□□□□□ -1.34
SCFD1-209ENST00000553280 VTA1Q9NP79 307 aa6.7□□□□□ -1.34
SCFD1-209ENST00000553280 ERVK13-1Q9NX77 482 aa6.7□□□□□ -1.34
SCFD1-209ENST00000553280 CLDND1Q9NY35 253 aa6.7□□□□□ -1.34
SCFD1-209ENST00000553280 FBXL7Q9UJT9 491 aa6.7□□□□□ -1.34
SCFD1-209ENST00000553280 WTIPA6NIX2 430 aaPredicted RBP6.69□□□□□ -1.34
SCFD1-209ENST00000553280 PDE6AP16499 860 aa6.69□□□□□ -1.34
SCFD1-209ENST00000553280 CEBPAP49715 358 aaPredicted RBP6.69□□□□□ -1.34
SCFD1-209ENST00000553280 EGR3Q06889 387 aa6.69□□□□□ -1.34
SCFD1-209ENST00000553280 FZD5Q13467 585 aa6.69□□□□□ -1.34
SCFD1-209ENST00000553280 RGL3Q3MIN7 710 aa6.69□□□□□ -1.34
SCFD1-209ENST00000553280 NXNQ6DKJ4 435 aa6.69□□□□□ -1.34
SCFD1-209ENST00000553280 PRR23BQ6ZRT6 265 aa6.69□□□□□ -1.34
SCFD1-209ENST00000553280 WAPLQ7Z5K2 1190 aa6.69□□□□□ -1.34
SCFD1-209ENST00000553280 OSTM1Q86WC4 334 aa6.69□□□□□ -1.34
SCFD1-209ENST00000553280 CISD2Q8N5K1 135 aaKnown RBP6.69□□□□□ -1.34
SCFD1-209ENST00000553280 EFHBQ8N7U6 833 aa6.69□□□□□ -1.34
SCFD1-209ENST00000553280 SLC5A5Q92911 643 aa6.69□□□□□ -1.34
SCFD1-209ENST00000553280 TMEM169Q96HH4 297 aa6.69□□□□□ -1.34
SCFD1-209ENST00000553280 AHCYL2Q96HN2 611 aaKnown RBP6.69□□□□□ -1.34
SCFD1-209ENST00000553280 FCRL2Q96LA5 508 aaPredicted RBP6.69□□□□□ -1.34
SCFD1-209ENST00000553280 JAM3Q9BX67 310 aa6.69□□□□□ -1.34
SCFD1-209ENST00000553280 RTFDC1Q9BY42 306 aaPredicted RBP6.69□□□□□ -1.34
SCFD1-209ENST00000553280 SLC13A1Q9BZW2 595 aa6.69□□□□□ -1.34
SCFD1-209ENST00000553280 ADAMTS10Q9H324 1103 aa6.69□□□□□ -1.34
SCFD1-209ENST00000553280 ZNF180Q9UJW8 692 aa6.69□□□□□ -1.34
SCFD1-209ENST00000553280 TMEM59LQ9UK28 342 aa6.69□□□□□ -1.34
SCFD1-209ENST00000553280 ZNF561-AS1K7EIQ3 104 aa6.68□□□□□ -1.34
SCFD1-209ENST00000553280 RFPL1O75677 317 aa6.68□□□□□ -1.34
SCFD1-209ENST00000553280 ABLIM3O94929 683 aa6.68□□□□□ -1.34
SCFD1-209ENST00000553280 ZSCAN20P17040 1043 aaPredicted RBP6.68□□□□□ -1.34
SCFD1-209ENST00000553280 GNALP38405 381 aa6.68□□□□□ -1.34
SCFD1-209ENST00000553280 JAG1P78504 1218 aa6.68□□□□□ -1.34
SCFD1-209ENST00000553280 KLF1Q13351 362 aaPredicted RBP6.68□□□□□ -1.34
SCFD1-209ENST00000553280 GPR19Q15760 415 aa6.68□□□□□ -1.34
SCFD1-209ENST00000553280 HABP4Q5JVS0 413 aaKnown RBP6.68□□□□□ -1.34
SCFD1-209ENST00000553280 FAM102BQ5T8I3 360 aa6.68□□□□□ -1.34
SCFD1-209ENST00000553280 CCSAPQ6IQ19 270 aaPredicted RBP6.68□□□□□ -1.34
SCFD1-209ENST00000553280 CEP68Q76N32 757 aa6.68□□□□□ -1.34
SCFD1-209ENST00000553280 C14orf80Q86SX3 495 aa6.68□□□□□ -1.34
SCFD1-209ENST00000553280 NLRP10Q86W26 655 aa6.68□□□□□ -1.34
SCFD1-209ENST00000553280 TCEAL8Q8IYN2 117 aa6.68□□□□□ -1.34
SCFD1-209ENST00000553280 Q8N1Y9 231 aa6.68□□□□□ -1.34
SCFD1-209ENST00000553280 CLRN3Q8NCR9 226 aa6.68□□□□□ -1.34
SCFD1-209ENST00000553280 NLGN2Q8NFZ4 835 aa6.68□□□□□ -1.34
SCFD1-209ENST00000553280 TTC8Q8TAM2 541 aa6.68□□□□□ -1.34
SCFD1-209ENST00000553280 CCDC120Q96HB5 630 aa6.68□□□□□ -1.34
SCFD1-209ENST00000553280 FUBP3Q96I24 572 aaKnown RBP eCLIP6.68□□□□□ -1.34
SCFD1-209ENST00000553280 BOCQ9BWV1 1114 aa6.68□□□□□ -1.34
SCFD1-209ENST00000553280 H2AFY2Q9P0M6 372 aaPredicted RBP6.68□□□□□ -1.34
SCFD1-209ENST00000553280 SLC12A8A0AV02 714 aa6.67□□□□□ -1.34
SCFD1-209ENST00000553280 TGM5O43548 720 aa6.67□□□□□ -1.34
SCFD1-209ENST00000553280 PPP1R11O60927 126 aaPredicted RBP6.67□□□□□ -1.34
SCFD1-209ENST00000553280 AMY2AP04746 511 aa6.67□□□□□ -1.34
SCFD1-209ENST00000553280 ZBTB48P10074 688 aaPredicted RBP6.67□□□□□ -1.34
SCFD1-209ENST00000553280 AMY2BP19961 511 aa6.67□□□□□ -1.34
SCFD1-209ENST00000553280 JAM2P57087 298 aa6.67□□□□□ -1.34
SCFD1-209ENST00000553280 MESP2Q0VG99 397 aa6.67□□□□□ -1.34
SCFD1-209ENST00000553280 HLTFQ14527 1009 aaKnown RBP eCLIP6.67□□□□□ -1.34
SCFD1-209ENST00000553280 PKN1Q16512 942 aa6.67□□□□□ -1.34
SCFD1-209ENST00000553280 DDB1Q16531 1140 aa6.67□□□□□ -1.34
SCFD1-209ENST00000553280 PTPN21Q16825 1174 aa6.67□□□□□ -1.34
SCFD1-209ENST00000553280 BROXQ5VW32 411 aa6.67□□□□□ -1.34
SCFD1-209ENST00000553280 HHIPL2Q6UWX4 724 aa6.67□□□□□ -1.34
SCFD1-209ENST00000553280 HDGFL2Q7Z4V5 671 aaPredicted RBP6.67□□□□□ -1.34
SCFD1-209ENST00000553280 ABHD4Q8TB40 342 aa6.67□□□□□ -1.34
SCFD1-209ENST00000553280 DIRC2Q96SL1 478 aa6.67□□□□□ -1.34
SCFD1-209ENST00000553280 SLC38A3Q99624 504 aa6.67□□□□□ -1.34
SCFD1-209ENST00000553280 SMURF1Q9HCE7 757 aa6.67□□□□□ -1.34
SCFD1-209ENST00000553280 TCF7L1Q9HCS4 588 aa6.67□□□□□ -1.34
SCFD1-209ENST00000553280 FAM53CQ9NYF3 392 aa6.67□□□□□ -1.34
SCFD1-209ENST00000553280 TNFRSF10DQ9UBN6 386 aa6.67□□□□□ -1.34
SCFD1-209ENST00000553280 SPO11Q9Y5K1 396 aa6.67□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms