RNA–Protein interactions for RNA: ENST00000552440.5

USP44-208, Transcript of ubiquitin specific peptidase 44, human

TSL 5 BASIC

Gene USP44, Length 1,818 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP44-208	ENST00000552440	DACT2	Q5SW24	774 aa		5.05	□□□□□ -1.6
USP44-208	ENST00000552440	KIAA1211L	Q6NV74	962 aa		5.05	□□□□□ -1.6
USP44-208	ENST00000552440	MZT2A	Q6P582	158 aa		5.05	□□□□□ -1.6
USP44-208	ENST00000552440	C1orf228	Q6PIY5	440 aa		5.05	□□□□□ -1.6
USP44-208	ENST00000552440	RASSF3	Q86WH2	238 aa		5.05	□□□□□ -1.6
USP44-208	ENST00000552440	C1QL4	Q86Z23	238 aa		5.05	□□□□□ -1.6
USP44-208	ENST00000552440	IRF2BP1	Q8IU81	584 aa		5.05	□□□□□ -1.6
USP44-208	ENST00000552440	TPH2	Q8IWU9	490 aa		5.05	□□□□□ -1.6
USP44-208	ENST00000552440	TRIM8	Q9BZR9	551 aa		5.05	□□□□□ -1.6
USP44-208	ENST00000552440	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	5.05	□□□□□ -1.6
USP44-208	ENST00000552440	PUS7L	Q9H0K6	701 aa	Known RBP	5.05	□□□□□ -1.6
USP44-208	ENST00000552440	NCOA5	Q9HCD5	579 aa	Known RBP	5.05	□□□□□ -1.6
USP44-208	ENST00000552440	LUC7L	Q9NQ29	371 aa	Known RBP	5.05	□□□□□ -1.6
USP44-208	ENST00000552440	TRHDE	Q9UKU6	1024 aa		5.05	□□□□□ -1.6
USP44-208	ENST00000552440	DIS3	Q9Y2L1	958 aa	Known RBP	5.05	□□□□□ -1.6
USP44-208	ENST00000552440	IQCA1L	A6NCM1	817 aa		5.04	□□□□□ -1.6
USP44-208	ENST00000552440	SNX2	O60749	519 aa		5.04	□□□□□ -1.6
USP44-208	ENST00000552440	PLCG1	P19174	1290 aa		5.04	□□□□□ -1.6
USP44-208	ENST00000552440	TNFAIP3	P21580	790 aa		5.04	□□□□□ -1.6
USP44-208	ENST00000552440	TPP2	P29144	1249 aa	Predicted RBP	5.04	□□□□□ -1.6
USP44-208	ENST00000552440	PDE1C	Q14123	709 aa	Predicted RBP	5.04	□□□□□ -1.6
USP44-208	ENST00000552440	GBX1	Q14549	363 aa		5.04	□□□□□ -1.6
USP44-208	ENST00000552440	MINDY4	Q4G0A6	757 aa		5.04	□□□□□ -1.6
USP44-208	ENST00000552440	FOXB2	Q5VYV0	432 aa		5.04	□□□□□ -1.6
USP44-208	ENST00000552440	CNNM4	Q6P4Q7	775 aa		5.04	□□□□□ -1.6
USP44-208	ENST00000552440	ATG14	Q6ZNE5	492 aa		5.04	□□□□□ -1.6
USP44-208	ENST00000552440	MAATS1	Q7Z4T9	603 aa		5.04	□□□□□ -1.6
USP44-208	ENST00000552440	IPO4	Q8TEX9	1081 aa	Known RBP	5.04	□□□□□ -1.6
USP44-208	ENST00000552440	PGBD4	Q96DM1	585 aa		5.04	□□□□□ -1.6
USP44-208	ENST00000552440	CD320	Q9NPF0	282 aa		5.04	□□□□□ -1.6
USP44-208	ENST00000552440	RIC8A	Q9NPQ8	531 aa		5.04	□□□□□ -1.6
USP44-208	ENST00000552440	IP6K2	Q9UHH9	426 aa		5.04	□□□□□ -1.6
USP44-208	ENST00000552440	PHTF1	Q9UMS5	762 aa		5.04	□□□□□ -1.6
USP44-208	ENST00000552440	FAM50B	Q9Y247	325 aa		5.04	□□□□□ -1.6
USP44-208	ENST00000552440	NPIPB6	E9PJ23	425 aa		5.04	□□□□□ -1.6
USP44-208	ENST00000552440	ESR1	P03372	595 aa		5.04	□□□□□ -1.6
USP44-208	ENST00000552440	HSP90AB1	P08238	724 aa	Known RBP	5.04	□□□□□ -1.6
USP44-208	ENST00000552440	FAM200B	P0CF97	657 aa		5.04	□□□□□ -1.6
USP44-208	ENST00000552440	HK2	P52789	917 aa		5.04	□□□□□ -1.6
USP44-208	ENST00000552440	EIF5	P55010	431 aa	Known RBP	5.04	□□□□□ -1.6
USP44-208	ENST00000552440	SLC7A5	Q01650	507 aa		5.04	□□□□□ -1.6
USP44-208	ENST00000552440	NUCB1	Q02818	461 aa		5.04	□□□□□ -1.6
USP44-208	ENST00000552440	DUSP4	Q13115	394 aa		5.04	□□□□□ -1.6
USP44-208	ENST00000552440	STAT4	Q14765	748 aa		5.04	□□□□□ -1.6
USP44-208	ENST00000552440	NR0B2	Q15466	257 aa		5.04	□□□□□ -1.6
USP44-208	ENST00000552440	FNDC3B	Q53EP0	1204 aa	Known RBP	5.04	□□□□□ -1.6
USP44-208	ENST00000552440	ARMC3	Q5W041	872 aa		5.04	□□□□□ -1.6
USP44-208	ENST00000552440	C16orf54	Q6UWD8	224 aa		5.04	□□□□□ -1.6
USP44-208	ENST00000552440	KIAA1958	Q8N8K9	716 aa		5.04	□□□□□ -1.6
USP44-208	ENST00000552440	XAGE3	Q8WTP9	111 aa		5.04	□□□□□ -1.6
USP44-208	ENST00000552440	LEO1	Q8WVC0	666 aa	Predicted RBP	5.04	□□□□□ -1.6
USP44-208	ENST00000552440	RSPH1	Q8WYR4	309 aa		5.04	□□□□□ -1.6
USP44-208	ENST00000552440	KISS1R	Q969F8	398 aa	Predicted RBP	5.04	□□□□□ -1.6
USP44-208	ENST00000552440	NLRC4	Q9NPP4	1024 aa		5.04	□□□□□ -1.6
USP44-208	ENST00000552440	SAGE1	Q9NXZ1	904 aa		5.04	□□□□□ -1.6
USP44-208	ENST00000552440	TJP2	Q9UDY2	1190 aa		5.04	□□□□□ -1.6
USP44-208	ENST00000552440	DUSP13	Q9UII6	198 aa		5.04	□□□□□ -1.6
USP44-208	ENST00000552440	ZNF214	Q9UL59	606 aa	Predicted RBP	5.04	□□□□□ -1.6
USP44-208	ENST00000552440	TNKS	O95271	1327 aa		5.04	□□□□□ -1.6
USP44-208	ENST00000552440	FAM86C2P	A6NEL3	165 aa		5.03	□□□□□ -1.6
USP44-208	ENST00000552440	PLD2	O14939	933 aa		5.03	□□□□□ -1.6
USP44-208	ENST00000552440	PEX10	O60683	326 aa		5.03	□□□□□ -1.6
USP44-208	ENST00000552440	SEMA7A	O75326	666 aa		5.03	□□□□□ -1.6
USP44-208	ENST00000552440	AGR2	O95994	175 aa		5.03	□□□□□ -1.6
USP44-208	ENST00000552440	L1CAM	P32004	1257 aa		5.03	□□□□□ -1.6
USP44-208	ENST00000552440	CCNF	P41002	786 aa		5.03	□□□□□ -1.6
USP44-208	ENST00000552440	GJA9	P57773	515 aa		5.03	□□□□□ -1.6
USP44-208	ENST00000552440	GAB4	Q2WGN9	574 aa		5.03	□□□□□ -1.6
USP44-208	ENST00000552440	SYDE2	Q5VT97	1194 aa		5.03	□□□□□ -1.6
USP44-208	ENST00000552440	TTLL10	Q6ZVT0	673 aa		5.03	□□□□□ -1.6
USP44-208	ENST00000552440	TSPYL5	Q86VY4	417 aa	Predicted RBP	5.03	□□□□□ -1.6
USP44-208	ENST00000552440	SPATS2	Q86XZ4	545 aa	Known RBP	5.03	□□□□□ -1.6
USP44-208	ENST00000552440	FTSJ3	Q8IY81	847 aa	Known RBP	5.03	□□□□□ -1.6
USP44-208	ENST00000552440	PPM1K	Q8N3J5	372 aa		5.03	□□□□□ -1.6
USP44-208	ENST00000552440	NKAP	Q8N5F7	415 aa	Known RBP	5.03	□□□□□ -1.6
USP44-208	ENST00000552440	CNTD1	Q8N815	330 aa		5.03	□□□□□ -1.6
USP44-208	ENST00000552440	CYB5D2	Q8WUJ1	264 aa		5.03	□□□□□ -1.6
USP44-208	ENST00000552440	CDK5RAP3	Q96JB5	506 aa		5.03	□□□□□ -1.6
USP44-208	ENST00000552440	EXOC2	Q96KP1	924 aa		5.03	□□□□□ -1.6
USP44-208	ENST00000552440	CLUHP3	Q96NS8	147 aa		5.03	□□□□□ -1.6
USP44-208	ENST00000552440	INTS7	Q9NVH2	962 aa	Known RBP	5.03	□□□□□ -1.6
USP44-208	ENST00000552440	KLHL11	Q9NVR0	708 aa		5.03	□□□□□ -1.6
USP44-208	ENST00000552440	DMTF1	Q9Y222	760 aa		5.03	□□□□□ -1.6
USP44-208	ENST00000552440	CNTNAP4	Q9C0A0	1308 aa		5.03	□□□□□ -1.6
USP44-208	ENST00000552440	SETD1B	Q9UPS6	1966 aa	Known RBP	5.02	□□□□□ -1.61
USP44-208	ENST00000552440	CHURC1-FNTB	B4DL54	471 aa		5.02	□□□□□ -1.61
USP44-208	ENST00000552440		C9IYK1	514 aa		5.02	□□□□□ -1.61
USP44-208	ENST00000552440	GOLIM4	O00461	696 aa		5.02	□□□□□ -1.61
USP44-208	ENST00000552440	BRINP1	O60477	761 aa		5.02	□□□□□ -1.61
USP44-208	ENST00000552440	CCT5	P48643	541 aa		5.02	□□□□□ -1.61
USP44-208	ENST00000552440	GTF2A2	P52657	109 aa		5.02	□□□□□ -1.61
USP44-208	ENST00000552440	GRM3	Q14832	879 aa		5.02	□□□□□ -1.61
USP44-208	ENST00000552440	ELF2	Q15723	593 aa		5.02	□□□□□ -1.61
USP44-208	ENST00000552440	GNPTAB	Q3T906	1256 aa		5.02	□□□□□ -1.61
USP44-208	ENST00000552440	WDR45B	Q5MNZ6	344 aa		5.02	□□□□□ -1.61
USP44-208	ENST00000552440	TSHZ3	Q63HK5	1081 aa		5.02	□□□□□ -1.61
USP44-208	ENST00000552440	LCNL1	Q6ZST4	164 aa		5.02	□□□□□ -1.61
USP44-208	ENST00000552440	DNAJB8	Q8NHS0	232 aa		5.02	□□□□□ -1.61
USP44-208	ENST00000552440	RNF141	Q8WVD5	230 aa		5.02	□□□□□ -1.61
USP44-208	ENST00000552440	TTC17	Q96AE7	1141 aa		5.02	□□□□□ -1.61

Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms