RNA–Protein interactions for RNA: ENST00000548421.2

BRF1-213, Transcript of BRF1, RNA polymerase III transcription initiation factor subunit, human

TSL 1 (best) BASIC

Gene BRF1, Length 1,452 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BRF1-213	ENST00000548421	ERO1A	Q96HE7	468 aa		32.41	■■■□□ 2.78
BRF1-213	ENST00000548421	PP2D1	A8MPX8	630 aa		32.4	■■■□□ 2.78
BRF1-213	ENST00000548421	DHX15	O43143	795 aa	Known RBP	32.4	■■■□□ 2.78
BRF1-213	ENST00000548421	TGFB3	P10600	412 aa		32.4	■■■□□ 2.78
BRF1-213	ENST00000548421	XRCC5	P13010	732 aa	Known RBP	32.4	■■■□□ 2.78
BRF1-213	ENST00000548421	UBA7	P41226	1012 aa		32.4	■■■□□ 2.78
BRF1-213	ENST00000548421	FAM160A1	Q05DH4	1040 aa		32.4	■■■□□ 2.78
BRF1-213	ENST00000548421	DNAJC5G	Q8N7S2	189 aa		32.4	■■■□□ 2.78
BRF1-213	ENST00000548421	SDF4	Q9BRK5	362 aa		32.4	■■■□□ 2.78
BRF1-213	ENST00000548421	NFASC	O94856	1347 aa		32.39	■■■□□ 2.78
BRF1-213	ENST00000548421	SNAI1	O95863	264 aa	Predicted RBP	32.39	■■■□□ 2.78
BRF1-213	ENST00000548421	CDC25A	P30304	524 aa		32.39	■■■□□ 2.78
BRF1-213	ENST00000548421	CAP1	Q01518	475 aa		32.39	■■■□□ 2.78
BRF1-213	ENST00000548421	SENP7	Q9BQF6	1050 aa		32.39	■■■□□ 2.78
BRF1-213	ENST00000548421	CCSER1	Q9C0I3	900 aa		32.39	■■■□□ 2.78
BRF1-213	ENST00000548421	KCNH3	Q9ULD8	1083 aa		32.39	■■■□□ 2.78
BRF1-213	ENST00000548421	GABRQ	Q9UN88	632 aa		32.39	■■■□□ 2.78
BRF1-213	ENST00000548421	FLT3LG	P49771	235 aa		32.38	■■■□□ 2.77
BRF1-213	ENST00000548421	PRKCZ	Q05513	592 aa		32.38	■■■□□ 2.77
BRF1-213	ENST00000548421	NCAPH2	Q6IBW4	605 aa		32.38	■■■□□ 2.77
BRF1-213	ENST00000548421	ZNF296	Q8WUU4	475 aa	Predicted RBP	32.38	■■■□□ 2.77
BRF1-213	ENST00000548421	WBP1L	Q9NX94	342 aa		32.38	■■■□□ 2.77
BRF1-213	ENST00000548421	FLRT1	Q9NZU1	646 aa		32.38	■■■□□ 2.77
BRF1-213	ENST00000548421	TCEAL9	Q9UHQ7	104 aa		32.38	■■■□□ 2.77
BRF1-213	ENST00000548421	NR1I2	O75469	434 aa		32.37	■■■□□ 2.77
BRF1-213	ENST00000548421	GNRH1	P01148	92 aa		32.37	■■■□□ 2.77
BRF1-213	ENST00000548421	HOXD10	P28358	340 aa		32.37	■■■□□ 2.77
BRF1-213	ENST00000548421	SYK	P43405	635 aa		32.37	■■■□□ 2.77
BRF1-213	ENST00000548421	CCL14	Q16627	93 aa		32.37	■■■□□ 2.77
BRF1-213	ENST00000548421	B3GNT9	Q6UX72	402 aa		32.37	■■■□□ 2.77
BRF1-213	ENST00000548421	FMR1NB	Q8N0W7	255 aa	Predicted RBP	32.37	■■■□□ 2.77
BRF1-213	ENST00000548421	ENGASE	Q8NFI3	743 aa		32.37	■■■□□ 2.77
BRF1-213	ENST00000548421	KATNBL1	Q9H079	304 aa		32.37	■■■□□ 2.77
BRF1-213	ENST00000548421	UNC45A	Q9H3U1	944 aa		32.37	■■■□□ 2.77
BRF1-213	ENST00000548421	ABHD16B	Q9H3Z7	469 aa		32.37	■■■□□ 2.77
BRF1-213	ENST00000548421	STK24	Q9Y6E0	443 aa		32.37	■■■□□ 2.77
BRF1-213	ENST00000548421	DDX39A	O00148	427 aa	Known RBP	32.36	■■■□□ 2.77
BRF1-213	ENST00000548421	SNW1	Q13573	536 aa	Known RBP	32.36	■■■□□ 2.77
BRF1-213	ENST00000548421	KRT79	Q5XKE5	535 aa		32.36	■■■□□ 2.77
BRF1-213	ENST00000548421	CABP7	Q86V35	215 aa		32.36	■■■□□ 2.77
BRF1-213	ENST00000548421	GIMAP8	Q8ND71	665 aa	Predicted RBP	32.36	■■■□□ 2.77
BRF1-213	ENST00000548421	SCFD2	Q8WU76	684 aa		32.36	■■■□□ 2.77
BRF1-213	ENST00000548421	CHMP2A	O43633	222 aa		32.35	■■■□□ 2.77
BRF1-213	ENST00000548421	UBA1	P22314	1058 aa	Known RBP	32.35	■■■□□ 2.77
BRF1-213	ENST00000548421	SP2	Q02086	613 aa		32.35	■■■□□ 2.77
BRF1-213	ENST00000548421	ARHGEF6	Q15052	776 aa		32.35	■■■□□ 2.77
BRF1-213	ENST00000548421	ERMN	Q8TAM6	284 aa		32.35	■■■□□ 2.77
BRF1-213	ENST00000548421	MMTAG2	Q9BU76	263 aa	Known RBP	32.35	■■■□□ 2.77
BRF1-213	ENST00000548421	DACT1	Q9NYF0	836 aa		32.35	■■■□□ 2.77
BRF1-213	ENST00000548421	SRRD	Q9UH36	339 aa		32.35	■■■□□ 2.77
BRF1-213	ENST00000548421	KRT76	Q01546	638 aa		32.35	■■■□□ 2.77
BRF1-213	ENST00000548421	IRF5	Q13568	498 aa		32.35	■■■□□ 2.77
BRF1-213	ENST00000548421	NEDD9	Q14511	834 aa		32.35	■■■□□ 2.77
BRF1-213	ENST00000548421	TTLL4	Q14679	1199 aa		32.35	■■■□□ 2.77
BRF1-213	ENST00000548421	TAPT1	Q6NXT6	567 aa		32.35	■■■□□ 2.77
BRF1-213	ENST00000548421	SNX29	Q8TEQ0	813 aa		32.35	■■■□□ 2.77
BRF1-213	ENST00000548421	JPH1	Q9HDC5	661 aa	Predicted RBP	32.35	■■■□□ 2.77
BRF1-213	ENST00000548421	CCDC39	Q9UFE4	941 aa		32.35	■■■□□ 2.77
BRF1-213	ENST00000548421	DDX41	Q9UJV9	622 aa	Known RBP	32.35	■■■□□ 2.77
BRF1-213	ENST00000548421	RBM47	A0AV96	593 aa	Known RBP	32.34	■■■□□ 2.77
BRF1-213	ENST00000548421	IGHA2	P01877	340 aa		32.34	■■■□□ 2.77
BRF1-213	ENST00000548421	ACVR2B	Q13705	512 aa		32.34	■■■□□ 2.77
BRF1-213	ENST00000548421	HAUS3	Q68CZ6	603 aa		32.34	■■■□□ 2.77
BRF1-213	ENST00000548421	RASSF8	Q8NHQ8	419 aa		32.34	■■■□□ 2.77
BRF1-213	ENST00000548421	PYM1	Q9BRP8	204 aa	Known RBP	32.34	■■■□□ 2.77
BRF1-213	ENST00000548421	PDGFC	Q9NRA1	345 aa		32.34	■■■□□ 2.77
BRF1-213	ENST00000548421	TSKS	Q9UJT2	592 aa		32.34	■■■□□ 2.77
BRF1-213	ENST00000548421	EML1	O00423	815 aa		32.33	■■■□□ 2.77
BRF1-213	ENST00000548421	POLR2D	O15514	142 aa	Known RBP	32.33	■■■□□ 2.77
BRF1-213	ENST00000548421	SLC26A4	O43511	780 aa		32.33	■■■□□ 2.77
BRF1-213	ENST00000548421	ZNF202	O95125	648 aa		32.33	■■■□□ 2.77
BRF1-213	ENST00000548421	ARIH2	O95376	493 aa		32.33	■■■□□ 2.77
BRF1-213	ENST00000548421	KARS	Q15046	597 aa	Known RBP	32.33	■■■□□ 2.77
BRF1-213	ENST00000548421	ZNF746	Q6NUN9	644 aa	Predicted RBP	32.33	■■■□□ 2.77
BRF1-213	ENST00000548421	CCDC62	Q6P9F0	684 aa		32.33	■■■□□ 2.77
BRF1-213	ENST00000548421	PDILT	Q8N807	584 aa		32.33	■■■□□ 2.77
BRF1-213	ENST00000548421	CALML4	Q96GE6	196 aa		32.33	■■■□□ 2.77
BRF1-213	ENST00000548421	DDX19A	Q9NUU7	478 aa	Known RBP	32.33	■■■□□ 2.77
BRF1-213	ENST00000548421	KIN	O60870	393 aa	Known RBP	32.32	■■■□□ 2.76
BRF1-213	ENST00000548421	LY6K	Q17RY6	165 aa		32.32	■■■□□ 2.76
BRF1-213	ENST00000548421	TRMT44	Q8IYL2	757 aa	Known RBP	32.32	■■■□□ 2.76
BRF1-213	ENST00000548421	PANK2	Q9BZ23	570 aa		32.32	■■■□□ 2.76
BRF1-213	ENST00000548421	DISC1	Q9NRI5	854 aa		32.32	■■■□□ 2.76
BRF1-213	ENST00000548421	SLC9A2	Q9UBY0	812 aa		32.32	■■■□□ 2.76
BRF1-213	ENST00000548421	ZHX1	Q9UKY1	873 aa	Predicted RBP	32.32	■■■□□ 2.76
BRF1-213	ENST00000548421	KDM3A	Q9Y4C1	1321 aa		32.31	■■■□□ 2.76
BRF1-213	ENST00000548421		A0A087X0B3	334 aa		32.31	■■■□□ 2.76
BRF1-213	ENST00000548421	TXN	P10599	105 aa	Known RBP	32.31	■■■□□ 2.76
BRF1-213	ENST00000548421	SFN	P31947	248 aa		32.31	■■■□□ 2.76
BRF1-213	ENST00000548421	CYP2C19	P33261	490 aa		32.31	■■■□□ 2.76
BRF1-213	ENST00000548421	JAK3	P52333	1124 aa		32.31	■■■□□ 2.76
BRF1-213	ENST00000548421	CYFIP1	Q7L576	1253 aa		32.31	■■■□□ 2.76
BRF1-213	ENST00000548421	MIER3	Q7Z3K6	550 aa		32.31	■■■□□ 2.76
BRF1-213	ENST00000548421	CCT6A	P40227	531 aa	Known RBP	32.3	■■■□□ 2.76
BRF1-213	ENST00000548421	EPHA7	Q15375	998 aa		32.3	■■■□□ 2.76
BRF1-213	ENST00000548421	ZRSR1	Q15695	479 aa	Known RBP	32.3	■■■□□ 2.76
BRF1-213	ENST00000548421	SMAP1	Q8IYB5	467 aa	Predicted RBP	32.3	■■■□□ 2.76
BRF1-213	ENST00000548421	CDK5RAP3	Q96JB5	506 aa		32.3	■■■□□ 2.76
BRF1-213	ENST00000548421	EIF2AK1	Q9BQI3	630 aa	Known RBP	32.3	■■■□□ 2.76
BRF1-213	ENST00000548421	WDR81	Q562E7	1941 aa		32.3	■■■□□ 2.76

Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms