RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 HGSNATQ68CP4 663 aa16.61■□□□□ 0.25
USP28-214ENST00000545540 BARGINQ6ZT62 677 aa16.61■□□□□ 0.25
USP28-214ENST00000545540 KSR1Q8IVT5 923 aa16.61■□□□□ 0.25
USP28-214ENST00000545540 CYP2W1Q8TAV3 490 aa16.61■□□□□ 0.25
USP28-214ENST00000545540 PURBQ96QR8 312 aaKnown RBP16.61■□□□□ 0.25
USP28-214ENST00000545540 KRT12Q99456 494 aa16.61■□□□□ 0.25
USP28-214ENST00000545540 ACBD3Q9H3P7 528 aa16.61■□□□□ 0.25
USP28-214ENST00000545540 SERPINB2P05120 415 aa16.61■□□□□ 0.25
USP28-214ENST00000545540 EPS15P42566 896 aa16.61■□□□□ 0.25
USP28-214ENST00000545540 MUM1L1Q5H9M0 696 aa16.61■□□□□ 0.25
USP28-214ENST00000545540 DCAF17Q5H9S7 520 aaPredicted RBP16.61■□□□□ 0.25
USP28-214ENST00000545540 PDXDC1Q6P996 788 aa16.61■□□□□ 0.25
USP28-214ENST00000545540 EPB41L5Q9HCM4 733 aa16.61■□□□□ 0.25
USP28-214ENST00000545540 CLIC2O15247 247 aa16.6■□□□□ 0.25
USP28-214ENST00000545540 HOXA13P31271 388 aaPredicted RBP16.6■□□□□ 0.25
USP28-214ENST00000545540 CCT5P48643 541 aa16.6■□□□□ 0.25
USP28-214ENST00000545540 PRR16Q569H4 304 aa16.6■□□□□ 0.25
USP28-214ENST00000545540 HAUS3Q68CZ6 603 aa16.6■□□□□ 0.25
USP28-214ENST00000545540 GUF1Q8N442 669 aaKnown RBP16.6■□□□□ 0.25
USP28-214ENST00000545540 CWC15Q9P013 229 aaKnown RBP16.6■□□□□ 0.25
USP28-214ENST00000545540 RSPH10B2B2RC85 870 aa16.6■□□□□ 0.25
USP28-214ENST00000545540 ZEB2O60315 1214 aa16.6■□□□□ 0.25
USP28-214ENST00000545540 RSPH10BP0C881 870 aa16.6■□□□□ 0.25
USP28-214ENST00000545540 RBM5P52756 815 aaKnown RBP eCLIP16.6■□□□□ 0.25
USP28-214ENST00000545540 C8orf74Q6P047 294 aa16.6■□□□□ 0.25
USP28-214ENST00000545540 P2RX7Q99572 595 aaKnown RBP16.6■□□□□ 0.25
USP28-214ENST00000545540 TSG101Q99816 390 aa16.6■□□□□ 0.25
USP28-214ENST00000545540 UTP18Q9Y5J1 556 aaKnown RBP eCLIP16.6■□□□□ 0.25
USP28-214ENST00000545540 COL4A3BPQ9Y5P4 624 aa16.6■□□□□ 0.25
USP28-214ENST00000545540 TMCO5BA8MYB1 307 aa16.6■□□□□ 0.25
USP28-214ENST00000545540 MED24O75448 989 aa16.6■□□□□ 0.25
USP28-214ENST00000545540 SF3A3Q12874 501 aaKnown RBP eCLIP16.6■□□□□ 0.25
USP28-214ENST00000545540 ADAM9Q13443 819 aa16.6■□□□□ 0.25
USP28-214ENST00000545540 SPICE1Q8N0Z3 855 aa16.6■□□□□ 0.25
USP28-214ENST00000545540 ALS2CR12Q96Q35 445 aa16.6■□□□□ 0.25
USP28-214ENST00000545540 MED4Q9NPJ6 270 aa16.6■□□□□ 0.25
USP28-214ENST00000545540 CASZ1Q86V15 1759 aa16.59■□□□□ 0.25
USP28-214ENST00000545540 ZBTB39O15060 712 aa16.59■□□□□ 0.25
USP28-214ENST00000545540 PLA2G4BP0C869 781 aa16.59■□□□□ 0.25
USP28-214ENST00000545540 NOP2P46087 812 aaKnown RBP16.59■□□□□ 0.25
USP28-214ENST00000545540 UBXN2AP68543 259 aa16.59■□□□□ 0.25
USP28-214ENST00000545540 SFMBT2Q5VUG0 894 aa16.59■□□□□ 0.25
USP28-214ENST00000545540 DDX42Q86XP3 938 aaKnown RBP eCLIP16.59■□□□□ 0.25
USP28-214ENST00000545540 PSD3Q9NYI0 1048 aa16.59■□□□□ 0.25
USP28-214ENST00000545540 PAFAH1B1P43034 410 aa16.59■□□□□ 0.25
USP28-214ENST00000545540 CCDC84Q86UT8 332 aaPredicted RBP16.59■□□□□ 0.25
USP28-214ENST00000545540 AP1M1Q9BXS5 423 aa16.59■□□□□ 0.25
USP28-214ENST00000545540 FAM107BQ9H098 131 aa16.59■□□□□ 0.25
USP28-214ENST00000545540 PCDHA1Q9Y5I3 950 aa16.59■□□□□ 0.25
USP28-214ENST00000545540 GDF11O95390 407 aa16.58■□□□□ 0.25
USP28-214ENST00000545540 POLD1P28340 1107 aa16.58■□□□□ 0.25
USP28-214ENST00000545540 FKBP3Q00688 224 aaKnown RBP16.58■□□□□ 0.25
USP28-214ENST00000545540 ZNF543Q08ER8 600 aa16.58■□□□□ 0.25
USP28-214ENST00000545540 ADAT2Q7Z6V5 191 aaKnown RBP16.58■□□□□ 0.25
USP28-214ENST00000545540 KIAA0825Q8IV33 1275 aa16.58■□□□□ 0.25
USP28-214ENST00000545540 SCFD1Q8WVM8 642 aa16.58■□□□□ 0.25
USP28-214ENST00000545540 SERPINB13Q9UIV8 391 aa16.58■□□□□ 0.25
USP28-214ENST00000545540 ROBO3Q96MS0 1386 aa16.58■□□□□ 0.25
USP28-214ENST00000545540 FXR2P51116 673 aaKnown RBP eCLIP16.58■□□□□ 0.24
USP28-214ENST00000545540 CCDC70Q6NSX1 233 aa16.58■□□□□ 0.24
USP28-214ENST00000545540 FAM76AQ8TAV0 307 aa16.58■□□□□ 0.24
USP28-214ENST00000545540 NOX5Q96PH1 765 aa16.58■□□□□ 0.24
USP28-214ENST00000545540 RAB34Q9BZG1 259 aa16.58■□□□□ 0.24
USP28-214ENST00000545540 RASSF4Q9H2L5 321 aa16.58■□□□□ 0.24
USP28-214ENST00000545540 DBNDD1Q9H9R9 158 aa16.58■□□□□ 0.24
USP28-214ENST00000545540 FAM184BQ9ULE4 1060 aa16.58■□□□□ 0.24
USP28-214ENST00000545540 ANO9A1A5B4 782 aa16.58■□□□□ 0.24
USP28-214ENST00000545540 KLHL30Q0D2K2 578 aa16.58■□□□□ 0.24
USP28-214ENST00000545540 PDCLQ13371 301 aa16.58■□□□□ 0.24
USP28-214ENST00000545540 AENQ8WTP8 325 aaKnown RBP16.58■□□□□ 0.24
USP28-214ENST00000545540 EMILIN3Q9NT22 766 aa16.58■□□□□ 0.24
USP28-214ENST00000545540 G3V3G9 751 aa16.57■□□□□ 0.24
USP28-214ENST00000545540 HEXIM1O94992 359 aaKnown RBP16.57■□□□□ 0.24
USP28-214ENST00000545540 TTLL1O95922 423 aa16.57■□□□□ 0.24
USP28-214ENST00000545540 SLC9C1Q4G0N8 1177 aa16.57■□□□□ 0.24
USP28-214ENST00000545540 DCAF8Q5TAQ9 597 aa16.57■□□□□ 0.24
USP28-214ENST00000545540 CUL5Q93034 780 aa16.57■□□□□ 0.24
USP28-214ENST00000545540 CCDC43Q96MW1 224 aaKnown RBP16.57■□□□□ 0.24
USP28-214ENST00000545540 DLEC1Q9Y238 1755 aa16.57■□□□□ 0.24
USP28-214ENST00000545540 PNMA6FA0A0J9YX94 578 aa16.57■□□□□ 0.24
USP28-214ENST00000545540 PVALEFA0A1B0GWK0 134 aa16.57■□□□□ 0.24
USP28-214ENST00000545540 A0A1W2PQJ5 194 aa16.57■□□□□ 0.24
USP28-214ENST00000545540 CHMP2AO43633 222 aa16.57■□□□□ 0.24
USP28-214ENST00000545540 NR2F2P24468 414 aa16.57■□□□□ 0.24
USP28-214ENST00000545540 CASP4P49662 377 aa16.57■□□□□ 0.24
USP28-214ENST00000545540 QRICH1Q2TAL8 776 aa16.57■□□□□ 0.24
USP28-214ENST00000545540 OR2W6PQ8NHA6 318 aa16.57■□□□□ 0.24
USP28-214ENST00000545540 TSGA10Q9BZW7 698 aa16.57■□□□□ 0.24
USP28-214ENST00000545540 STIM2Q9P246 746 aa16.57■□□□□ 0.24
USP28-214ENST00000545540 STK17AQ9UEE5 414 aa16.57■□□□□ 0.24
USP28-214ENST00000545540 LAMB2P55268 1798 aa16.57■□□□□ 0.24
USP28-214ENST00000545540 GNGT1P63211 74 aa16.57■□□□□ 0.24
USP28-214ENST00000545540 KCNH2Q12809 1159 aa16.57■□□□□ 0.24
USP28-214ENST00000545540 PLS1Q14651 629 aa16.57■□□□□ 0.24
USP28-214ENST00000545540 ARSHQ5FYA8 562 aa16.57■□□□□ 0.24
USP28-214ENST00000545540 PIGOQ8TEQ8 1089 aa16.57■□□□□ 0.24
USP28-214ENST00000545540 MAGEF1Q9HAY2 307 aa16.57■□□□□ 0.24
USP28-214ENST00000545540 BMP2KQ9NSY1 1161 aaPredicted RBP16.57■□□□□ 0.24
USP28-214ENST00000545540 RGL1Q9NZL6 768 aa16.57■□□□□ 0.24
USP28-214ENST00000545540 PCDHB13Q9Y5F0 798 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms