RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 MYOZ2Q9NPC6 264 aa18.12■□□□□ 0.49
COL4A1-204ENST00000543140 FGFR1OPO95684 399 aaKnown RBP18.12■□□□□ 0.49
COL4A1-204ENST00000543140 FBXO38Q6PIJ6 1188 aa18.12■□□□□ 0.49
COL4A1-204ENST00000543140 ERGIC2Q96RQ1 377 aa18.12■□□□□ 0.49
COL4A1-204ENST00000543140 NUP58Q9BVL2 599 aa18.12■□□□□ 0.49
COL4A1-204ENST00000543140 FAM207AQ9NSI2 230 aaPredicted RBP18.12■□□□□ 0.49
COL4A1-204ENST00000543140 TFR2Q9UP52 801 aa18.12■□□□□ 0.49
COL4A1-204ENST00000543140 REXO2Q9Y3B8 237 aaKnown RBP18.12■□□□□ 0.49
COL4A1-204ENST00000543140 PCDHA2Q9Y5H9 948 aa18.12■□□□□ 0.49
COL4A1-204ENST00000543140 SPDYE4A6NLX3 237 aa18.11■□□□□ 0.49
COL4A1-204ENST00000543140 GCOM1H8Y6P7 765 aaPredicted RBP18.11■□□□□ 0.49
COL4A1-204ENST00000543140 EML1O00423 815 aa18.11■□□□□ 0.49
COL4A1-204ENST00000543140 TBC1D12O60347 775 aa18.11■□□□□ 0.49
COL4A1-204ENST00000543140 POLR2MP0CAP2 368 aa18.11■□□□□ 0.49
COL4A1-204ENST00000543140 RPA1P27694 616 aa18.11■□□□□ 0.49
COL4A1-204ENST00000543140 CIAPIN1Q6FI81 312 aa18.11■□□□□ 0.49
COL4A1-204ENST00000543140 MTMR14Q8NCE2 650 aa18.11■□□□□ 0.49
COL4A1-204ENST00000543140 SLC16A10Q8TF71 515 aa18.11■□□□□ 0.49
COL4A1-204ENST00000543140 JDP2Q8WYK2 163 aa18.11■□□□□ 0.49
COL4A1-204ENST00000543140 RANBP17Q9H2T7 1088 aaKnown RBP18.11■□□□□ 0.49
COL4A1-204ENST00000543140 RGL1Q9NZL6 768 aa18.11■□□□□ 0.49
COL4A1-204ENST00000543140 TRIM10Q9UDY6 481 aa18.11■□□□□ 0.49
COL4A1-204ENST00000543140 VAV3Q9UKW4 847 aa18.11■□□□□ 0.49
COL4A1-204ENST00000543140 DNM3Q9UQ16 869 aa18.11■□□□□ 0.49
COL4A1-204ENST00000543140 MRFAP1Q9Y605 127 aa18.11■□□□□ 0.49
COL4A1-204ENST00000543140 IGLV3-22A0A075B6J6 115 aa18.11■□□□□ 0.49
COL4A1-204ENST00000543140 EPHB6O15197 1021 aa18.11■□□□□ 0.49
COL4A1-204ENST00000543140 ARHGAP25P42331 645 aa18.11■□□□□ 0.49
COL4A1-204ENST00000543140 MAN2A1Q16706 1144 aa18.11■□□□□ 0.49
COL4A1-204ENST00000543140 GPIHBP1Q8IV16 184 aa18.11■□□□□ 0.49
COL4A1-204ENST00000543140 CCDC155Q8N6L0 562 aa18.11■□□□□ 0.49
COL4A1-204ENST00000543140 UBXN4Q92575 508 aa18.11■□□□□ 0.49
COL4A1-204ENST00000543140 FEZ1Q99689 392 aa18.11■□□□□ 0.49
COL4A1-204ENST00000543140 WDR18Q9BV38 432 aa18.11■□□□□ 0.49
COL4A1-204ENST00000543140 ZNF341Q9BYN7 854 aa18.11■□□□□ 0.49
COL4A1-204ENST00000543140 PGAP2Q9UHJ9 254 aa18.11■□□□□ 0.49
COL4A1-204ENST00000543140 CHMP2AO43633 222 aa18.1■□□□□ 0.49
COL4A1-204ENST00000543140 CYP3A4P08684 503 aa18.1■□□□□ 0.49
COL4A1-204ENST00000543140 ZBED6P86452 979 aa18.1■□□□□ 0.49
COL4A1-204ENST00000543140 RASA3Q14644 834 aa18.1■□□□□ 0.49
COL4A1-204ENST00000543140 ZCWPW2Q504Y3 356 aa18.1■□□□□ 0.49
COL4A1-204ENST00000543140 SLC35F6Q8N357 371 aa18.1■□□□□ 0.49
COL4A1-204ENST00000543140 RETREG2Q8NC44 543 aa18.1■□□□□ 0.49
COL4A1-204ENST00000543140 TANGO6Q9C0B7 1094 aa18.1■□□□□ 0.49
COL4A1-204ENST00000543140 VPS33BQ9H267 617 aa18.1■□□□□ 0.49
COL4A1-204ENST00000543140 MMRN2Q9H8L6 949 aa18.1■□□□□ 0.49
COL4A1-204ENST00000543140 KIF13BQ9NQT8 1826 aa18.1■□□□□ 0.49
COL4A1-204ENST00000543140 FKBP3Q00688 224 aaKnown RBP18.1■□□□□ 0.49
COL4A1-204ENST00000543140 DALRD3Q5D0E6 543 aaKnown RBP18.1■□□□□ 0.49
COL4A1-204ENST00000543140 ZNF397Q8NF99 534 aaPredicted RBP18.1■□□□□ 0.49
COL4A1-204ENST00000543140 SCFD1Q8WVM8 642 aa18.1■□□□□ 0.49
COL4A1-204ENST00000543140 ZBED3Q96IU2 234 aaPredicted RBP18.1■□□□□ 0.49
COL4A1-204ENST00000543140 TAOK3Q9H2K8 898 aa18.1■□□□□ 0.49
COL4A1-204ENST00000543140 EMILIN3Q9NT22 766 aa18.1■□□□□ 0.49
COL4A1-204ENST00000543140 ZNHIT6Q9NWK9 470 aaKnown RBP18.1■□□□□ 0.49
COL4A1-204ENST00000543140 TADA3O75528 432 aa18.09■□□□□ 0.49
COL4A1-204ENST00000543140 CASP5P51878 434 aa18.09■□□□□ 0.49
COL4A1-204ENST00000543140 PPP2R3AQ06190 1150 aa18.09■□□□□ 0.49
COL4A1-204ENST00000543140 DGKZQ13574 1117 aa18.09■□□□□ 0.49
COL4A1-204ENST00000543140 GIT2Q14161 759 aa18.09■□□□□ 0.49
COL4A1-204ENST00000543140 LDHDQ86WU2 507 aa18.09■□□□□ 0.49
COL4A1-204ENST00000543140 EIF2AK1Q9BQI3 630 aaKnown RBP18.09■□□□□ 0.49
COL4A1-204ENST00000543140 REEP2Q9BRK0 252 aa18.09■□□□□ 0.49
COL4A1-204ENST00000543140 BHMT2Q9H2M3 363 aa18.09■□□□□ 0.49
COL4A1-204ENST00000543140 GUCA1BQ9UMX6 200 aa18.09■□□□□ 0.49
COL4A1-204ENST00000543140 ASNSP08243 561 aa18.09■□□□□ 0.49
COL4A1-204ENST00000543140 INPP5BP32019 993 aa18.09■□□□□ 0.49
COL4A1-204ENST00000543140 CTTNQ14247 550 aaKnown RBP18.09■□□□□ 0.49
COL4A1-204ENST00000543140 MEA1Q16626 185 aa18.09■□□□□ 0.49
COL4A1-204ENST00000543140 KIF4BQ2VIQ3 1234 aa18.09■□□□□ 0.49
COL4A1-204ENST00000543140 CCDC40Q4G0X9 1142 aa18.09■□□□□ 0.49
COL4A1-204ENST00000543140 AGBL1Q96MI9 1066 aa18.09■□□□□ 0.49
COL4A1-204ENST00000543140 EPC1Q9H2F5 836 aa18.09■□□□□ 0.49
COL4A1-204ENST00000543140 BCAS3Q9H6U6 928 aa18.09■□□□□ 0.49
COL4A1-204ENST00000543140 SH2D4AQ9H788 454 aa18.09■□□□□ 0.49
COL4A1-204ENST00000543140 SIK3Q9Y2K2 1263 aa18.09■□□□□ 0.49
COL4A1-204ENST00000543140 TRAF1Q13077 416 aa18.08■□□□□ 0.49
COL4A1-204ENST00000543140 SYT2Q8N9I0 419 aaPredicted RBP18.08■□□□□ 0.49
COL4A1-204ENST00000543140 PIGOQ8TEQ8 1089 aa18.08■□□□□ 0.49
COL4A1-204ENST00000543140 ZSWIM4Q9H7M6 989 aa18.08■□□□□ 0.49
COL4A1-204ENST00000543140 NHEJ1Q9H9Q4 299 aaPredicted RBP18.08■□□□□ 0.49
COL4A1-204ENST00000543140 FEM1BQ9UK73 627 aa18.08■□□□□ 0.49
COL4A1-204ENST00000543140 MRPL11Q9Y3B7 192 aaKnown RBP18.08■□□□□ 0.49
COL4A1-204ENST00000543140 COL4A3BPQ9Y5P4 624 aa18.08■□□□□ 0.49
COL4A1-204ENST00000543140 RSPH10B2B2RC85 870 aa18.08■□□□□ 0.48
COL4A1-204ENST00000543140 SLC26A4O43511 780 aa18.08■□□□□ 0.48
COL4A1-204ENST00000543140 RSPH10BP0C881 870 aa18.08■□□□□ 0.48
COL4A1-204ENST00000543140 HERVK_113P62684 666 aa18.08■□□□□ 0.48
COL4A1-204ENST00000543140 LRCH2Q5VUJ6 765 aa18.08■□□□□ 0.48
COL4A1-204ENST00000543140 SMCR8Q8TEV9 937 aaPredicted RBP18.08■□□□□ 0.48
COL4A1-204ENST00000543140 PLEKP08567 350 aaPredicted RBP18.07■□□□□ 0.48
COL4A1-204ENST00000543140 CBX1P83916 185 aa18.07■□□□□ 0.48
COL4A1-204ENST00000543140 FAM160B2Q86V87 743 aa18.07■□□□□ 0.48
COL4A1-204ENST00000543140 SFR1Q86XK3 245 aa18.07■□□□□ 0.48
COL4A1-204ENST00000543140 TPH2Q8IWU9 490 aa18.07■□□□□ 0.48
COL4A1-204ENST00000543140 ASTN2O75129 1339 aaPredicted RBP18.07■□□□□ 0.48
COL4A1-204ENST00000543140 PITPNM2Q9BZ72 1349 aa18.07■□□□□ 0.48
COL4A1-204ENST00000543140 FRMD3A2A2Y4 597 aa18.07■□□□□ 0.48
COL4A1-204ENST00000543140 PHF20L1A8MW92 1017 aa18.07■□□□□ 0.48
COL4A1-204ENST00000543140 EFCAB8A8MWE9 144 aa18.07■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms