RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 TPH2Q8IWU9 490 aa16.16■□□□□ 0.18
CLIP1-216ENST00000541410 ERMNQ8TAM6 284 aa16.16■□□□□ 0.18
CLIP1-216ENST00000541410 LPAR1Q92633 364 aa16.16■□□□□ 0.18
CLIP1-216ENST00000541410 BHMT2Q9H2M3 363 aa16.16■□□□□ 0.18
CLIP1-216ENST00000541410 BMP2KQ9NSY1 1161 aaPredicted RBP16.16■□□□□ 0.18
CLIP1-216ENST00000541410 A0A0U1RQJ8 604 aa16.16■□□□□ 0.18
CLIP1-216ENST00000541410 ARHGAP6O43182 974 aa16.16■□□□□ 0.18
CLIP1-216ENST00000541410 MFAP3LO75121 409 aa16.16■□□□□ 0.18
CLIP1-216ENST00000541410 TPM2P07951 284 aa16.16■□□□□ 0.18
CLIP1-216ENST00000541410 PTPRAP18433 802 aa16.16■□□□□ 0.18
CLIP1-216ENST00000541410 TRAF1Q13077 416 aa16.16■□□□□ 0.18
CLIP1-216ENST00000541410 FAM26FQ5R3K3 315 aa16.16■□□□□ 0.18
CLIP1-216ENST00000541410 CENPPQ6IPU0 288 aa16.16■□□□□ 0.18
CLIP1-216ENST00000541410 SYT10Q6XYQ8 523 aa16.16■□□□□ 0.18
CLIP1-216ENST00000541410 OTOP1Q7RTM1 612 aa16.16■□□□□ 0.18
CLIP1-216ENST00000541410 SCYL3Q8IZE3 742 aa16.16■□□□□ 0.18
CLIP1-216ENST00000541410 MB21D1Q8N884 522 aa16.16■□□□□ 0.18
CLIP1-216ENST00000541410 ATRIPQ8WXE1 791 aa16.16■□□□□ 0.18
CLIP1-216ENST00000541410 ATG4CQ96DT6 458 aa16.16■□□□□ 0.18
CLIP1-216ENST00000541410 DNM3Q9UQ16 869 aa16.16■□□□□ 0.18
CLIP1-216ENST00000541410 DOCK1Q14185 1865 aa16.16■□□□□ 0.18
CLIP1-216ENST00000541410 SFI1A8K8P3 1242 aa16.15■□□□□ 0.18
CLIP1-216ENST00000541410 RSPH10B2B2RC85 870 aa16.15■□□□□ 0.18
CLIP1-216ENST00000541410 RSPH10BP0C881 870 aa16.15■□□□□ 0.18
CLIP1-216ENST00000541410 EEF1GP26641 437 aaKnown RBP16.15■□□□□ 0.18
CLIP1-216ENST00000541410 DCAF15Q66K64 600 aa16.15■□□□□ 0.18
CLIP1-216ENST00000541410 TRMT1LQ7Z2T5 733 aaKnown RBP16.15■□□□□ 0.18
CLIP1-216ENST00000541410 DYDC2Q96IM9 177 aa16.15■□□□□ 0.18
CLIP1-216ENST00000541410 ZNF577Q9BSK1 485 aa16.15■□□□□ 0.18
CLIP1-216ENST00000541410 WDR11Q9BZH6 1224 aa16.15■□□□□ 0.18
CLIP1-216ENST00000541410 LRRC27Q9C0I9 530 aa16.15■□□□□ 0.18
CLIP1-216ENST00000541410 PICK1Q9NRD5 415 aa16.15■□□□□ 0.18
CLIP1-216ENST00000541410 PPP2R2CQ9Y2T4 447 aa16.15■□□□□ 0.18
CLIP1-216ENST00000541410 RIPK3Q9Y572 518 aa16.15■□□□□ 0.18
CLIP1-216ENST00000541410 CTDP1Q9Y5B0 961 aaPredicted RBP16.15■□□□□ 0.18
CLIP1-216ENST00000541410 COL11A1P12107 1806 aaPredicted RBP16.15■□□□□ 0.18
CLIP1-216ENST00000541410 LGALS16A8MUM7 142 aa16.15■□□□□ 0.18
CLIP1-216ENST00000541410 STX10O60499 249 aa16.15■□□□□ 0.18
CLIP1-216ENST00000541410 GAS7O60861 476 aa16.15■□□□□ 0.18
CLIP1-216ENST00000541410 ITGB5P18084 799 aa16.15■□□□□ 0.18
CLIP1-216ENST00000541410 CASP5P51878 434 aa16.15■□□□□ 0.18
CLIP1-216ENST00000541410 TERF1P54274 439 aa16.15■□□□□ 0.18
CLIP1-216ENST00000541410 RAD9BQ6WBX8 426 aa16.15■□□□□ 0.18
CLIP1-216ENST00000541410 REXO1L1PQ8IX06 675 aa16.15■□□□□ 0.18
CLIP1-216ENST00000541410 NOC4LQ9BVI4 516 aaKnown RBP16.15■□□□□ 0.18
CLIP1-216ENST00000541410 SLC38A10Q9HBR0 1119 aa16.15■□□□□ 0.18
CLIP1-216ENST00000541410 PPP1R9AQ9ULJ8 1098 aa16.15■□□□□ 0.18
CLIP1-216ENST00000541410 PSMD10O75832 226 aa16.14■□□□□ 0.17
CLIP1-216ENST00000541410 EIF2AK2P19525 551 aaKnown RBP16.14■□□□□ 0.17
CLIP1-216ENST00000541410 LMNB1P20700 586 aa16.14■□□□□ 0.17
CLIP1-216ENST00000541410 BACE1P56817 501 aa16.14■□□□□ 0.17
CLIP1-216ENST00000541410 NSMFQ6X4W1 530 aa16.14■□□□□ 0.17
CLIP1-216ENST00000541410 GPIHBP1Q8IV16 184 aa16.14■□□□□ 0.17
CLIP1-216ENST00000541410 MYOCDQ8IZQ8 938 aa16.14■□□□□ 0.17
CLIP1-216ENST00000541410 GUF1Q8N442 669 aaKnown RBP16.14■□□□□ 0.17
CLIP1-216ENST00000541410 ZNF507Q8TCN5 953 aa16.14■□□□□ 0.17
CLIP1-216ENST00000541410 REEP2Q9BRK0 252 aa16.14■□□□□ 0.17
CLIP1-216ENST00000541410 RUSC1Q9BVN2 902 aa16.14■□□□□ 0.17
CLIP1-216ENST00000541410 SBF1O95248 1867 aa16.14■□□□□ 0.17
CLIP1-216ENST00000541410 HSD17B4P51659 736 aa16.14■□□□□ 0.17
CLIP1-216ENST00000541410 SEMA3FQ13275 785 aa16.14■□□□□ 0.17
CLIP1-216ENST00000541410 MIIPQ5JXC2 388 aa16.14■□□□□ 0.17
CLIP1-216ENST00000541410 APOBEC3FQ8IUX4 373 aaKnown RBP16.14■□□□□ 0.17
CLIP1-216ENST00000541410 CCDC65Q8IXS2 484 aa16.14■□□□□ 0.17
CLIP1-216ENST00000541410 ZNF280CQ8ND82 737 aa16.14■□□□□ 0.17
CLIP1-216ENST00000541410 TAAR1Q96RJ0 339 aa16.14■□□□□ 0.17
CLIP1-216ENST00000541410 UNC45AQ9H3U1 944 aa16.14■□□□□ 0.17
CLIP1-216ENST00000541410 WRAP73Q9P2S5 460 aaPredicted RBP16.14■□□□□ 0.17
CLIP1-216ENST00000541410 TTC26A0AVF1 554 aa16.13■□□□□ 0.17
CLIP1-216ENST00000541410 SLITRK3O94933 977 aa16.13■□□□□ 0.17
CLIP1-216ENST00000541410 KRT9P35527 623 aa16.13■□□□□ 0.17
CLIP1-216ENST00000541410 RPS6P62753 249 aaKnown RBP16.13■□□□□ 0.17
CLIP1-216ENST00000541410 TBC1D8BQ0IIM8 1120 aa16.13■□□□□ 0.17
CLIP1-216ENST00000541410 GIT2Q14161 759 aa16.13■□□□□ 0.17
CLIP1-216ENST00000541410 GPC2Q8N158 579 aa16.13■□□□□ 0.17
CLIP1-216ENST00000541410 PCMTD1Q96MG8 357 aaPredicted RBP16.13■□□□□ 0.17
CLIP1-216ENST00000541410 PANX2Q96RD6 677 aa16.13■□□□□ 0.17
CLIP1-216ENST00000541410 KCND1Q9NSA2 647 aa16.13■□□□□ 0.17
CLIP1-216ENST00000541410 PCDHA2Q9Y5H9 948 aa16.13■□□□□ 0.17
CLIP1-216ENST00000541410 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.13■□□□□ 0.171e-6■■□□□ 13.9
CLIP1-216ENST00000541410 ITIH6Q6UXX5 1313 aa16.13■□□□□ 0.17
CLIP1-216ENST00000541410 IPO5O00410 1097 aaKnown RBP16.13■□□□□ 0.17
CLIP1-216ENST00000541410 PEX10O60683 326 aa16.13■□□□□ 0.17
CLIP1-216ENST00000541410 MYCLP12524 364 aaPredicted RBP16.13■□□□□ 0.17
CLIP1-216ENST00000541410 KCNJ6P48051 423 aa16.13■□□□□ 0.17
CLIP1-216ENST00000541410 SYCP1Q15431 976 aa16.13■□□□□ 0.17
CLIP1-216ENST00000541410 SFR1Q86XK3 245 aa16.13■□□□□ 0.17
CLIP1-216ENST00000541410 SYT2Q8N9I0 419 aaPredicted RBP16.13■□□□□ 0.17
CLIP1-216ENST00000541410 BANK1Q8NDB2 785 aa16.13■□□□□ 0.17
CLIP1-216ENST00000541410 SLC5A5Q92911 643 aa16.13■□□□□ 0.17
CLIP1-216ENST00000541410 TRERF1Q96PN7 1200 aa16.13■□□□□ 0.17
CLIP1-216ENST00000541410 ABHD10Q9NUJ1 306 aa16.13■□□□□ 0.17
CLIP1-216ENST00000541410 RABGAP1Q9Y3P9 1069 aa16.13■□□□□ 0.17
CLIP1-216ENST00000541410 TRAF5O00463 557 aa16.12■□□□□ 0.17
CLIP1-216ENST00000541410 VWA5AO00534 786 aa16.12■□□□□ 0.17
CLIP1-216ENST00000541410 TPM1P09493 284 aa16.12■□□□□ 0.17
CLIP1-216ENST00000541410 ERVK-24P63145 666 aa16.12■□□□□ 0.17
CLIP1-216ENST00000541410 NAA30Q147X3 362 aaPredicted RBP16.12■□□□□ 0.17
CLIP1-216ENST00000541410 CNGA4Q8IV77 575 aa16.12■□□□□ 0.17
CLIP1-216ENST00000541410 CCDC155Q8N6L0 562 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms