RNA–Protein interactions for RNA: ENST00000540998.5

CDC42SE1-207, Transcript of CDC42 small effector 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CDC42SE1, Length 3,181 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42SE1-207ENST00000540998 MEIS1O00470 390 aa11.41□□□□□ -0.58
CDC42SE1-207ENST00000540998 SLC9A1P19634 815 aa11.41□□□□□ -0.58
CDC42SE1-207ENST00000540998 NR1D1P20393 614 aa11.41□□□□□ -0.58
CDC42SE1-207ENST00000540998 CDK17Q00537 523 aa11.41□□□□□ -0.58
CDC42SE1-207ENST00000540998 SFMBT2Q5VUG0 894 aa11.41□□□□□ -0.58
CDC42SE1-207ENST00000540998 MMS22LQ6ZRQ5 1243 aa11.41□□□□□ -0.58
CDC42SE1-207ENST00000540998 DAGLBQ8NCG7 672 aa11.41□□□□□ -0.58
CDC42SE1-207ENST00000540998 RAD54LQ92698 747 aa11.41□□□□□ -0.58
CDC42SE1-207ENST00000540998 MTMR9Q96QG7 549 aa11.41□□□□□ -0.58
CDC42SE1-207ENST00000540998 CELF4Q9BZC1 486 aaKnown RBP11.41□□□□□ -0.58
CDC42SE1-207ENST00000540998 LAMB1P07942 1786 aa11.41□□□□□ -0.58
CDC42SE1-207ENST00000540998 MYH4Q9Y623 1939 aa11.41□□□□□ -0.58
CDC42SE1-207ENST00000540998 POTEB3A0JP26 581 aa11.4□□□□□ -0.58
CDC42SE1-207ENST00000540998 POTECB2RU33 542 aa11.4□□□□□ -0.58
CDC42SE1-207ENST00000540998 H0YHG0 523 aa11.4□□□□□ -0.58
CDC42SE1-207ENST00000540998 GUCY2CP25092 1073 aa11.4□□□□□ -0.58
CDC42SE1-207ENST00000540998 BTDP43251 543 aa11.4□□□□□ -0.58
CDC42SE1-207ENST00000540998 SNAP25P60880 206 aa11.4□□□□□ -0.58
CDC42SE1-207ENST00000540998 IRX3P78415 501 aaPredicted RBP11.4□□□□□ -0.58
CDC42SE1-207ENST00000540998 AMPD3Q01432 767 aa11.4□□□□□ -0.58
CDC42SE1-207ENST00000540998 MKRN4PQ13434 485 aaPredicted RBP11.4□□□□□ -0.58
CDC42SE1-207ENST00000540998 POTEBQ6S5H4 581 aa11.4□□□□□ -0.58
CDC42SE1-207ENST00000540998 TMCO5BA8MYB1 307 aa11.4□□□□□ -0.58
CDC42SE1-207ENST00000540998 CEP104O60308 925 aa11.4□□□□□ -0.58
CDC42SE1-207ENST00000540998 PPP1R11O60927 126 aaPredicted RBP11.4□□□□□ -0.58
CDC42SE1-207ENST00000540998 LCA5LO95447 670 aa11.4□□□□□ -0.58
CDC42SE1-207ENST00000540998 QPCTQ16769 361 aa11.4□□□□□ -0.58
CDC42SE1-207ENST00000540998 IFT20Q8IY31 132 aa11.4□□□□□ -0.58
CDC42SE1-207ENST00000540998 SNED1Q8TER0 1413 aa11.4□□□□□ -0.58
CDC42SE1-207ENST00000540998 AK8Q96MA6 479 aa11.4□□□□□ -0.58
CDC42SE1-207ENST00000540998 INPP4AQ96PE3 977 aaPredicted RBP11.4□□□□□ -0.58
CDC42SE1-207ENST00000540998 GDF3Q9NR23 364 aa11.4□□□□□ -0.58
CDC42SE1-207ENST00000540998 ZNF652Q9Y2D9 606 aa11.4□□□□□ -0.58
CDC42SE1-207ENST00000540998 MARCH6O60337 910 aa11.4□□□□□ -0.59
CDC42SE1-207ENST00000540998 MYL1P05976 194 aa11.4□□□□□ -0.59
CDC42SE1-207ENST00000540998 PTK2Q05397 1052 aa11.4□□□□□ -0.59
CDC42SE1-207ENST00000540998 KLHL30Q0D2K2 578 aa11.4□□□□□ -0.59
CDC42SE1-207ENST00000540998 UAP1Q16222 522 aaPredicted RBP11.4□□□□□ -0.59
CDC42SE1-207ENST00000540998 SLC9C1Q4G0N8 1177 aa11.4□□□□□ -0.59
CDC42SE1-207ENST00000540998 ZNF572Q7Z3I7 529 aaPredicted RBP11.4□□□□□ -0.59
CDC42SE1-207ENST00000540998 MYOCDQ8IZQ8 938 aa11.4□□□□□ -0.59
CDC42SE1-207ENST00000540998 GUF1Q8N442 669 aaKnown RBP11.4□□□□□ -0.59
CDC42SE1-207ENST00000540998 ZNF473Q8WTR7 871 aaKnown RBP11.4□□□□□ -0.59
CDC42SE1-207ENST00000540998 CAVIN3Q969G5 261 aa11.4□□□□□ -0.59
CDC42SE1-207ENST00000540998 DNAJC19Q96DA6 116 aa11.4□□□□□ -0.59
CDC42SE1-207ENST00000540998 NLRP3Q96P20 1036 aa11.4□□□□□ -0.59
CDC42SE1-207ENST00000540998 PANK4Q9NVE7 773 aa11.4□□□□□ -0.59
CDC42SE1-207ENST00000540998 KIAA1024Q9UPX6 916 aa11.4□□□□□ -0.59
CDC42SE1-207ENST00000540998 COL4A3BPQ9Y5P4 624 aa11.4□□□□□ -0.59
CDC42SE1-207ENST00000540998 GNAQP50148 359 aa11.39□□□□□ -0.59
CDC42SE1-207ENST00000540998 UBAP2Q5T6F2 1119 aaKnown RBP11.39□□□□□ -0.59
CDC42SE1-207ENST00000540998 CCDC84Q86UT8 332 aaPredicted RBP11.39□□□□□ -0.59
CDC42SE1-207ENST00000540998 OTUD6BQ8N6M0 293 aa11.39□□□□□ -0.59
CDC42SE1-207ENST00000540998 DPH5Q9H2P9 285 aa11.39□□□□□ -0.59
CDC42SE1-207ENST00000540998 NR2E1Q9Y466 385 aa11.39□□□□□ -0.59
CDC42SE1-207ENST00000540998 PCNTO95613 3336 aa11.39□□□□□ -0.59
CDC42SE1-207ENST00000540998 ROBO1Q9Y6N7 1651 aa11.39□□□□□ -0.59
CDC42SE1-207ENST00000540998 USP17L15C9J2P7 530 aa11.39□□□□□ -0.59
CDC42SE1-207ENST00000540998 USP17L13C9JLJ4 530 aa11.39□□□□□ -0.59
CDC42SE1-207ENST00000540998 USP17L11C9JVI0 530 aa11.39□□□□□ -0.59
CDC42SE1-207ENST00000540998 USP17L18D6R9N7 530 aa11.39□□□□□ -0.59
CDC42SE1-207ENST00000540998 USP17L22D6RA61 530 aa11.39□□□□□ -0.59
CDC42SE1-207ENST00000540998 USP17L17D6RBQ6 530 aa11.39□□□□□ -0.59
CDC42SE1-207ENST00000540998 USP17L19D6RCP7 530 aa11.39□□□□□ -0.59
CDC42SE1-207ENST00000540998 USP17L20D6RJB6 530 aa11.39□□□□□ -0.59
CDC42SE1-207ENST00000540998 LAD1O00515 517 aa11.39□□□□□ -0.59
CDC42SE1-207ENST00000540998 CPP00450 1065 aa11.39□□□□□ -0.59
CDC42SE1-207ENST00000540998 USP17L24Q0WX57 530 aa11.39□□□□□ -0.59
CDC42SE1-207ENST00000540998 HERC4Q5GLZ8 1057 aaPredicted RBP11.39□□□□□ -0.59
CDC42SE1-207ENST00000540998 FAM26FQ5R3K3 315 aa11.39□□□□□ -0.59
CDC42SE1-207ENST00000540998 USP17L6PQ6QN14 398 aa11.39□□□□□ -0.59
CDC42SE1-207ENST00000540998 TEX11Q8IYF3 940 aa11.39□□□□□ -0.59
CDC42SE1-207ENST00000540998 HAS1Q92839 578 aa11.39□□□□□ -0.59
CDC42SE1-207ENST00000540998 CCT8L2Q96SF2 557 aa11.39□□□□□ -0.59
CDC42SE1-207ENST00000540998 CUEDC2Q9H467 287 aa11.39□□□□□ -0.59
CDC42SE1-207ENST00000540998 AMACRQ9UHK6 382 aa11.39□□□□□ -0.59
CDC42SE1-207ENST00000540998 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.39□□□□□ -0.59
CDC42SE1-207ENST00000540998 POTEFA5A3E0 1075 aa11.38□□□□□ -0.59
CDC42SE1-207ENST00000540998 PJA2O43164 708 aa11.38□□□□□ -0.59
CDC42SE1-207ENST00000540998 POTEIP0CG38 1075 aa11.38□□□□□ -0.59
CDC42SE1-207ENST00000540998 GNA11P29992 359 aa11.38□□□□□ -0.59
CDC42SE1-207ENST00000540998 ECHS1P30084 290 aa11.38□□□□□ -0.59
CDC42SE1-207ENST00000540998 ACTN3Q08043 901 aaPredicted RBP11.38□□□□□ -0.59
CDC42SE1-207ENST00000540998 KCNA1Q09470 495 aa11.38□□□□□ -0.59
CDC42SE1-207ENST00000540998 NAB2Q15742 525 aa11.38□□□□□ -0.59
CDC42SE1-207ENST00000540998 PTGISQ16647 500 aa11.38□□□□□ -0.59
CDC42SE1-207ENST00000540998 DCAF17Q5H9S7 520 aaPredicted RBP11.38□□□□□ -0.59
CDC42SE1-207ENST00000540998 KRT79Q5XKE5 535 aa11.38□□□□□ -0.59
CDC42SE1-207ENST00000540998 SPTY2D1Q68D10 685 aaPredicted RBP11.38□□□□□ -0.59
CDC42SE1-207ENST00000540998 POTEGQ6S5H5 508 aa11.38□□□□□ -0.59
CDC42SE1-207ENST00000540998 POTEEQ6S8J3 1075 aa11.38□□□□□ -0.59
CDC42SE1-207ENST00000540998 KCTD1Q719H9 257 aa11.38□□□□□ -0.59
CDC42SE1-207ENST00000540998 ZNF571Q7Z3V5 609 aaPredicted RBP11.38□□□□□ -0.59
CDC42SE1-207ENST00000540998 CNOT8Q9UFF9 292 aaKnown RBP11.38□□□□□ -0.59
CDC42SE1-207ENST00000540998 ATP6V0A2Q9Y487 856 aa11.38□□□□□ -0.59
CDC42SE1-207ENST00000540998 FAM196BA6NMK8 535 aa11.38□□□□□ -0.59
CDC42SE1-207ENST00000540998 PRLRP16471 622 aa11.38□□□□□ -0.59
CDC42SE1-207ENST00000540998 HSD17B3P37058 310 aa11.38□□□□□ -0.59
CDC42SE1-207ENST00000540998 PSMC6P62333 389 aa11.38□□□□□ -0.59
CDC42SE1-207ENST00000540998 SKOR1P84550 965 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms