RNA–Protein interactions for RNA: ENST00000540896.1

CLTCL1-206, Transcript of clathrin heavy chain like 1, humanhuman

TSL 4

Gene CLTCL1, Length 477 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLTCL1-206ENST00000540896 EHMT1Q9H9B1 1298 aa7.56□□□□□ -1.2
CLTCL1-206ENST00000540896 RNF186Q9NXI6 227 aa7.56□□□□□ -1.2
CLTCL1-206ENST00000540896 RTEL1Q9NZ71 1219 aa7.56□□□□□ -1.2
CLTCL1-206ENST00000540896 LIMD1Q9UGP4 676 aa7.56□□□□□ -1.2
CLTCL1-206ENST00000540896 CLIC4Q9Y696 253 aa7.56□□□□□ -1.2
CLTCL1-206ENST00000540896 ZNF536O15090 1300 aa7.55□□□□□ -1.2
CLTCL1-206ENST00000540896 PTPRFP10586 1907 aa7.55□□□□□ -1.2
CLTCL1-206ENST00000540896 ADAMTS3O15072 1205 aa7.55□□□□□ -1.2
CLTCL1-206ENST00000540896 SPTLC2O15270 562 aa7.55□□□□□ -1.2
CLTCL1-206ENST00000540896 MARCH6O60337 910 aa7.55□□□□□ -1.2
CLTCL1-206ENST00000540896 CYP2C8P10632 490 aa7.55□□□□□ -1.2
CLTCL1-206ENST00000540896 MCM7P33993 719 aa7.55□□□□□ -1.2
CLTCL1-206ENST00000540896 TRAPPC10P48553 1259 aa7.55□□□□□ -1.2
CLTCL1-206ENST00000540896 TOB1P50616 345 aaPredicted RBP7.55□□□□□ -1.2
CLTCL1-206ENST00000540896 HERVK_113P62684 666 aa7.55□□□□□ -1.2
CLTCL1-206ENST00000540896 TMEM132BQ14DG7 1078 aa7.55□□□□□ -1.2
CLTCL1-206ENST00000540896 ZNF174Q15697 407 aa7.55□□□□□ -1.2
CLTCL1-206ENST00000540896 SKOR2Q2VWA4 1001 aaPredicted RBP7.55□□□□□ -1.2
CLTCL1-206ENST00000540896 LETM2Q2VYF4 491 aa7.55□□□□□ -1.2
CLTCL1-206ENST00000540896 TKFCQ3LXA3 575 aa7.55□□□□□ -1.2
CLTCL1-206ENST00000540896 NOM1Q5C9Z4 860 aaKnown RBP7.55□□□□□ -1.2
CLTCL1-206ENST00000540896 EARS2Q5JPH6 523 aaKnown RBP7.55□□□□□ -1.2
CLTCL1-206ENST00000540896 NSMFQ6X4W1 530 aa7.55□□□□□ -1.2
CLTCL1-206ENST00000540896 CCAR1Q8IX12 1150 aaKnown RBP7.55□□□□□ -1.2
CLTCL1-206ENST00000540896 KCNG4Q8TDN1 519 aa7.55□□□□□ -1.2
CLTCL1-206ENST00000540896 TBCKQ8TEA7 893 aa7.55□□□□□ -1.2
CLTCL1-206ENST00000540896 LEO1Q8WVC0 666 aaPredicted RBP7.55□□□□□ -1.2
CLTCL1-206ENST00000540896 TNFRSF25Q93038 417 aa7.55□□□□□ -1.2
CLTCL1-206ENST00000540896 PGBD1Q96JS3 809 aa7.55□□□□□ -1.2
CLTCL1-206ENST00000540896 TEX13BQ9BXU2 312 aa7.55□□□□□ -1.2
CLTCL1-206ENST00000540896 ZCCHC17Q9NP64 241 aaKnown RBP7.55□□□□□ -1.2
CLTCL1-206ENST00000540896 RNF146Q9NTX7 359 aa7.55□□□□□ -1.2
CLTCL1-206ENST00000540896 POLR3EQ9NVU0 708 aa7.55□□□□□ -1.2
CLTCL1-206ENST00000540896 RCOR1Q9UKL0 485 aa7.55□□□□□ -1.2
CLTCL1-206ENST00000540896 ADAMTS5Q9UNA0 930 aa7.55□□□□□ -1.2
CLTCL1-206ENST00000540896 SLC45A1Q9Y2W3 748 aa7.55□□□□□ -1.2
CLTCL1-206ENST00000540896 MAP4K5Q9Y4K4 846 aa7.55□□□□□ -1.2
CLTCL1-206ENST00000540896 PCDHB6Q9Y5E3 794 aa7.55□□□□□ -1.2
CLTCL1-206ENST00000540896 DDX49Q9Y6V7 483 aaKnown RBP7.55□□□□□ -1.2
CLTCL1-206ENST00000540896 THSD7BQ9C0I4 1608 aa7.55□□□□□ -1.2
CLTCL1-206ENST00000540896 LOC285556D6RIA3 1793 aa7.54□□□□□ -1.2
CLTCL1-206ENST00000540896 M0R2N6 131 aa7.54□□□□□ -1.2
CLTCL1-206ENST00000540896 PIK3CDO00329 1044 aa7.54□□□□□ -1.2
CLTCL1-206ENST00000540896 NFIBO00712 420 aa7.54□□□□□ -1.2
CLTCL1-206ENST00000540896 MEIS2O14770 477 aa7.54□□□□□ -1.2
CLTCL1-206ENST00000540896 ATP2A1O14983 1001 aa7.54□□□□□ -1.2
CLTCL1-206ENST00000540896 CA12O43570 354 aa7.54□□□□□ -1.2
CLTCL1-206ENST00000540896 CCNT1O60563 726 aaKnown RBP7.54□□□□□ -1.2
CLTCL1-206ENST00000540896 YEATS4O95619 227 aa7.54□□□□□ -1.2
CLTCL1-206ENST00000540896 TBC1D8O95759 1140 aa7.54□□□□□ -1.2
CLTCL1-206ENST00000540896 BMP15O95972 392 aa7.54□□□□□ -1.2
CLTCL1-206ENST00000540896 MARCKSP29966 332 aaPredicted RBP7.54□□□□□ -1.2
CLTCL1-206ENST00000540896 ZNF76P36508 570 aa7.54□□□□□ -1.2
CLTCL1-206ENST00000540896 GMPRP36959 345 aa7.54□□□□□ -1.2
CLTCL1-206ENST00000540896 GRM5P41594 1212 aa7.54□□□□□ -1.2
CLTCL1-206ENST00000540896 NASPP49321 788 aaPredicted RBP7.54□□□□□ -1.2
CLTCL1-206ENST00000540896 CLK2P49760 499 aaKnown RBP7.54□□□□□ -1.2
CLTCL1-206ENST00000540896 CRHR2Q13324 411 aa7.54□□□□□ -1.2
CLTCL1-206ENST00000540896 AP3B2Q13367 1082 aa7.54□□□□□ -1.2
CLTCL1-206ENST00000540896 SLC39A14Q15043 492 aa7.54□□□□□ -1.2
CLTCL1-206ENST00000540896 TAF1CQ15572 869 aaPredicted RBP7.54□□□□□ -1.2
CLTCL1-206ENST00000540896 QPCTQ16769 361 aa7.54□□□□□ -1.2
CLTCL1-206ENST00000540896 MUM1L1Q5H9M0 696 aa7.54□□□□□ -1.2
CLTCL1-206ENST00000540896 WDR78Q5VTH9 848 aa7.54□□□□□ -1.2
CLTCL1-206ENST00000540896 LBX2Q6XYB7 198 aa7.54□□□□□ -1.2
CLTCL1-206ENST00000540896 RNF207Q6ZRF8 634 aa7.54□□□□□ -1.2
CLTCL1-206ENST00000540896 NEK8Q86SG6 692 aa7.54□□□□□ -1.2
CLTCL1-206ENST00000540896 NCAPG2Q86XI2 1143 aa7.54□□□□□ -1.2
CLTCL1-206ENST00000540896 TEX2Q8IWB9 1127 aa7.54□□□□□ -1.2
CLTCL1-206ENST00000540896 ZSCAN1Q8NBB4 408 aa7.54□□□□□ -1.2
CLTCL1-206ENST00000540896 LINC00301Q8NCQ3 95 aa7.54□□□□□ -1.2
CLTCL1-206ENST00000540896 GTF3C2Q8WUA4 911 aaPredicted RBP7.54□□□□□ -1.2
CLTCL1-206ENST00000540896 TBC1D5Q92609 795 aa7.54□□□□□ -1.2
CLTCL1-206ENST00000540896 PARK7Q99497 189 aaKnown RBP7.54□□□□□ -1.2
CLTCL1-206ENST00000540896 NAP1L4Q99733 375 aaKnown RBP7.54□□□□□ -1.2
CLTCL1-206ENST00000540896 SPATC1LQ9H0A9 340 aa7.54□□□□□ -1.2
CLTCL1-206ENST00000540896 ACAD9Q9H845 621 aa7.54□□□□□ -1.2
CLTCL1-206ENST00000540896 ZFYVE28Q9HCC9 887 aa7.54□□□□□ -1.2
CLTCL1-206ENST00000540896 LMBRD1Q9NUN5 540 aa7.54□□□□□ -1.2
CLTCL1-206ENST00000540896 BAZ2BQ9UIF8 2168 aaKnown RBP7.54□□□□□ -1.2
CLTCL1-206ENST00000540896 ELP1O95163 1332 aa7.53□□□□□ -1.2
CLTCL1-206ENST00000540896 OPLAHO14841 1288 aa7.53□□□□□ -1.2
CLTCL1-206ENST00000540896 TRAK2O60296 914 aa7.53□□□□□ -1.2
CLTCL1-206ENST00000540896 MAN1A2O60476 641 aa7.53□□□□□ -1.2
CLTCL1-206ENST00000540896 NEMFO60524 1076 aa7.53□□□□□ -1.2
CLTCL1-206ENST00000540896 PEX10O60683 326 aa7.53□□□□□ -1.2
CLTCL1-206ENST00000540896 GADD45BO75293 160 aaPredicted RBP7.53□□□□□ -1.2
CLTCL1-206ENST00000540896 SLC25A27O95847 323 aa7.53□□□□□ -1.2
CLTCL1-206ENST00000540896 COPB2P35606 906 aa7.53□□□□□ -1.2
CLTCL1-206ENST00000540896 GCLCP48506 637 aaPredicted RBP7.53□□□□□ -1.2
CLTCL1-206ENST00000540896 USP11P51784 963 aa7.53□□□□□ -1.2
CLTCL1-206ENST00000540896 UBE2HP62256 183 aa7.53□□□□□ -1.2
CLTCL1-206ENST00000540896 CCNA1P78396 465 aa7.53□□□□□ -1.2
CLTCL1-206ENST00000540896 BAATQ14032 418 aaPredicted RBP7.53□□□□□ -1.2
CLTCL1-206ENST00000540896 LCE2CQ5TA81 110 aa7.53□□□□□ -1.2
CLTCL1-206ENST00000540896 RIOX2Q8IUF8 465 aa7.53□□□□□ -1.2
CLTCL1-206ENST00000540896 TRMT44Q8IYL2 757 aaKnown RBP7.53□□□□□ -1.2
CLTCL1-206ENST00000540896 ANKRD35Q8N283 1001 aa7.53□□□□□ -1.2
CLTCL1-206ENST00000540896 SAMD3Q8N6K7 520 aa7.53□□□□□ -1.2
CLTCL1-206ENST00000540896 TMEM87AQ8NBN3 555 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms