RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 FERMT2Q96AC1 680 aa11.94□□□□□ -0.5
VPS33A-204ENST00000540669 CDHR1Q96JP9 859 aa11.94□□□□□ -0.5
VPS33A-204ENST00000540669 MPHOSPH6Q99547 160 aaKnown RBP11.94□□□□□ -0.5
VPS33A-204ENST00000540669 TFIP11Q9UBB9 837 aaKnown RBP11.94□□□□□ -0.5
VPS33A-204ENST00000540669 SCN10AQ9Y5Y9 1956 aa11.93□□□□□ -0.5
VPS33A-204ENST00000540669 A0A1W2PQ27 194 aa11.93□□□□□ -0.5
VPS33A-204ENST00000540669 A0A1W2PQ64 194 aa11.93□□□□□ -0.5
VPS33A-204ENST00000540669 A0A1W2PQD8 194 aa11.93□□□□□ -0.5
VPS33A-204ENST00000540669 IPO5O00410 1097 aaKnown RBP11.93□□□□□ -0.5
VPS33A-204ENST00000540669 CCNE2O96020 404 aa11.93□□□□□ -0.5
VPS33A-204ENST00000540669 SP2Q02086 613 aa11.93□□□□□ -0.5
VPS33A-204ENST00000540669 ARHGAP1Q07960 439 aa11.93□□□□□ -0.5
VPS33A-204ENST00000540669 KCNV1Q6PIU1 500 aa11.93□□□□□ -0.5
VPS33A-204ENST00000540669 SLFN12Q8IYM2 578 aa11.93□□□□□ -0.5
VPS33A-204ENST00000540669 SCFD2Q8WU76 684 aa11.93□□□□□ -0.5
VPS33A-204ENST00000540669 ABHD8Q96I13 439 aa11.93□□□□□ -0.5
VPS33A-204ENST00000540669 GDPD2Q9HCC8 539 aa11.93□□□□□ -0.5
VPS33A-204ENST00000540669 LMBRD1Q9NUN5 540 aa11.93□□□□□ -0.5
VPS33A-204ENST00000540669 DDX41Q9UJV9 622 aaKnown RBP11.93□□□□□ -0.5
VPS33A-204ENST00000540669 PCDHA7Q9UN72 937 aa11.93□□□□□ -0.5
VPS33A-204ENST00000540669 HPSEQ9Y251 543 aa11.93□□□□□ -0.5
VPS33A-204ENST00000540669 CCDC85CA6NKD9 419 aa11.92□□□□□ -0.5
VPS33A-204ENST00000540669 CUTAO60888 179 aa11.92□□□□□ -0.5
VPS33A-204ENST00000540669 FARP2O94887 1054 aaPredicted RBP11.92□□□□□ -0.5
VPS33A-204ENST00000540669 ATG7O95352 703 aa11.92□□□□□ -0.5
VPS33A-204ENST00000540669 HMGCRP04035 888 aa11.92□□□□□ -0.5
VPS33A-204ENST00000540669 MYCLP12524 364 aaPredicted RBP11.92□□□□□ -0.5
VPS33A-204ENST00000540669 CYP2B6P20813 491 aa11.92□□□□□ -0.5
VPS33A-204ENST00000540669 CYP2C19P33261 490 aa11.92□□□□□ -0.5
VPS33A-204ENST00000540669 LONP1P36776 959 aaKnown RBP11.92□□□□□ -0.5
VPS33A-204ENST00000540669 ACVR2BQ13705 512 aa11.92□□□□□ -0.5
VPS33A-204ENST00000540669 STK38Q15208 465 aa11.92□□□□□ -0.5
VPS33A-204ENST00000540669 FOXD4L6Q3SYB3 417 aaPredicted RBP11.92□□□□□ -0.5
VPS33A-204ENST00000540669 SLC9C1Q4G0N8 1177 aa11.92□□□□□ -0.5
VPS33A-204ENST00000540669 HYIQ5T013 277 aa11.92□□□□□ -0.5
VPS33A-204ENST00000540669 TMEM63BQ5T3F8 832 aa11.92□□□□□ -0.5
VPS33A-204ENST00000540669 SHC4Q6S5L8 630 aa11.92□□□□□ -0.5
VPS33A-204ENST00000540669 FOXD4L3Q6VB84 417 aaPredicted RBP11.92□□□□□ -0.5
VPS33A-204ENST00000540669 NLRX1Q86UT6 975 aa11.92□□□□□ -0.5
VPS33A-204ENST00000540669 KRI1Q8N9T8 703 aaKnown RBP11.92□□□□□ -0.5
VPS33A-204ENST00000540669 SLAIN1Q8ND83 568 aa11.92□□□□□ -0.5
VPS33A-204ENST00000540669 ZFP91Q96JP5 570 aaPredicted RBP11.92□□□□□ -0.5
VPS33A-204ENST00000540669 SPATA32Q96LK8 384 aa11.92□□□□□ -0.5
VPS33A-204ENST00000540669 AK8Q96MA6 479 aa11.92□□□□□ -0.5
VPS33A-204ENST00000540669 GBP4Q96PP9 640 aa11.92□□□□□ -0.5
VPS33A-204ENST00000540669 MMTAG2Q9BU76 263 aaKnown RBP11.92□□□□□ -0.5
VPS33A-204ENST00000540669 PDGFCQ9NRA1 345 aa11.92□□□□□ -0.5
VPS33A-204ENST00000540669 GNEQ9Y223 722 aaKnown RBP11.92□□□□□ -0.5
VPS33A-204ENST00000540669 IGSF9BQ9UPX0 1349 aa11.91□□□□□ -0.5
VPS33A-204ENST00000540669 IGKV6D-21A0A0A0MT36 114 aa11.91□□□□□ -0.5
VPS33A-204ENST00000540669 CTAGE5O15320 804 aa11.91□□□□□ -0.5
VPS33A-204ENST00000540669 SLC26A4O43511 780 aa11.91□□□□□ -0.5
VPS33A-204ENST00000540669 ATP2B1P20020 1258 aa11.91□□□□□ -0.5
VPS33A-204ENST00000540669 CEBPZQ03701 1054 aaKnown RBP11.91□□□□□ -0.5
VPS33A-204ENST00000540669 PDIA5Q14554 519 aa11.91□□□□□ -0.5
VPS33A-204ENST00000540669 DUSP28Q4G0W2 176 aa11.91□□□□□ -0.5
VPS33A-204ENST00000540669 LRCH2Q5VUJ6 765 aa11.91□□□□□ -0.5
VPS33A-204ENST00000540669 RESP18Q5W5W9 173 aa11.91□□□□□ -0.5
VPS33A-204ENST00000540669 ADALQ6DHV7 355 aa11.91□□□□□ -0.5
VPS33A-204ENST00000540669 ZNF746Q6NUN9 644 aaPredicted RBP11.91□□□□□ -0.5
VPS33A-204ENST00000540669 METTL7BQ6UX53 244 aa11.91□□□□□ -0.5
VPS33A-204ENST00000540669 RDM1Q8NG50 284 aa11.91□□□□□ -0.5
VPS33A-204ENST00000540669 GJA10Q969M2 543 aa11.91□□□□□ -0.5
VPS33A-204ENST00000540669 ZNF577Q9BSK1 485 aa11.91□□□□□ -0.5
VPS33A-204ENST00000540669 UPF3AQ9H1J1 476 aaKnown RBP11.91□□□□□ -0.5
VPS33A-204ENST00000540669 UNC45AQ9H3U1 944 aa11.91□□□□□ -0.5
VPS33A-204ENST00000540669 BCAS3Q9H6U6 928 aa11.91□□□□□ -0.5
VPS33A-204ENST00000540669 TTC12Q9H892 705 aaPredicted RBP11.91□□□□□ -0.5
VPS33A-204ENST00000540669 TBC1D22BQ9NU19 505 aa11.91□□□□□ -0.5
VPS33A-204ENST00000540669 PTPN22Q9Y2R2 807 aa11.91□□□□□ -0.5
VPS33A-204ENST00000540669 PTCH2Q9Y6C5 1203 aa11.91□□□□□ -0.5
VPS33A-204ENST00000540669 MYH9P35579 1960 aaKnown RBP11.9□□□□□ -0.5
VPS33A-204ENST00000540669 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.9□□□□□ -0.5
VPS33A-204ENST00000540669 POTEMA6NI47 508 aa11.9□□□□□ -0.5
VPS33A-204ENST00000540669 NKRFO15226 690 aaKnown RBP eCLIP11.9□□□□□ -0.5
VPS33A-204ENST00000540669 ADCY3O60266 1144 aa11.9□□□□□ -0.5
VPS33A-204ENST00000540669 ECM2O94769 699 aaPredicted RBP11.9□□□□□ -0.5
VPS33A-204ENST00000540669 ELNP15502 786 aa11.9□□□□□ -0.5
VPS33A-204ENST00000540669 MARCKSP29966 332 aaPredicted RBP11.9□□□□□ -0.5
VPS33A-204ENST00000540669 MCM4P33991 863 aa11.9□□□□□ -0.5
VPS33A-204ENST00000540669 ZNF76P36508 570 aa11.9□□□□□ -0.5
VPS33A-204ENST00000540669 ADCYAP1R1P41586 468 aa11.9□□□□□ -0.5
VPS33A-204ENST00000540669 KRT76Q01546 638 aa11.9□□□□□ -0.5
VPS33A-204ENST00000540669 CACNB2Q08289 660 aaPredicted RBP11.9□□□□□ -0.5
VPS33A-204ENST00000540669 TRIM32Q13049 653 aa11.9□□□□□ -0.5
VPS33A-204ENST00000540669 E2F4Q16254 413 aa11.9□□□□□ -0.5
VPS33A-204ENST00000540669 CELF3Q5SZQ8 465 aaKnown RBP11.9□□□□□ -0.5
VPS33A-204ENST00000540669 USP49Q70CQ1 688 aa11.9□□□□□ -0.5
VPS33A-204ENST00000540669 GIMAP8Q8ND71 665 aaPredicted RBP11.9□□□□□ -0.5
VPS33A-204ENST00000540669 ENGASEQ8NFI3 743 aa11.9□□□□□ -0.5
VPS33A-204ENST00000540669 LRRC15Q8TF66 581 aa11.9□□□□□ -0.5
VPS33A-204ENST00000540669 HSD17B14Q9BPX1 270 aa11.9□□□□□ -0.5
VPS33A-204ENST00000540669 TMEM106CQ9BVX2 250 aa11.9□□□□□ -0.5
VPS33A-204ENST00000540669 CCSER1Q9C0I3 900 aa11.9□□□□□ -0.5
VPS33A-204ENST00000540669 CSRNP2Q9H175 543 aa11.9□□□□□ -0.5
VPS33A-204ENST00000540669 TELO2Q9Y4R8 837 aa11.9□□□□□ -0.5
VPS33A-204ENST00000540669 EMSYQ7Z589 1322 aa11.89□□□□□ -0.51
VPS33A-204ENST00000540669 A0A087X0B3 334 aa11.89□□□□□ -0.51
VPS33A-204ENST00000540669 VWA3AA6NCI4 1184 aa11.89□□□□□ -0.51
VPS33A-204ENST00000540669 EML1O00423 815 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms