RNA–Protein interactions for RNA: ENST00000539559.6

TMEM260-203, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 2,680 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-203ENST00000539559 LSM14BQ9BX40 385 aaKnown RBP22.38■■□□□ 1.17
TMEM260-203ENST00000539559 CAPN7Q9Y6W3 813 aa22.38■■□□□ 1.17
TMEM260-203ENST00000539559 NOL4O94818 638 aa22.37■■□□□ 1.17
TMEM260-203ENST00000539559 HNRNPH1P31943 449 aaKnown RBP22.37■■□□□ 1.17
TMEM260-203ENST00000539559 SKOR1P84550 965 aa22.37■■□□□ 1.17
TMEM260-203ENST00000539559 IQCKQ8N0W5 287 aa22.37■■□□□ 1.17
TMEM260-203ENST00000539559 TRAF5O00463 557 aa22.37■■□□□ 1.17
TMEM260-203ENST00000539559 CCDC40Q4G0X9 1142 aa22.37■■□□□ 1.17
TMEM260-203ENST00000539559 FAM83BQ5T0W9 1011 aa22.37■■□□□ 1.17
TMEM260-203ENST00000539559 SNX29Q8TEQ0 813 aa22.37■■□□□ 1.17
TMEM260-203ENST00000539559 ANKS1AQ92625 1134 aa22.37■■□□□ 1.17
TMEM260-203ENST00000539559 REXO1Q8N1G1 1221 aaKnown RBP22.36■■□□□ 1.17
TMEM260-203ENST00000539559 OR2W6PQ8NHA6 318 aa22.36■■□□□ 1.17
TMEM260-203ENST00000539559 GDF3Q9NR23 364 aa22.36■■□□□ 1.17
TMEM260-203ENST00000539559 ADAMTS1Q9UHI8 967 aa22.36■■□□□ 1.17
TMEM260-203ENST00000539559 A0A087X0T9 212 aa22.36■■□□□ 1.17
TMEM260-203ENST00000539559 EDIL3O43854 480 aa22.36■■□□□ 1.17
TMEM260-203ENST00000539559 FAM228BP0C875 321 aa22.36■■□□□ 1.17
TMEM260-203ENST00000539559 HPDP32754 393 aaPredicted RBP22.36■■□□□ 1.17
TMEM260-203ENST00000539559 LSP1P33241 339 aa22.36■■□□□ 1.17
TMEM260-203ENST00000539559 RAPGEF1Q13905 1077 aa22.36■■□□□ 1.17
TMEM260-203ENST00000539559 GUF1Q8N442 669 aaKnown RBP22.36■■□□□ 1.17
TMEM260-203ENST00000539559 SFMBT2Q5VUG0 894 aa22.35■■□□□ 1.17
TMEM260-203ENST00000539559 RAD51CO43502 376 aa22.35■■□□□ 1.17
TMEM260-203ENST00000539559 GYS1P13807 737 aa22.35■■□□□ 1.17
TMEM260-203ENST00000539559 SLC9C1Q4G0N8 1177 aa22.35■■□□□ 1.17
TMEM260-203ENST00000539559 MAATS1Q7Z4T9 603 aa22.35■■□□□ 1.17
TMEM260-203ENST00000539559 DDX42Q86XP3 938 aaKnown RBP eCLIP22.35■■□□□ 1.17
TMEM260-203ENST00000539559 FAM133AQ8N9E0 248 aa22.35■■□□□ 1.17
TMEM260-203ENST00000539559 SEC63Q9UGP8 760 aaKnown RBP22.35■■□□□ 1.17
TMEM260-203ENST00000539559 USP17L5A8MUK1 530 aa22.34■■□□□ 1.17
TMEM260-203ENST00000539559 LDHBP07195 334 aaKnown RBP22.34■■□□□ 1.17
TMEM260-203ENST00000539559 GNA11P29992 359 aa22.34■■□□□ 1.17
TMEM260-203ENST00000539559 PPP1R2P41236 205 aa22.34■■□□□ 1.17
TMEM260-203ENST00000539559 IRX3P78415 501 aaPredicted RBP22.34■■□□□ 1.17
TMEM260-203ENST00000539559 SEMA3FQ13275 785 aa22.34■■□□□ 1.17
TMEM260-203ENST00000539559 KIAA0753Q2KHM9 967 aa22.34■■□□□ 1.17
TMEM260-203ENST00000539559 MTMR9Q96QG7 549 aa22.34■■□□□ 1.17
TMEM260-203ENST00000539559 EYA3Q99504 573 aa22.34■■□□□ 1.17
TMEM260-203ENST00000539559 HMGB2P26583 209 aaKnown RBP22.34■■□□□ 1.17
TMEM260-203ENST00000539559 PAK2Q13177 524 aa22.34■■□□□ 1.17
TMEM260-203ENST00000539559 GRAPQ13588 217 aa22.34■■□□□ 1.17
TMEM260-203ENST00000539559 GRAPLQ8TC17 118 aaPredicted RBP22.34■■□□□ 1.17
TMEM260-203ENST00000539559 RAD54LQ92698 747 aa22.34■■□□□ 1.17
TMEM260-203ENST00000539559 NPHP3-ACAD11A0A0J9YXS1 232 aa22.34■■□□□ 1.17
TMEM260-203ENST00000539559 NR1D1P20393 614 aa22.34■■□□□ 1.17
TMEM260-203ENST00000539559 MNAT1P51948 309 aa22.34■■□□□ 1.17
TMEM260-203ENST00000539559 CEP85LQ5SZL2 805 aa22.34■■□□□ 1.17
TMEM260-203ENST00000539559 PRR5LQ6MZQ0 368 aa22.34■■□□□ 1.17
TMEM260-203ENST00000539559 EIF6P56537 245 aaKnown RBP22.33■■□□□ 1.17
TMEM260-203ENST00000539559 HLTFQ14527 1009 aaKnown RBP eCLIP22.33■■□□□ 1.17
TMEM260-203ENST00000539559 NAA35Q5VZE5 725 aa22.33■■□□□ 1.17
TMEM260-203ENST00000539559 CLEC10AQ8IUN9 316 aa22.33■■□□□ 1.17
TMEM260-203ENST00000539559 SPZ1Q9BXG8 430 aa22.33■■□□□ 1.17
TMEM260-203ENST00000539559 PLAAQ9Y263 795 aa22.33■■□□□ 1.17
TMEM260-203ENST00000539559 SSU72P8A0A1W2PR75 194 aa22.33■■□□□ 1.16
TMEM260-203ENST00000539559 TNFRSF8P28908 595 aa22.33■■□□□ 1.16
TMEM260-203ENST00000539559 HDLBPQ00341 1268 aaKnown RBP22.33■■□□□ 1.16
TMEM260-203ENST00000539559 LRRC63Q05C16 580 aa22.33■■□□□ 1.16
TMEM260-203ENST00000539559 UBE2SQ16763 222 aa22.33■■□□□ 1.16
TMEM260-203ENST00000539559 COBLL1Q53SF7 1204 aa22.33■■□□□ 1.16
TMEM260-203ENST00000539559 OTUD6BQ8N6M0 293 aa22.33■■□□□ 1.16
TMEM260-203ENST00000539559 RUBCNQ92622 972 aa22.33■■□□□ 1.16
TMEM260-203ENST00000539559 CEP95Q96GE4 821 aa22.33■■□□□ 1.16
TMEM260-203ENST00000539559 COL4A3BPQ9Y5P4 624 aa22.33■■□□□ 1.16
TMEM260-203ENST00000539559 TNRC6CQ9HCJ0 1690 aaKnown RBP22.32■■□□□ 1.16
TMEM260-203ENST00000539559 UBR3Q6ZT12 1888 aa22.32■■□□□ 1.16
TMEM260-203ENST00000539559 PVALEFA0A1B0GWK0 134 aa22.32■■□□□ 1.16
TMEM260-203ENST00000539559 BACH1O14867 736 aa22.32■■□□□ 1.16
TMEM260-203ENST00000539559 TNNI2P48788 182 aa22.32■■□□□ 1.16
TMEM260-203ENST00000539559 COASYQ13057 564 aa22.32■■□□□ 1.16
TMEM260-203ENST00000539559 IQCDQ96DY2 449 aa22.32■■□□□ 1.16
TMEM260-203ENST00000539559 INPP4AQ96PE3 977 aaPredicted RBP22.32■■□□□ 1.16
TMEM260-203ENST00000539559 TSG101Q99816 390 aa22.32■■□□□ 1.16
TMEM260-203ENST00000539559 BRWD3Q6RI45 1802 aa22.32■■□□□ 1.16
TMEM260-203ENST00000539559 GRID2IPA4D2P6 1211 aa22.32■■□□□ 1.16
TMEM260-203ENST00000539559 ACTN1P12814 892 aa22.32■■□□□ 1.16
TMEM260-203ENST00000539559 CDK8P49336 464 aa22.32■■□□□ 1.16
TMEM260-203ENST00000539559 NAB2Q15742 525 aa22.32■■□□□ 1.16
TMEM260-203ENST00000539559 RNF187Q5TA31 235 aaPredicted RBP22.32■■□□□ 1.16
TMEM260-203ENST00000539559 MCTP2Q6DN12 878 aa22.32■■□□□ 1.16
TMEM260-203ENST00000539559 SUGP1Q8IWZ8 645 aaKnown RBP22.32■■□□□ 1.16
TMEM260-203ENST00000539559 MYOCDQ8IZQ8 938 aa22.32■■□□□ 1.16
TMEM260-203ENST00000539559 RNF10Q8N5U6 811 aaKnown RBP22.32■■□□□ 1.16
TMEM260-203ENST00000539559 H0YHG0 523 aa22.31■■□□□ 1.16
TMEM260-203ENST00000539559 FGFR1OPO95684 399 aaKnown RBP22.31■■□□□ 1.16
TMEM260-203ENST00000539559 SERPING1P05155 500 aa22.31■■□□□ 1.16
TMEM260-203ENST00000539559 GLE1Q53GS7 698 aaKnown RBP22.31■■□□□ 1.16
TMEM260-203ENST00000539559 KDM7AQ6ZMT4 941 aa22.31■■□□□ 1.16
TMEM260-203ENST00000539559 GPATCH11Q8N954 259 aa22.31■■□□□ 1.16
TMEM260-203ENST00000539559 AP1M1Q9BXS5 423 aa22.31■■□□□ 1.16
TMEM260-203ENST00000539559 PPANQ9NQ55 473 aaKnown RBP22.31■■□□□ 1.16
TMEM260-203ENST00000539559 CEP72Q9P209 647 aa22.31■■□□□ 1.16
TMEM260-203ENST00000539559 ANKIB1Q9P2G1 1089 aa22.31■■□□□ 1.16
TMEM260-203ENST00000539559 EP400Q96L91 3159 aa22.31■■□□□ 1.16
TMEM260-203ENST00000539559 KCNK3O14649 394 aa22.31■■□□□ 1.16
TMEM260-203ENST00000539559 SERPINB2P05120 415 aa22.31■■□□□ 1.16
TMEM260-203ENST00000539559 MEI1Q5TIA1 1274 aa22.31■■□□□ 1.16
TMEM260-203ENST00000539559 ZNF473Q8WTR7 871 aaKnown RBP22.31■■□□□ 1.16
TMEM260-203ENST00000539559 RPGRQ92834 1020 aaKnown RBP22.31■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms