RNA–Protein interactions for RNA: ENST00000537002.5

PTPRD-213, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 1 (best) BASIC

Gene PTPRD, Length 8,224 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-213ENST00000537002 MTHFD1LQ6UB35 978 aa5.87□□□□□ -1.47
PTPRD-213ENST00000537002 ILDR1Q86SU0 546 aaPredicted RBP5.87□□□□□ -1.47
PTPRD-213ENST00000537002 LCA5Q86VQ0 697 aa5.87□□□□□ -1.47
PTPRD-213ENST00000537002 CCDC110Q8TBZ0 833 aa5.87□□□□□ -1.47
PTPRD-213ENST00000537002 RUNDC3BQ96NL0 473 aa5.87□□□□□ -1.47
PTPRD-213ENST00000537002 EYA1Q99502 592 aa5.87□□□□□ -1.47
PTPRD-213ENST00000537002 ECT2Q9H8V3 914 aa5.87□□□□□ -1.47
PTPRD-213ENST00000537002 PRPF3O43395 683 aaKnown RBP5.87□□□□□ -1.47
PTPRD-213ENST00000537002 RPN1P04843 607 aaKnown RBP5.87□□□□□ -1.47
PTPRD-213ENST00000537002 PARP1P09874 1014 aaKnown RBP5.87□□□□□ -1.47
PTPRD-213ENST00000537002 ABCB4P21439 1286 aa5.87□□□□□ -1.47
PTPRD-213ENST00000537002 PTPREP23469 700 aa5.87□□□□□ -1.47
PTPRD-213ENST00000537002 RAB15P59190 212 aa5.87□□□□□ -1.47
PTPRD-213ENST00000537002 POLR2FP61218 127 aaKnown RBP5.87□□□□□ -1.47
PTPRD-213ENST00000537002 MKRN4PQ13434 485 aaPredicted RBP5.87□□□□□ -1.47
PTPRD-213ENST00000537002 RAD9BQ6WBX8 426 aa5.87□□□□□ -1.47
PTPRD-213ENST00000537002 STXBP4Q6ZWJ1 553 aa5.87□□□□□ -1.47
PTPRD-213ENST00000537002 PIP4K2CQ8TBX8 421 aa5.87□□□□□ -1.47
PTPRD-213ENST00000537002 TSNARE1Q96NA8 513 aa5.87□□□□□ -1.47
PTPRD-213ENST00000537002 AP1M1Q9BXS5 423 aa5.87□□□□□ -1.47
PTPRD-213ENST00000537002 SYNCQ9H7C4 482 aa5.87□□□□□ -1.47
PTPRD-213ENST00000537002 PARP2Q9UGN5 583 aa5.87□□□□□ -1.47
PTPRD-213ENST00000537002 GGT7Q9UJ14 662 aa5.87□□□□□ -1.47
PTPRD-213ENST00000537002 AMFRQ9UKV5 643 aa5.87□□□□□ -1.47
PTPRD-213ENST00000537002 ATP6V1G2O95670 118 aa5.86□□□□□ -1.47
PTPRD-213ENST00000537002 CALML3P27482 149 aa5.86□□□□□ -1.47
PTPRD-213ENST00000537002 BZW1Q7L1Q6 419 aaKnown RBP5.86□□□□□ -1.47
PTPRD-213ENST00000537002 HAUS1Q96CS2 278 aa5.86□□□□□ -1.47
PTPRD-213ENST00000537002 STAMBPL1Q96FJ0 436 aa5.86□□□□□ -1.47
PTPRD-213ENST00000537002 ACSBG1Q96GR2 724 aa5.86□□□□□ -1.47
PTPRD-213ENST00000537002 IL1RAPL1Q9NZN1 696 aa5.86□□□□□ -1.47
PTPRD-213ENST00000537002 TSPY3P0CV98 308 aa5.86□□□□□ -1.47
PTPRD-213ENST00000537002 TSPY8P0CW00 308 aa5.86□□□□□ -1.47
PTPRD-213ENST00000537002 SARSP49591 514 aaKnown RBP5.86□□□□□ -1.47
PTPRD-213ENST00000537002 PLTPP55058 493 aa5.86□□□□□ -1.47
PTPRD-213ENST00000537002 KLC1Q07866 573 aa5.86□□□□□ -1.47
PTPRD-213ENST00000537002 SCYL3Q8IZE3 742 aa5.86□□□□□ -1.47
PTPRD-213ENST00000537002 SPATA20Q8TB22 786 aa5.86□□□□□ -1.47
PTPRD-213ENST00000537002 DYNC1LI1Q9Y6G9 523 aaKnown RBP5.86□□□□□ -1.47
PTPRD-213ENST00000537002 TXKP42681 527 aa5.86□□□□□ -1.47
PTPRD-213ENST00000537002 TRAPPC10P48553 1259 aa5.86□□□□□ -1.47
PTPRD-213ENST00000537002 CLCN2P51788 898 aa5.86□□□□□ -1.47
PTPRD-213ENST00000537002 MIS18BP1Q6P0N0 1132 aa5.86□□□□□ -1.47
PTPRD-213ENST00000537002 OTUD6AQ7L8S5 288 aa5.86□□□□□ -1.47
PTPRD-213ENST00000537002 CABP7Q86V35 215 aa5.86□□□□□ -1.47
PTPRD-213ENST00000537002 SPATA4Q8NEY3 305 aa5.86□□□□□ -1.47
PTPRD-213ENST00000537002 CEP70Q8NHQ1 597 aa5.86□□□□□ -1.47
PTPRD-213ENST00000537002 AATFQ9NY61 560 aaKnown RBP eCLIP5.86□□□□□ -1.47
PTPRD-213ENST00000537002 FAM208AQ9UK61 1670 aaKnown RBP5.86□□□□□ -1.47
PTPRD-213ENST00000537002 GTPBP6O43824 516 aaPredicted RBP5.86□□□□□ -1.47
PTPRD-213ENST00000537002 COQ9O75208 318 aa5.86□□□□□ -1.47
PTPRD-213ENST00000537002 CCDC65Q8IXS2 484 aa5.86□□□□□ -1.47
PTPRD-213ENST00000537002 SPDYE1Q8NFV5 336 aaPredicted RBP5.86□□□□□ -1.47
PTPRD-213ENST00000537002 ERMNQ8TAM6 284 aa5.86□□□□□ -1.47
PTPRD-213ENST00000537002 ZNF594Q96JF6 807 aaPredicted RBP5.86□□□□□ -1.47
PTPRD-213ENST00000537002 MLXIPQ9HAP2 919 aa5.86□□□□□ -1.47
PTPRD-213ENST00000537002 ZNF287Q9HBT7 754 aa5.86□□□□□ -1.47
PTPRD-213ENST00000537002 SH3BP1Q9Y3L3 701 aa5.86□□□□□ -1.47
PTPRD-213ENST00000537002 MED1Q15648 1581 aaPredicted RBP5.86□□□□□ -1.47
PTPRD-213ENST00000537002 I3L4J1 428 aa5.86□□□□□ -1.47
PTPRD-213ENST00000537002 HSPD1P10809 573 aaKnown RBP5.86□□□□□ -1.47
PTPRD-213ENST00000537002 ACADSP16219 412 aa5.86□□□□□ -1.47
PTPRD-213ENST00000537002 HELBQ8NG08 1087 aaPredicted RBP5.86□□□□□ -1.47
PTPRD-213ENST00000537002 CAPN11Q9UMQ6 739 aa5.86□□□□□ -1.47
PTPRD-213ENST00000537002 PCDHA13Q9Y5I0 950 aa5.86□□□□□ -1.47
PTPRD-213ENST00000537002 FOXP2O15409 715 aa5.86□□□□□ -1.47
PTPRD-213ENST00000537002 TEX33O43247 280 aa5.86□□□□□ -1.47
PTPRD-213ENST00000537002 SNRPA1P09661 255 aaKnown RBP5.86□□□□□ -1.47
PTPRD-213ENST00000537002 HSPA6P17066 643 aa5.86□□□□□ -1.47
PTPRD-213ENST00000537002 AKNAD1Q5T1N1 836 aa5.86□□□□□ -1.47
PTPRD-213ENST00000537002 MIER3Q7Z3K6 550 aa5.86□□□□□ -1.47
PTPRD-213ENST00000537002 RPGRQ92834 1020 aaKnown RBP5.86□□□□□ -1.47
PTPRD-213ENST00000537002 CNOT6LQ96LI5 555 aaKnown RBP5.86□□□□□ -1.47
PTPRD-213ENST00000537002 CUEDC2Q9H467 287 aa5.86□□□□□ -1.47
PTPRD-213ENST00000537002 THAP9Q9H5L6 903 aa5.86□□□□□ -1.47
PTPRD-213ENST00000537002 SPEF2Q9C093 1822 aa5.86□□□□□ -1.47
PTPRD-213ENST00000537002 MAGEB6P1A0A0J9YX57 407 aa5.85□□□□□ -1.47
PTPRD-213ENST00000537002 POTEFA5A3E0 1075 aa5.85□□□□□ -1.47
PTPRD-213ENST00000537002 MAFGO15525 162 aa5.85□□□□□ -1.47
PTPRD-213ENST00000537002 CCNT1O60563 726 aaKnown RBP5.85□□□□□ -1.47
PTPRD-213ENST00000537002 POTEIP0CG38 1075 aa5.85□□□□□ -1.47
PTPRD-213ENST00000537002 SERPINB6P35237 376 aa5.85□□□□□ -1.47
PTPRD-213ENST00000537002 EIF4A3P38919 411 aaKnown RBP5.85□□□□□ -1.47
PTPRD-213ENST00000537002 KRT31Q15323 416 aa5.85□□□□□ -1.47
PTPRD-213ENST00000537002 POTEEQ6S8J3 1075 aa5.85□□□□□ -1.47
PTPRD-213ENST00000537002 B4GALNT2Q8NHY0 566 aa5.85□□□□□ -1.47
PTPRD-213ENST00000537002 SMCR8Q8TEV9 937 aaPredicted RBP5.85□□□□□ -1.47
PTPRD-213ENST00000537002 SEC16BQ96JE7 1060 aa5.85□□□□□ -1.47
PTPRD-213ENST00000537002 IWS1Q96ST2 819 aa5.85□□□□□ -1.47
PTPRD-213ENST00000537002 AZI2Q9H6S1 392 aa5.85□□□□□ -1.47
PTPRD-213ENST00000537002 PTPN22Q9Y2R2 807 aa5.85□□□□□ -1.47
PTPRD-213ENST00000537002 ATP8B3O60423 1300 aa5.85□□□□□ -1.47
PTPRD-213ENST00000537002 TMCC1O94876 653 aa5.85□□□□□ -1.47
PTPRD-213ENST00000537002 PENKP01210 267 aaPredicted RBP5.85□□□□□ -1.47
PTPRD-213ENST00000537002 ZFXP17010 805 aaPredicted RBP5.85□□□□□ -1.47
PTPRD-213ENST00000537002 VPS41P49754 854 aa5.85□□□□□ -1.47
PTPRD-213ENST00000537002 HSP90AA5PQ58FG0 334 aa5.85□□□□□ -1.47
PTPRD-213ENST00000537002 SPDYAQ5MJ70 313 aa5.85□□□□□ -1.47
PTPRD-213ENST00000537002 METTL16Q86W50 562 aaKnown RBP5.85□□□□□ -1.47
PTPRD-213ENST00000537002 ZSCAN29Q8IWY8 852 aaPredicted RBP5.85□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms