RNA–Protein interactions for RNA: ENST00000534699.5

CSDE1-217, Transcript of cold shock domain containing E1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CSDE1, Length 2,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-217ENST00000534699 IL17RAQ96F46 866 aa11.91□□□□□ -0.5
CSDE1-217ENST00000534699 RNF26Q9BY78 433 aaPredicted RBP11.91□□□□□ -0.5
CSDE1-217ENST00000534699 SMARCAD1Q9H4L7 1026 aa11.91□□□□□ -0.5
CSDE1-217ENST00000534699 TUT1Q9H6E5 874 aaKnown RBP11.91□□□□□ -0.5
CSDE1-217ENST00000534699 HDAC6Q9UBN7 1215 aa11.91□□□□□ -0.5
CSDE1-217ENST00000534699 PCDHA6Q9UN73 950 aa11.91□□□□□ -0.5
CSDE1-217ENST00000534699 PCDHA8Q9Y5H6 950 aa11.91□□□□□ -0.5
CSDE1-217ENST00000534699 KAT6AQ92794 2004 aa11.9□□□□□ -0.5
CSDE1-217ENST00000534699 PFKFB3Q16875 520 aaPredicted RBP11.9□□□□□ -0.5
CSDE1-217ENST00000534699 SLC17A8Q8NDX2 589 aa11.9□□□□□ -0.5
CSDE1-217ENST00000534699 MXRA8Q9BRK3 442 aa11.9□□□□□ -0.5
CSDE1-217ENST00000534699 TTYH1Q9H313 450 aaPredicted RBP11.9□□□□□ -0.5
CSDE1-217ENST00000534699 COL1A2P08123 1366 aa11.9□□□□□ -0.5
CSDE1-217ENST00000534699 CKBP12277 381 aa11.9□□□□□ -0.5
CSDE1-217ENST00000534699 RPS6KB1P23443 525 aa11.9□□□□□ -0.5
CSDE1-217ENST00000534699 SREBF1P36956 1147 aa11.9□□□□□ -0.5
CSDE1-217ENST00000534699 CLK2P49760 499 aaKnown RBP11.9□□□□□ -0.5
CSDE1-217ENST00000534699 RSPH3Q86UC2 560 aa11.9□□□□□ -0.5
CSDE1-217ENST00000534699 IL31RAQ8NI17 732 aa11.9□□□□□ -0.5
CSDE1-217ENST00000534699 PBX4Q9BYU1 374 aa11.9□□□□□ -0.5
CSDE1-217ENST00000534699 C6orf50Q9HD87 102 aa11.9□□□□□ -0.5
CSDE1-217ENST00000534699 KCNA2P16389 499 aa11.89□□□□□ -0.51
CSDE1-217ENST00000534699 ATP2A2P16615 1042 aaKnown RBP11.89□□□□□ -0.51
CSDE1-217ENST00000534699 KCNJ6P48051 423 aa11.89□□□□□ -0.51
CSDE1-217ENST00000534699 ANAPC15P60006 121 aa11.89□□□□□ -0.51
CSDE1-217ENST00000534699 SETQ01105 290 aaPredicted RBP11.89□□□□□ -0.51
CSDE1-217ENST00000534699 SEMA3FQ13275 785 aa11.89□□□□□ -0.51
CSDE1-217ENST00000534699 ODR4Q5SWX8 454 aa11.89□□□□□ -0.51
CSDE1-217ENST00000534699 PLPPR4Q7Z2D5 763 aa11.89□□□□□ -0.51
CSDE1-217ENST00000534699 USP38Q8NB14 1042 aa11.89□□□□□ -0.51
CSDE1-217ENST00000534699 ZNF274Q96GC6 653 aaPredicted RBP11.89□□□□□ -0.51
CSDE1-217ENST00000534699 TSPYL2Q9H2G4 693 aaPredicted RBP11.89□□□□□ -0.51
CSDE1-217ENST00000534699 PPP4R2Q9NY27 417 aa11.89□□□□□ -0.51
CSDE1-217ENST00000534699 RALGAPA2Q2PPJ7 1873 aa11.89□□□□□ -0.51
CSDE1-217ENST00000534699 KLF18A0A0U1RQI7 1052 aa11.89□□□□□ -0.51
CSDE1-217ENST00000534699 STXBP3O00186 592 aa11.89□□□□□ -0.51
CSDE1-217ENST00000534699 CYP2C9P11712 490 aa11.89□□□□□ -0.51
CSDE1-217ENST00000534699 FOSL2P15408 326 aa11.89□□□□□ -0.51
CSDE1-217ENST00000534699 METAP2P50579 478 aaKnown RBP eCLIP11.89□□□□□ -0.511e-12■□□□□ 10.3
CSDE1-217ENST00000534699 NAPAP54920 295 aa11.89□□□□□ -0.51
CSDE1-217ENST00000534699 CCL23P55773 120 aa11.89□□□□□ -0.51
CSDE1-217ENST00000534699 ADAM17P78536 824 aa11.89□□□□□ -0.51
CSDE1-217ENST00000534699 IKBKEQ14164 716 aa11.89□□□□□ -0.51
CSDE1-217ENST00000534699 SDF4Q9BRK5 362 aa11.89□□□□□ -0.51
CSDE1-217ENST00000534699 ZMYND12Q9H0C1 365 aa11.89□□□□□ -0.51
CSDE1-217ENST00000534699 SLC28A3Q9HAS3 691 aa11.89□□□□□ -0.51
CSDE1-217ENST00000534699 ERAP1Q9NZ08 941 aa11.89□□□□□ -0.51
CSDE1-217ENST00000534699 SNX14Q9Y5W7 946 aa11.89□□□□□ -0.51
CSDE1-217ENST00000534699 SCN5AQ14524 2016 aa11.89□□□□□ -0.51
CSDE1-217ENST00000534699 ATG7O95352 703 aa11.88□□□□□ -0.51
CSDE1-217ENST00000534699 SCG2P13521 617 aa11.88□□□□□ -0.51
CSDE1-217ENST00000534699 IFNAR1P17181 557 aa11.88□□□□□ -0.51
CSDE1-217ENST00000534699 FGD1P98174 961 aa11.88□□□□□ -0.51
CSDE1-217ENST00000534699 AKAP17AQ02040 695 aaKnown RBP11.88□□□□□ -0.51
CSDE1-217ENST00000534699 SP2Q02086 613 aa11.88□□□□□ -0.51
CSDE1-217ENST00000534699 MTMR1Q13613 665 aa11.88□□□□□ -0.51
CSDE1-217ENST00000534699 HSDL1Q3SXM5 330 aa11.88□□□□□ -0.51
CSDE1-217ENST00000534699 CPLX2Q6PUV4 134 aaKnown RBP11.88□□□□□ -0.51
CSDE1-217ENST00000534699 Q7L0L9 218 aa11.88□□□□□ -0.51
CSDE1-217ENST00000534699 MICU3Q86XE3 530 aa11.88□□□□□ -0.51
CSDE1-217ENST00000534699 MAFAQ8NHW3 353 aaPredicted RBP11.88□□□□□ -0.51
CSDE1-217ENST00000534699 DHX38Q92620 1227 aaKnown RBP11.88□□□□□ -0.51
CSDE1-217ENST00000534699 VWCEQ96DN2 955 aa11.88□□□□□ -0.51
CSDE1-217ENST00000534699 CTAGE1Q96RT6 745 aa11.88□□□□□ -0.51
CSDE1-217ENST00000534699 ZSWIM6Q9HCJ5 1215 aa11.88□□□□□ -0.51
CSDE1-217ENST00000534699 DAXXQ9UER7 740 aaPredicted RBP11.88□□□□□ -0.51
CSDE1-217ENST00000534699 BAZ2BQ9UIF8 2168 aaKnown RBP11.88□□□□□ -0.51
CSDE1-217ENST00000534699 TRIP12Q14669 1992 aaPredicted RBP11.88□□□□□ -0.51
CSDE1-217ENST00000534699 UMODL1Q5DID0 1318 aa11.88□□□□□ -0.51
CSDE1-217ENST00000534699 MICAL3Q7RTP6 2002 aa11.88□□□□□ -0.51
CSDE1-217ENST00000534699 SMIM10L2AP0DMW4 78 aa11.88□□□□□ -0.51
CSDE1-217ENST00000534699 SMIM10L2BP0DMW5 78 aa11.88□□□□□ -0.51
CSDE1-217ENST00000534699 ACRP10323 421 aa11.88□□□□□ -0.51
CSDE1-217ENST00000534699 WWC2Q6AWC2 1192 aa11.88□□□□□ -0.51
CSDE1-217ENST00000534699 HEATR3Q7Z4Q2 680 aa11.88□□□□□ -0.51
CSDE1-217ENST00000534699 NME8Q8N427 588 aa11.88□□□□□ -0.51
CSDE1-217ENST00000534699 SEPT8Q92599 483 aa11.88□□□□□ -0.51
CSDE1-217ENST00000534699 MYL10Q9BUA6 226 aa11.88□□□□□ -0.51
CSDE1-217ENST00000534699 DDX49Q9Y6V7 483 aaKnown RBP11.88□□□□□ -0.51
CSDE1-217ENST00000534699 CIITAP33076 1130 aa11.87□□□□□ -0.51
CSDE1-217ENST00000534699 USP17L6PQ6QN14 398 aa11.87□□□□□ -0.51
CSDE1-217ENST00000534699 HERC6Q8IVU3 1022 aa11.87□□□□□ -0.51
CSDE1-217ENST00000534699 RASEFQ8IZ41 740 aa11.87□□□□□ -0.51
CSDE1-217ENST00000534699 ALG1Q9BT22 464 aa11.87□□□□□ -0.51
CSDE1-217ENST00000534699 FTOQ9C0B1 505 aaKnown RBP eCLIP11.87□□□□□ -0.51
CSDE1-217ENST00000534699 FAM217BQ9NTX9 383 aaPredicted RBP11.87□□□□□ -0.51
CSDE1-217ENST00000534699 BRPF3Q9ULD4 1205 aa11.87□□□□□ -0.51
CSDE1-217ENST00000534699 MBLAC1A4D2B0 266 aaPredicted RBP11.87□□□□□ -0.51
CSDE1-217ENST00000534699 SMCO2A6NFE2 343 aa11.87□□□□□ -0.51
CSDE1-217ENST00000534699 MEIS1O00470 390 aa11.87□□□□□ -0.51
CSDE1-217ENST00000534699 CEP55Q53EZ4 464 aa11.87□□□□□ -0.51
CSDE1-217ENST00000534699 TRAF7Q6Q0C0 670 aa11.87□□□□□ -0.51
CSDE1-217ENST00000534699 MOXD1Q6UVY6 613 aa11.87□□□□□ -0.51
CSDE1-217ENST00000534699 RUFY3Q7L099 469 aa11.87□□□□□ -0.51
CSDE1-217ENST00000534699 ATP6V0A1Q93050 837 aa11.87□□□□□ -0.51
CSDE1-217ENST00000534699 JAKMIP1Q96N16 626 aaKnown RBP11.87□□□□□ -0.51
CSDE1-217ENST00000534699 NAP1L4Q99733 375 aaKnown RBP11.87□□□□□ -0.51
CSDE1-217ENST00000534699 ANO3Q9BYT9 981 aa11.87□□□□□ -0.51
CSDE1-217ENST00000534699 TBC1D22BQ9NU19 505 aa11.87□□□□□ -0.51
CSDE1-217ENST00000534699 SIP14410 1827 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms