RNA–Protein interactions for RNA: ENST00000523488.5

CSMD1-213, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 3,714 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-213ENST00000523488 PSMB7Q99436 277 aa9.2□□□□□ -0.94
CSMD1-213ENST00000523488 TSC22D3Q99576 134 aa9.2□□□□□ -0.94
CSMD1-213ENST00000523488 GORASP1Q9BQQ3 440 aa9.2□□□□□ -0.94
CSMD1-213ENST00000523488 KBTBD4Q9NVX7 518 aa9.2□□□□□ -0.94
CSMD1-213ENST00000523488 ADAM22Q9P0K1 906 aa9.2□□□□□ -0.94
CSMD1-213ENST00000523488 MAGEB2O15479 319 aa9.2□□□□□ -0.94
CSMD1-213ENST00000523488 TACC1O75410 805 aa9.2□□□□□ -0.94
CSMD1-213ENST00000523488 TCEA3O75764 348 aa9.2□□□□□ -0.94
CSMD1-213ENST00000523488 FLOT1O75955 427 aa9.2□□□□□ -0.94
CSMD1-213ENST00000523488 PARP1P09874 1014 aaKnown RBP9.2□□□□□ -0.94
CSMD1-213ENST00000523488 CDC25AP30304 524 aa9.2□□□□□ -0.94
CSMD1-213ENST00000523488 UBXN1Q04323 297 aa9.2□□□□□ -0.94
CSMD1-213ENST00000523488 HLTFQ14527 1009 aaKnown RBP eCLIP9.2□□□□□ -0.94
CSMD1-213ENST00000523488 IL17AQ16552 155 aa9.2□□□□□ -0.94
CSMD1-213ENST00000523488 CWF19L2Q2TBE0 894 aaKnown RBP9.2□□□□□ -0.94
CSMD1-213ENST00000523488 RNF43Q68DV7 783 aa9.2□□□□□ -0.94
CSMD1-213ENST00000523488 ZNF513Q8N8E2 541 aaPredicted RBP9.2□□□□□ -0.94
CSMD1-213ENST00000523488 USP38Q8NB14 1042 aa9.2□□□□□ -0.94
CSMD1-213ENST00000523488 CHMP6Q96FZ7 201 aa9.2□□□□□ -0.94
CSMD1-213ENST00000523488 XPO6Q96QU8 1125 aaKnown RBP9.2□□□□□ -0.94
CSMD1-213ENST00000523488 TAB2Q9NYJ8 693 aa9.2□□□□□ -0.94
CSMD1-213ENST00000523488 USO1O60763 962 aaKnown RBP9.19□□□□□ -0.94
CSMD1-213ENST00000523488 INHBCP55103 352 aa9.19□□□□□ -0.94
CSMD1-213ENST00000523488 HAND2P61296 217 aa9.19□□□□□ -0.94
CSMD1-213ENST00000523488 SF3A3Q12874 501 aaKnown RBP eCLIP9.19□□□□□ -0.94
CSMD1-213ENST00000523488 NAB2Q15742 525 aa9.19□□□□□ -0.94
CSMD1-213ENST00000523488 FOXB2Q5VYV0 432 aa9.19□□□□□ -0.94
CSMD1-213ENST00000523488 UTP4Q969X6 686 aaKnown RBP9.19□□□□□ -0.94
CSMD1-213ENST00000523488 DHTKD1Q96HY7 919 aaPredicted RBP9.19□□□□□ -0.94
CSMD1-213ENST00000523488 FAM192AQ9GZU8 254 aa9.19□□□□□ -0.94
CSMD1-213ENST00000523488 ZWILCHQ9H900 591 aa9.19□□□□□ -0.94
CSMD1-213ENST00000523488 RMND1Q9NWS8 449 aa9.19□□□□□ -0.94
CSMD1-213ENST00000523488 SART1O43290 800 aaKnown RBP9.19□□□□□ -0.94
CSMD1-213ENST00000523488 KCNQ3O43525 872 aa9.19□□□□□ -0.94
CSMD1-213ENST00000523488 CDC25CP30307 473 aa9.19□□□□□ -0.94
CSMD1-213ENST00000523488 ALDH3A1P30838 453 aa9.19□□□□□ -0.94
CSMD1-213ENST00000523488 PABPC4Q13310 644 aaKnown RBP eCLIP9.19□□□□□ -0.94
CSMD1-213ENST00000523488 NAALADL2Q58DX5 795 aa9.19□□□□□ -0.94
CSMD1-213ENST00000523488 TBC1D10CQ8IV04 446 aa9.19□□□□□ -0.94
CSMD1-213ENST00000523488 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP9.19□□□□□ -0.94
CSMD1-213ENST00000523488 LZICQ8WZA0 190 aa9.19□□□□□ -0.94
CSMD1-213ENST00000523488 EZH1Q92800 747 aaPredicted RBP9.19□□□□□ -0.94
CSMD1-213ENST00000523488 RNF26Q9BY78 433 aaPredicted RBP9.19□□□□□ -0.94
CSMD1-213ENST00000523488 EPB41L4AQ9HCS5 686 aaPredicted RBP9.19□□□□□ -0.94
CSMD1-213ENST00000523488 ZNF510Q9Y2H8 683 aa9.19□□□□□ -0.94
CSMD1-213ENST00000523488 PCDHA13Q9Y5I0 950 aa9.19□□□□□ -0.94
CSMD1-213ENST00000523488 F8VZ95 297 aa9.19□□□□□ -0.94
CSMD1-213ENST00000523488 ALAS1P13196 640 aa9.19□□□□□ -0.94
CSMD1-213ENST00000523488 RANBP1P43487 201 aa9.19□□□□□ -0.94
CSMD1-213ENST00000523488 ERVK-9P63128 1117 aa9.19□□□□□ -0.94
CSMD1-213ENST00000523488 AIMP1Q12904 312 aaKnown RBP9.19□□□□□ -0.94
CSMD1-213ENST00000523488 CCDC96Q2M329 555 aa9.19□□□□□ -0.94
CSMD1-213ENST00000523488 CCDC57Q2TAC2 916 aa9.19□□□□□ -0.94
CSMD1-213ENST00000523488 RUFY4Q6ZNE9 571 aa9.19□□□□□ -0.94
CSMD1-213ENST00000523488 COL23A1Q86Y22 540 aaPredicted RBP9.19□□□□□ -0.94
CSMD1-213ENST00000523488 LRRC43Q8N309 656 aa9.19□□□□□ -0.94
CSMD1-213ENST00000523488 FAM167BQ9BTA0 163 aa9.19□□□□□ -0.94
CSMD1-213ENST00000523488 PANK4Q9NVE7 773 aa9.19□□□□□ -0.94
CSMD1-213ENST00000523488 PCDHB6Q9Y5E3 794 aa9.19□□□□□ -0.94
CSMD1-213ENST00000523488 SLIT2O94813 1529 aa9.19□□□□□ -0.94
CSMD1-213ENST00000523488 FLT1P17948 1338 aa9.19□□□□□ -0.94
CSMD1-213ENST00000523488 A0A0A6YYK5 440 aaPredicted RBP9.18□□□□□ -0.94
CSMD1-213ENST00000523488 NUTM2BA6NNL0 878 aaPredicted RBP9.18□□□□□ -0.94
CSMD1-213ENST00000523488 NUTM2EB1AL46 878 aaPredicted RBP9.18□□□□□ -0.94
CSMD1-213ENST00000523488 GCOM1H8Y6P7 765 aaPredicted RBP9.18□□□□□ -0.94
CSMD1-213ENST00000523488 BACH1O14867 736 aa9.18□□□□□ -0.94
CSMD1-213ENST00000523488 DIAPH2O60879 1101 aa9.18□□□□□ -0.94
CSMD1-213ENST00000523488 MYZAPP0CAP1 466 aa9.18□□□□□ -0.94
CSMD1-213ENST00000523488 SETSIPP0DME0 302 aa9.18□□□□□ -0.94
CSMD1-213ENST00000523488 SLC18A1P54219 525 aa9.18□□□□□ -0.94
CSMD1-213ENST00000523488 UBE3CQ15386 1083 aa9.18□□□□□ -0.94
CSMD1-213ENST00000523488 ARMC3Q5W041 872 aa9.18□□□□□ -0.94
CSMD1-213ENST00000523488 USP49Q70CQ1 688 aa9.18□□□□□ -0.94
CSMD1-213ENST00000523488 TBC1D1Q86TI0 1168 aaPredicted RBP9.18□□□□□ -0.94
CSMD1-213ENST00000523488 CRACR2BQ8N4Y2 399 aaPredicted RBP9.18□□□□□ -0.94
CSMD1-213ENST00000523488 RBM41Q96IZ5 413 aaKnown RBP9.18□□□□□ -0.94
CSMD1-213ENST00000523488 KRT23Q9C075 422 aa9.18□□□□□ -0.94
CSMD1-213ENST00000523488 LRMDAQ9H2I8 198 aa9.18□□□□□ -0.94
CSMD1-213ENST00000523488 TFR2Q9UP52 801 aa9.18□□□□□ -0.94
CSMD1-213ENST00000523488 PLAAQ9Y263 795 aa9.18□□□□□ -0.94
CSMD1-213ENST00000523488 LOXHD1Q8IVV2 1947 aa9.18□□□□□ -0.94
CSMD1-213ENST00000523488 ITGB4P16144 1822 aa9.18□□□□□ -0.94
CSMD1-213ENST00000523488 CYP27B1O15528 508 aa9.18□□□□□ -0.94
CSMD1-213ENST00000523488 MAP3K13O43283 966 aa9.18□□□□□ -0.94
CSMD1-213ENST00000523488 GSTA2P09210 222 aa9.18□□□□□ -0.94
CSMD1-213ENST00000523488 IL15P40933 162 aaPredicted RBP9.18□□□□□ -0.94
CSMD1-213ENST00000523488 NT5C2P49902 561 aa9.18□□□□□ -0.94
CSMD1-213ENST00000523488 DNA2P51530 1060 aa9.18□□□□□ -0.94
CSMD1-213ENST00000523488 NPEPPSP55786 919 aa9.18□□□□□ -0.94
CSMD1-213ENST00000523488 PPARAQ07869 468 aa9.18□□□□□ -0.94
CSMD1-213ENST00000523488 SEC23AQ15436 765 aa9.18□□□□□ -0.94
CSMD1-213ENST00000523488 ANKRD20A2Q5SQ80 823 aa9.18□□□□□ -0.94
CSMD1-213ENST00000523488 ANKRD20A1Q5TYW2 823 aa9.18□□□□□ -0.94
CSMD1-213ENST00000523488 ANKRD20A3Q5VUR7 823 aa9.18□□□□□ -0.94
CSMD1-213ENST00000523488 FAM91A1Q658Y4 838 aa9.18□□□□□ -0.94
CSMD1-213ENST00000523488 VGLL2Q8N8G2 317 aa9.18□□□□□ -0.94
CSMD1-213ENST00000523488 FAM81AQ8TBF8 368 aa9.18□□□□□ -0.94
CSMD1-213ENST00000523488 ASAP3Q8TDY4 903 aa9.18□□□□□ -0.94
CSMD1-213ENST00000523488 GATA6Q92908 595 aa9.18□□□□□ -0.94
CSMD1-213ENST00000523488 AIFM3Q96NN9 605 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms