RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 NOP56O00567 594 aaKnown RBP12.07□□□□□ -0.48
LIMCH1-217ENST00000512946 KCNA3P22001 575 aa12.07□□□□□ -0.48
LIMCH1-217ENST00000512946 HIC1Q14526 733 aa12.07□□□□□ -0.48
LIMCH1-217ENST00000512946 KMT5BQ4FZB7 885 aa12.07□□□□□ -0.48
LIMCH1-217ENST00000512946 FAM173BQ6P4H8 233 aa12.07□□□□□ -0.48
LIMCH1-217ENST00000512946 DNAJC9Q8WXX5 260 aa12.07□□□□□ -0.48
LIMCH1-217ENST00000512946 CNOT6LQ96LI5 555 aaKnown RBP12.07□□□□□ -0.48
LIMCH1-217ENST00000512946 USP28Q96RU2 1077 aa12.07□□□□□ -0.48
LIMCH1-217ENST00000512946 GOLGA8JA6NMD2 632 aa12.07□□□□□ -0.48
LIMCH1-217ENST00000512946 SNUPNO95149 360 aaKnown RBP12.07□□□□□ -0.48
LIMCH1-217ENST00000512946 CAPN12Q6ZSI9 719 aa12.07□□□□□ -0.48
LIMCH1-217ENST00000512946 TTLL11Q8NHH1 800 aa12.07□□□□□ -0.48
LIMCH1-217ENST00000512946 A0A0G2JND7 137 aa12.06□□□□□ -0.48
LIMCH1-217ENST00000512946 CAPN9O14815 690 aa12.06□□□□□ -0.48
LIMCH1-217ENST00000512946 PPP1R37O75864 691 aa12.06□□□□□ -0.48
LIMCH1-217ENST00000512946 MBD4O95243 580 aa12.06□□□□□ -0.48
LIMCH1-217ENST00000512946 KRT7P08729 469 aa12.06□□□□□ -0.48
LIMCH1-217ENST00000512946 KCNJ6P48051 423 aa12.06□□□□□ -0.48
LIMCH1-217ENST00000512946 FKBP3Q00688 224 aaKnown RBP12.06□□□□□ -0.48
LIMCH1-217ENST00000512946 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.06□□□□□ -0.48
LIMCH1-217ENST00000512946 EFTUD2Q15029 972 aaKnown RBP eCLIP12.06□□□□□ -0.48
LIMCH1-217ENST00000512946 EPM2AIP1Q7L775 607 aaPredicted RBP12.06□□□□□ -0.48
LIMCH1-217ENST00000512946 GPT2Q8TD30 523 aa12.06□□□□□ -0.48
LIMCH1-217ENST00000512946 CLMNQ96JQ2 1002 aa12.06□□□□□ -0.48
LIMCH1-217ENST00000512946 TUBA8Q9NY65 449 aaPredicted RBP12.06□□□□□ -0.48
LIMCH1-217ENST00000512946 CHPF2Q9P2E5 772 aa12.06□□□□□ -0.48
LIMCH1-217ENST00000512946 LZTS1Q9Y250 596 aa12.06□□□□□ -0.48
LIMCH1-217ENST00000512946 TTLL3Q9Y4R7 772 aa12.06□□□□□ -0.48
LIMCH1-217ENST00000512946 ZNF839A8K0R7 811 aa12.06□□□□□ -0.48
LIMCH1-217ENST00000512946 DDIT3P35638 169 aa12.06□□□□□ -0.48
LIMCH1-217ENST00000512946 NT5C2P49902 561 aa12.06□□□□□ -0.48
LIMCH1-217ENST00000512946 MESDQ14696 234 aa12.06□□□□□ -0.48
LIMCH1-217ENST00000512946 SLC39A14Q15043 492 aa12.06□□□□□ -0.48
LIMCH1-217ENST00000512946 TRADDQ15628 312 aa12.06□□□□□ -0.48
LIMCH1-217ENST00000512946 CEP78Q5JTW2 689 aa12.06□□□□□ -0.48
LIMCH1-217ENST00000512946 KAZNQ674X7 775 aa12.06□□□□□ -0.48
LIMCH1-217ENST00000512946 RPRD2Q5VT52 1461 aaKnown RBP12.06□□□□□ -0.48
LIMCH1-217ENST00000512946 MEIS1O00470 390 aa12.06□□□□□ -0.48
LIMCH1-217ENST00000512946 ABCE1P61221 599 aaKnown RBP12.06□□□□□ -0.48
LIMCH1-217ENST00000512946 RABGAP1LQ5R372 815 aa12.06□□□□□ -0.48
LIMCH1-217ENST00000512946 GPBP1Q86WP2 473 aa12.06□□□□□ -0.48
LIMCH1-217ENST00000512946 RFX6Q8HWS3 928 aa12.06□□□□□ -0.48
LIMCH1-217ENST00000512946 MCUQ8NE86 351 aa12.06□□□□□ -0.48
LIMCH1-217ENST00000512946 OTUB1Q96FW1 271 aaPredicted RBP12.06□□□□□ -0.48
LIMCH1-217ENST00000512946 OLFM1Q99784 485 aa12.06□□□□□ -0.48
LIMCH1-217ENST00000512946 TMEM245Q9H330 911 aa12.06□□□□□ -0.48
LIMCH1-217ENST00000512946 RWDD2AQ9UIY3 292 aa12.06□□□□□ -0.48
LIMCH1-217ENST00000512946 PCDHA7Q9UN72 937 aa12.06□□□□□ -0.48
LIMCH1-217ENST00000512946 FAM135BQ49AJ0 1406 aa12.06□□□□□ -0.48
LIMCH1-217ENST00000512946 hCG_2014768A0A024R1R8 64 aa12.06□□□□□ -0.48
LIMCH1-217ENST00000512946 GOLGA8IPA6NC78 632 aa12.06□□□□□ -0.48
LIMCH1-217ENST00000512946 M0R3G1 203 aa12.06□□□□□ -0.48
LIMCH1-217ENST00000512946 OR52Z1P0C646 297 aa12.06□□□□□ -0.48
LIMCH1-217ENST00000512946 PSMA3P25788 255 aa12.06□□□□□ -0.48
LIMCH1-217ENST00000512946 PAPOLAP51003 745 aaKnown RBP12.06□□□□□ -0.48
LIMCH1-217ENST00000512946 AKAP4Q5JQC9 854 aa12.06□□□□□ -0.48
LIMCH1-217ENST00000512946 PLEKHM3Q6ZWE6 761 aa12.06□□□□□ -0.48
LIMCH1-217ENST00000512946 COPS6Q7L5N1 327 aa12.06□□□□□ -0.48
LIMCH1-217ENST00000512946 GAS2L3Q86XJ1 694 aa12.06□□□□□ -0.48
LIMCH1-217ENST00000512946 PRPF18Q99633 342 aaKnown RBP12.06□□□□□ -0.48
LIMCH1-217ENST00000512946 EPN3Q9H201 632 aa12.06□□□□□ -0.48
LIMCH1-217ENST00000512946 SLITRK6Q9H5Y7 841 aa12.06□□□□□ -0.48
LIMCH1-217ENST00000512946 AZI2Q9H6S1 392 aa12.06□□□□□ -0.48
LIMCH1-217ENST00000512946 PA2G4Q9UQ80 394 aaKnown RBP12.06□□□□□ -0.48
LIMCH1-217ENST00000512946 ENO4A6NNW6 628 aa12.05□□□□□ -0.48
LIMCH1-217ENST00000512946 WASLO00401 505 aaPredicted RBP12.05□□□□□ -0.48
LIMCH1-217ENST00000512946 PLS3P13797 630 aa12.05□□□□□ -0.48
LIMCH1-217ENST00000512946 C2orf54Q08AI8 447 aa12.05□□□□□ -0.48
LIMCH1-217ENST00000512946 BEND6Q5SZJ8 279 aaPredicted RBP12.05□□□□□ -0.48
LIMCH1-217ENST00000512946 SCYL2Q6P3W7 929 aa12.05□□□□□ -0.48
LIMCH1-217ENST00000512946 ZBTB8OSQ8IWT0 167 aa12.05□□□□□ -0.48
LIMCH1-217ENST00000512946 FAM178BQ8IXR5 827 aa12.05□□□□□ -0.48
LIMCH1-217ENST00000512946 OPTNQ96CV9 577 aa12.05□□□□□ -0.48
LIMCH1-217ENST00000512946 TESK2Q96S53 571 aa12.05□□□□□ -0.48
LIMCH1-217ENST00000512946 LSG1Q9H089 658 aaKnown RBP12.05□□□□□ -0.48
LIMCH1-217ENST00000512946 ZSWIM6Q9HCJ5 1215 aa12.05□□□□□ -0.48
LIMCH1-217ENST00000512946 AATFQ9NY61 560 aaKnown RBP eCLIP12.05□□□□□ -0.48
LIMCH1-217ENST00000512946 ZBTB21Q9ULJ3 1066 aa12.05□□□□□ -0.48
LIMCH1-217ENST00000512946 NUP160Q12769 1436 aa12.05□□□□□ -0.48
LIMCH1-217ENST00000512946 RASA4BC9J798 803 aa12.05□□□□□ -0.48
LIMCH1-217ENST00000512946 RASA4O43374 803 aa12.05□□□□□ -0.48
LIMCH1-217ENST00000512946 PPARDQ03181 441 aa12.05□□□□□ -0.48
LIMCH1-217ENST00000512946 BYSLQ13895 437 aaKnown RBP12.05□□□□□ -0.48
LIMCH1-217ENST00000512946 APOA5Q6Q788 366 aa12.05□□□□□ -0.48
LIMCH1-217ENST00000512946 LRIG3Q6UXM1 1119 aa12.05□□□□□ -0.48
LIMCH1-217ENST00000512946 ZNF555Q8NEP9 628 aa12.05□□□□□ -0.48
LIMCH1-217ENST00000512946 ST13P5Q8NFI4 369 aaPredicted RBP12.05□□□□□ -0.48
LIMCH1-217ENST00000512946 GDAP1Q8TB36 358 aa12.05□□□□□ -0.48
LIMCH1-217ENST00000512946 EYA3Q99504 573 aa12.05□□□□□ -0.48
LIMCH1-217ENST00000512946 GCOM2Q9BZD3 368 aaPredicted RBP12.05□□□□□ -0.48
LIMCH1-217ENST00000512946 PANK4Q9NVE7 773 aa12.05□□□□□ -0.48
LIMCH1-217ENST00000512946 EYA2O00167 538 aa12.05□□□□□ -0.48
LIMCH1-217ENST00000512946 ZBTB24O43167 697 aaPredicted RBP12.05□□□□□ -0.48
LIMCH1-217ENST00000512946 PAMP19021 973 aa12.05□□□□□ -0.48
LIMCH1-217ENST00000512946 P2RX5Q93086 422 aa12.05□□□□□ -0.48
LIMCH1-217ENST00000512946 KLHL31Q9H511 634 aa12.05□□□□□ -0.48
LIMCH1-217ENST00000512946 EPS8L2Q9H6S3 715 aa12.05□□□□□ -0.48
LIMCH1-217ENST00000512946 RNF123Q5XPI4 1314 aa12.05□□□□□ -0.48
LIMCH1-217ENST00000512946 UHRF1BP1Q6BDS2 1440 aa12.05□□□□□ -0.48
LIMCH1-217ENST00000512946 TIAM1Q13009 1591 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms