RNA–Protein interactions for RNA: ENST00000506018.5

NR1I3-222, Transcript of nuclear receptor subfamily 1 group I member 3, human

TSL 1 (best)

Gene NR1I3, Length 1,380 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NR1I3-222	ENST00000506018	RAB11FIP4	Q86YS3	637 aa		11.96	□□□□□ -0.49
NR1I3-222	ENST00000506018	CMTR1	Q8N1G2	835 aa	Known RBP	11.96	□□□□□ -0.49
NR1I3-222	ENST00000506018	ZNF713	Q8N859	430 aa	Predicted RBP	11.96	□□□□□ -0.49
NR1I3-222	ENST00000506018	PPP1R13L	Q8WUF5	828 aa		11.96	□□□□□ -0.49
NR1I3-222	ENST00000506018	SENP7	Q9BQF6	1050 aa		11.96	□□□□□ -0.49
NR1I3-222	ENST00000506018	GLT8D2	Q9H1C3	349 aa		11.96	□□□□□ -0.49
NR1I3-222	ENST00000506018	TUT1	Q9H6E5	874 aa	Known RBP	11.96	□□□□□ -0.49
NR1I3-222	ENST00000506018	RTEL1	Q9NZ71	1219 aa		11.96	□□□□□ -0.49
NR1I3-222	ENST00000506018	NAP1L2	Q9ULW6	460 aa	Predicted RBP	11.96	□□□□□ -0.49
NR1I3-222	ENST00000506018	PCDHA11	Q9Y5I1	949 aa		11.96	□□□□□ -0.49
NR1I3-222	ENST00000506018	TET1	Q8NFU7	2136 aa		11.96	□□□□□ -0.5
NR1I3-222	ENST00000506018	C17orf102	A2RUQ5	167 aa		11.95	□□□□□ -0.5
NR1I3-222	ENST00000506018	EFCAB14	O75071	495 aa		11.95	□□□□□ -0.5
NR1I3-222	ENST00000506018	PBX2	P40425	430 aa		11.95	□□□□□ -0.5
NR1I3-222	ENST00000506018	NAPA	P54920	295 aa		11.95	□□□□□ -0.5
NR1I3-222	ENST00000506018	MRPS9	P82933	396 aa	Known RBP	11.95	□□□□□ -0.5
NR1I3-222	ENST00000506018	SP2	Q02086	613 aa		11.95	□□□□□ -0.5
NR1I3-222	ENST00000506018	RBL2	Q08999	1139 aa		11.95	□□□□□ -0.5
NR1I3-222	ENST00000506018	GRIN2C	Q14957	1233 aa		11.95	□□□□□ -0.5
NR1I3-222	ENST00000506018	PPP1R18	Q6NYC8	613 aa		11.95	□□□□□ -0.5
NR1I3-222	ENST00000506018	CYFIP1	Q7L576	1253 aa		11.95	□□□□□ -0.5
NR1I3-222	ENST00000506018	PHF6	Q8IWS0	365 aa	Known RBP eCLIP	11.95	□□□□□ -0.5
NR1I3-222	ENST00000506018	PHOSPHO2	Q8TCD6	241 aa		11.95	□□□□□ -0.5
NR1I3-222	ENST00000506018	GPRASP2	Q96D09	838 aa		11.95	□□□□□ -0.5
NR1I3-222	ENST00000506018	ZFP91	Q96JP5	570 aa	Predicted RBP	11.95	□□□□□ -0.5
NR1I3-222	ENST00000506018	FARP1	Q9Y4F1	1045 aa	Predicted RBP	11.95	□□□□□ -0.5
NR1I3-222	ENST00000506018	EMSY	Q7Z589	1322 aa		11.95	□□□□□ -0.5
NR1I3-222	ENST00000506018	KLF18	A0A0U1RQI7	1052 aa		11.94	□□□□□ -0.5
NR1I3-222	ENST00000506018	GOLGA8A	A7E2F4	631 aa		11.94	□□□□□ -0.5
NR1I3-222	ENST00000506018	GOLGA8B	A8MQT2	603 aa		11.94	□□□□□ -0.5
NR1I3-222	ENST00000506018	DLL1	O00548	723 aa		11.94	□□□□□ -0.5
NR1I3-222	ENST00000506018	MAFG	O15525	162 aa		11.94	□□□□□ -0.5
NR1I3-222	ENST00000506018	EIF5B	O60841	1220 aa	Known RBP	11.94	□□□□□ -0.5
NR1I3-222	ENST00000506018	LGALS2	P05162	132 aa		11.94	□□□□□ -0.5
NR1I3-222	ENST00000506018	CKB	P12277	381 aa		11.94	□□□□□ -0.5
NR1I3-222	ENST00000506018	PSMA5	P28066	241 aa		11.94	□□□□□ -0.5
NR1I3-222	ENST00000506018	EXOSC10	Q01780	885 aa	Known RBP	11.94	□□□□□ -0.5
NR1I3-222	ENST00000506018	PPP2R2D	Q66LE6	453 aa		11.94	□□□□□ -0.5
NR1I3-222	ENST00000506018	BLOC1S2	Q6QNY1	142 aa		11.94	□□□□□ -0.5
NR1I3-222	ENST00000506018	SKAP1	Q86WV1	359 aa		11.94	□□□□□ -0.5
NR1I3-222	ENST00000506018	NKX2-4	Q9H2Z4	354 aa		11.94	□□□□□ -0.5
NR1I3-222	ENST00000506018	CNTNAP5	Q8WYK1	1306 aa		11.94	□□□□□ -0.5
NR1I3-222	ENST00000506018	FOS	P01100	380 aa	Predicted RBP	11.93	□□□□□ -0.5
NR1I3-222	ENST00000506018	MTMR1	Q13613	665 aa		11.93	□□□□□ -0.5
NR1I3-222	ENST00000506018	CNKSR3	Q6P9H4	555 aa		11.93	□□□□□ -0.5
NR1I3-222	ENST00000506018	RASEF	Q8IZ41	740 aa		11.93	□□□□□ -0.5
NR1I3-222	ENST00000506018	CCDC12	Q8WUD4	166 aa	Predicted RBP	11.93	□□□□□ -0.5
NR1I3-222	ENST00000506018	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	11.93	□□□□□ -0.5	4e-7	■■■■■ 40.8
NR1I3-222	ENST00000506018	TNPO1	Q92973	898 aa	Known RBP	11.93	□□□□□ -0.5
NR1I3-222	ENST00000506018	ATP6V0A1	Q93050	837 aa		11.93	□□□□□ -0.5
NR1I3-222	ENST00000506018	C16orf70	Q9BSU1	422 aa		11.93	□□□□□ -0.5
NR1I3-222	ENST00000506018	PCDHA6	Q9UN73	950 aa		11.93	□□□□□ -0.5
NR1I3-222	ENST00000506018	PCDHA8	Q9Y5H6	950 aa		11.93	□□□□□ -0.5
NR1I3-222	ENST00000506018	hCG_1642624	A0A1W2PR95	340 aa		11.92	□□□□□ -0.5
NR1I3-222	ENST00000506018	EPB41L2	O43491	1005 aa	Known RBP	11.92	□□□□□ -0.5
NR1I3-222	ENST00000506018	CAND2	O75155	1236 aa		11.92	□□□□□ -0.5
NR1I3-222	ENST00000506018	METAP2	P50579	478 aa	Known RBP eCLIP	11.92	□□□□□ -0.5
NR1I3-222	ENST00000506018	ADCY7	P51828	1080 aa		11.92	□□□□□ -0.5
NR1I3-222	ENST00000506018	RABGGTB	P53611	331 aa		11.92	□□□□□ -0.5
NR1I3-222	ENST00000506018	AKAP17A	Q02040	695 aa	Known RBP	11.92	□□□□□ -0.5
NR1I3-222	ENST00000506018	SP4	Q02446	784 aa		11.92	□□□□□ -0.5
NR1I3-222	ENST00000506018	IKBKE	Q14164	716 aa		11.92	□□□□□ -0.5
NR1I3-222	ENST00000506018	UBE2S	Q16763	222 aa		11.92	□□□□□ -0.5
NR1I3-222	ENST00000506018	ADCK5	Q3MIX3	580 aa		11.92	□□□□□ -0.5
NR1I3-222	ENST00000506018	TCEANC2	Q96MN5	208 aa		11.92	□□□□□ -0.5
NR1I3-222	ENST00000506018	JAKMIP1	Q96N16	626 aa	Known RBP	11.92	□□□□□ -0.5
NR1I3-222	ENST00000506018	GPR20	Q99678	358 aa		11.92	□□□□□ -0.5
NR1I3-222	ENST00000506018	PRDM12	Q9H4Q4	367 aa		11.92	□□□□□ -0.5
NR1I3-222	ENST00000506018	RIC8A	Q9NPQ8	531 aa		11.92	□□□□□ -0.5
NR1I3-222	ENST00000506018	CDH23	Q9H251	3354 aa		11.92	□□□□□ -0.5
NR1I3-222	ENST00000506018	ABHD14A-ACY1	A0A1B0GW23	586 aa		11.92	□□□□□ -0.5
NR1I3-222	ENST00000506018	RSPH10B2	B2RC85	870 aa		11.92	□□□□□ -0.5
NR1I3-222	ENST00000506018	CXCL10	P02778	98 aa		11.92	□□□□□ -0.5
NR1I3-222	ENST00000506018	RSPH10B	P0C881	870 aa		11.92	□□□□□ -0.5
NR1I3-222	ENST00000506018	SMIM10L2A	P0DMW4	78 aa		11.92	□□□□□ -0.5
NR1I3-222	ENST00000506018	SMIM10L2B	P0DMW5	78 aa		11.92	□□□□□ -0.5
NR1I3-222	ENST00000506018	HSPA4	P34932	840 aa		11.92	□□□□□ -0.5
NR1I3-222	ENST00000506018	THPO	P40225	353 aa		11.92	□□□□□ -0.5
NR1I3-222	ENST00000506018	SEMA3F	Q13275	785 aa		11.92	□□□□□ -0.5
NR1I3-222	ENST00000506018	AP3B2	Q13367	1082 aa		11.92	□□□□□ -0.5
NR1I3-222	ENST00000506018	UTP14C	Q5TAP6	766 aa	Known RBP	11.92	□□□□□ -0.5
NR1I3-222	ENST00000506018	WWC2	Q6AWC2	1192 aa		11.92	□□□□□ -0.5
NR1I3-222	ENST00000506018	MCTP2	Q6DN12	878 aa		11.92	□□□□□ -0.5
NR1I3-222	ENST00000506018		Q6ZUG5	572 aa		11.92	□□□□□ -0.5
NR1I3-222	ENST00000506018	SERINC5	Q86VE9	423 aa		11.92	□□□□□ -0.5
NR1I3-222	ENST00000506018	HERC6	Q8IVU3	1022 aa		11.92	□□□□□ -0.5
NR1I3-222	ENST00000506018	SEPT1	Q8WYJ6	367 aa		11.92	□□□□□ -0.5
NR1I3-222	ENST00000506018	SPOCK2	Q92563	424 aa		11.92	□□□□□ -0.5
NR1I3-222	ENST00000506018	DHX38	Q92620	1227 aa	Known RBP	11.92	□□□□□ -0.5
NR1I3-222	ENST00000506018	SDF4	Q9BRK5	362 aa		11.92	□□□□□ -0.5
NR1I3-222	ENST00000506018	ZBED2	Q9BTP6	218 aa		11.92	□□□□□ -0.5
NR1I3-222	ENST00000506018	TSPYL2	Q9H2G4	693 aa	Predicted RBP	11.92	□□□□□ -0.5
NR1I3-222	ENST00000506018	BARHL2	Q9NY43	387 aa		11.92	□□□□□ -0.5
NR1I3-222	ENST00000506018	BRPF3	Q9ULD4	1205 aa		11.92	□□□□□ -0.5
NR1I3-222	ENST00000506018	YBX2	Q9Y2T7	364 aa	Known RBP	11.92	□□□□□ -0.5
NR1I3-222	ENST00000506018		V9GY48	417 aa	Predicted RBP	11.92	□□□□□ -0.5
NR1I3-222	ENST00000506018	NRCAM	Q92823	1304 aa		11.91	□□□□□ -0.5
NR1I3-222	ENST00000506018	MICAL3	Q7RTP6	2002 aa		11.91	□□□□□ -0.5
NR1I3-222	ENST00000506018	SMCO2	A6NFE2	343 aa		11.91	□□□□□ -0.5
NR1I3-222	ENST00000506018	TLL1	O43897	1013 aa		11.91	□□□□□ -0.5

Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms