RNA–Protein interactions for RNA: ENST00000492280.5

HMGN1-220, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 5

Gene HMGN1, Length 2,707 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-220ENST00000492280 H3BQF6 201 aa13.8□□□□□ -0.2
HMGN1-220ENST00000492280 OPLAHO14841 1288 aa13.8□□□□□ -0.2
HMGN1-220ENST00000492280 NCK2O43639 380 aa13.8□□□□□ -0.2
HMGN1-220ENST00000492280 CYP11B2P19099 503 aa13.8□□□□□ -0.2
HMGN1-220ENST00000492280 MAN2A1Q16706 1144 aa13.8□□□□□ -0.2
HMGN1-220ENST00000492280 ARSHQ5FYA8 562 aa13.8□□□□□ -0.2
HMGN1-220ENST00000492280 MIGA2Q7L4E1 593 aa13.8□□□□□ -0.2
HMGN1-220ENST00000492280 RGL1Q9NZL6 768 aa13.8□□□□□ -0.2
HMGN1-220ENST00000492280 PVALEFA0A1B0GWK0 134 aa13.8□□□□□ -0.2
HMGN1-220ENST00000492280 PDE2AO00408 941 aaPredicted RBP13.8□□□□□ -0.2
HMGN1-220ENST00000492280 PLSCR1O15162 318 aa13.8□□□□□ -0.2
HMGN1-220ENST00000492280 PPIP5K2O43314 1243 aa13.8□□□□□ -0.2
HMGN1-220ENST00000492280 N4BP1O75113 896 aaKnown RBP13.8□□□□□ -0.2
HMGN1-220ENST00000492280 CYLC1P35663 651 aaPredicted RBP13.8□□□□□ -0.2
HMGN1-220ENST00000492280 KIF11P52732 1056 aa13.8□□□□□ -0.2
HMGN1-220ENST00000492280 KCNA1Q09470 495 aa13.8□□□□□ -0.2
HMGN1-220ENST00000492280 KCNMA1Q12791 1236 aa13.8□□□□□ -0.2
HMGN1-220ENST00000492280 TDRD12Q587J7 1177 aaKnown RBP13.8□□□□□ -0.2
HMGN1-220ENST00000492280 STRIP1Q5VSL9 837 aa13.8□□□□□ -0.2
HMGN1-220ENST00000492280 PPP1R18Q6NYC8 613 aa13.8□□□□□ -0.2
HMGN1-220ENST00000492280 CATSPER3Q86XQ3 398 aa13.8□□□□□ -0.2
HMGN1-220ENST00000492280 CEP112Q8N8E3 955 aa13.8□□□□□ -0.2
HMGN1-220ENST00000492280 HAUS4Q9H6D7 363 aa13.8□□□□□ -0.2
HMGN1-220ENST00000492280 JADE2Q9NQC1 790 aa13.8□□□□□ -0.2
HMGN1-220ENST00000492280 SALL4Q9UJQ4 1053 aa13.8□□□□□ -0.2
HMGN1-220ENST00000492280 BUB1O43683 1085 aa13.79□□□□□ -0.2
HMGN1-220ENST00000492280 IPO7O95373 1038 aaKnown RBP13.79□□□□□ -0.2
HMGN1-220ENST00000492280 TRMT1LQ7Z2T5 733 aaKnown RBP13.79□□□□□ -0.2
HMGN1-220ENST00000492280 TRAPPC11Q7Z392 1133 aa13.79□□□□□ -0.2
HMGN1-220ENST00000492280 SCFD1Q8WVM8 642 aa13.79□□□□□ -0.2
HMGN1-220ENST00000492280 EHD4Q9H223 541 aa13.79□□□□□ -0.2
HMGN1-220ENST00000492280 KCNMB3Q9NPA1 279 aa13.79□□□□□ -0.2
HMGN1-220ENST00000492280 AKR1B10O60218 316 aa13.79□□□□□ -0.2
HMGN1-220ENST00000492280 CFBP00751 764 aa13.79□□□□□ -0.2
HMGN1-220ENST00000492280 C2orf54Q08AI8 447 aa13.79□□□□□ -0.2
HMGN1-220ENST00000492280 CACNA2D4Q7Z3S7 1137 aa13.79□□□□□ -0.2
HMGN1-220ENST00000492280 FBXO11Q86XK2 927 aa13.79□□□□□ -0.2
HMGN1-220ENST00000492280 KSR1Q8IVT5 923 aa13.79□□□□□ -0.2
HMGN1-220ENST00000492280 PIGOQ8TEQ8 1089 aa13.79□□□□□ -0.2
HMGN1-220ENST00000492280 LENG9Q96B70 501 aa13.79□□□□□ -0.2
HMGN1-220ENST00000492280 LSM14BQ9BX40 385 aaKnown RBP13.79□□□□□ -0.2
HMGN1-220ENST00000492280 IFIH1Q9BYX4 1025 aaKnown RBP13.79□□□□□ -0.2
HMGN1-220ENST00000492280 GLIS2Q9BZE0 524 aaPredicted RBP13.79□□□□□ -0.2
HMGN1-220ENST00000492280 VEZTQ9HBM0 779 aa13.79□□□□□ -0.2
HMGN1-220ENST00000492280 PKD2L1Q9P0L9 805 aa13.79□□□□□ -0.2
HMGN1-220ENST00000492280 SPDYE3A6NKU9 549 aa13.78□□□□□ -0.2
HMGN1-220ENST00000492280 EML1O00423 815 aa13.78□□□□□ -0.2
HMGN1-220ENST00000492280 PRPF6O94906 941 aaKnown RBP13.78□□□□□ -0.2
HMGN1-220ENST00000492280 ACTN1P12814 892 aa13.78□□□□□ -0.2
HMGN1-220ENST00000492280 MATR3P43243 847 aaKnown RBP eCLIP13.78□□□□□ -0.2
HMGN1-220ENST00000492280 SPIRE1Q08AE8 756 aa13.78□□□□□ -0.2
HMGN1-220ENST00000492280 DGKZQ13574 1117 aa13.78□□□□□ -0.2
HMGN1-220ENST00000492280 ZCWPW2Q504Y3 356 aa13.78□□□□□ -0.2
HMGN1-220ENST00000492280 SYDE2Q5VT97 1194 aa13.78□□□□□ -0.2
HMGN1-220ENST00000492280 SFR1Q86XK3 245 aa13.78□□□□□ -0.2
HMGN1-220ENST00000492280 CAGE1Q8TC20 777 aa13.78□□□□□ -0.2
HMGN1-220ENST00000492280 CCDC17Q96LX7 622 aa13.78□□□□□ -0.2
HMGN1-220ENST00000492280 KRT86O43790 486 aa13.78□□□□□ -0.2
HMGN1-220ENST00000492280 PHACTR2O75167 634 aa13.78□□□□□ -0.2
HMGN1-220ENST00000492280 MYBP10242 640 aa13.78□□□□□ -0.2
HMGN1-220ENST00000492280 POLR2FP61218 127 aaKnown RBP13.78□□□□□ -0.2
HMGN1-220ENST00000492280 SMC1AQ14683 1233 aaKnown RBP13.78□□□□□ -0.2
HMGN1-220ENST00000492280 FAM83BQ5T0W9 1011 aa13.78□□□□□ -0.2
HMGN1-220ENST00000492280 ETNPPLQ8TBG4 499 aa13.78□□□□□ -0.2
HMGN1-220ENST00000492280 BAP1Q92560 729 aa13.78□□□□□ -0.2
HMGN1-220ENST00000492280 TSG101Q99816 390 aa13.78□□□□□ -0.2
HMGN1-220ENST00000492280 REEP2Q9BRK0 252 aa13.78□□□□□ -0.2
HMGN1-220ENST00000492280 AMNQ9BXJ7 453 aa13.78□□□□□ -0.2
HMGN1-220ENST00000492280 PDE11AQ9HCR9 933 aa13.78□□□□□ -0.2
HMGN1-220ENST00000492280 NYAP2Q9P242 653 aa13.78□□□□□ -0.2
HMGN1-220ENST00000492280 COL4A3BPQ9Y5P4 624 aa13.78□□□□□ -0.2
HMGN1-220ENST00000492280 MYO3BQ8WXR4 1341 aa13.78□□□□□ -0.2
HMGN1-220ENST00000492280 TULP1O00294 542 aaPredicted RBP13.77□□□□□ -0.2
HMGN1-220ENST00000492280 PSMD14O00487 310 aa13.77□□□□□ -0.2
HMGN1-220ENST00000492280 BMP3P12645 472 aa13.77□□□□□ -0.2
HMGN1-220ENST00000492280 KRT83P78385 493 aa13.77□□□□□ -0.2
HMGN1-220ENST00000492280 ORC2Q13416 577 aaPredicted RBP13.77□□□□□ -0.2
HMGN1-220ENST00000492280 CTTNQ14247 550 aaKnown RBP13.77□□□□□ -0.2
HMGN1-220ENST00000492280 EZH2Q15910 746 aaKnown RBP13.77□□□□□ -0.2
HMGN1-220ENST00000492280 TATDN1Q6P1N9 297 aa13.77□□□□□ -0.2
HMGN1-220ENST00000492280 NFRKBQ6P4R8 1299 aa13.77□□□□□ -0.2
HMGN1-220ENST00000492280 TMEM179Q6ZVK1 233 aa13.77□□□□□ -0.2
HMGN1-220ENST00000492280 COG1Q8WTW3 980 aa13.77□□□□□ -0.2
HMGN1-220ENST00000492280 DCAF4Q8WV16 495 aa13.77□□□□□ -0.2
HMGN1-220ENST00000492280 IDI2Q9BXS1 227 aa13.77□□□□□ -0.2
HMGN1-220ENST00000492280 GTPBP4Q9BZE4 634 aaKnown RBP13.77□□□□□ -0.2
HMGN1-220ENST00000492280 BHMT2Q9H2M3 363 aa13.77□□□□□ -0.2
HMGN1-220ENST00000492280 DHX36Q9H2U1 1008 aaKnown RBP13.77□□□□□ -0.2
HMGN1-220ENST00000492280 FBXO28Q9NVF7 368 aa13.77□□□□□ -0.2
HMGN1-220ENST00000492280 PLAGL2Q9UPG8 496 aa13.77□□□□□ -0.2
HMGN1-220ENST00000492280 BCS1LQ9Y276 419 aa13.77□□□□□ -0.2
HMGN1-220ENST00000492280 SAR1BQ9Y6B6 198 aa13.77□□□□□ -0.2
HMGN1-220ENST00000492280 EIF3CLB5ME19 914 aaKnown RBP13.77□□□□□ -0.21
HMGN1-220ENST00000492280 MSH4O15457 936 aa13.77□□□□□ -0.21
HMGN1-220ENST00000492280 SPATA31C1P0DKV0 1188 aa13.77□□□□□ -0.21
HMGN1-220ENST00000492280 RASSF7Q02833 373 aa13.77□□□□□ -0.21
HMGN1-220ENST00000492280 LRRC63Q05C16 580 aa13.77□□□□□ -0.21
HMGN1-220ENST00000492280 GABPB1Q06547 395 aaPredicted RBP13.77□□□□□ -0.21
HMGN1-220ENST00000492280 BEND6Q5SZJ8 279 aaPredicted RBP13.77□□□□□ -0.21
HMGN1-220ENST00000492280 NEK11Q8NG66 645 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms