RNA–Protein interactions for RNA: ENST00000491429.1

SCN1A-206, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 542 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-206ENST00000491429 CHAMP1Q96JM3 812 aa7.15□□□□□ -1.26
SCN1A-206ENST00000491429 BARX1Q9HBU1 254 aaPredicted RBP7.15□□□□□ -1.26
SCN1A-206ENST00000491429 MYOTQ9UBF9 498 aa7.15□□□□□ -1.26
SCN1A-206ENST00000491429 LSAMPQ13449 338 aa7.14□□□□□ -1.27
SCN1A-206ENST00000491429 TESK1Q15569 626 aa7.14□□□□□ -1.27
SCN1A-206ENST00000491429 ACBD5Q5T8D3 534 aaPredicted RBP7.14□□□□□ -1.27
SCN1A-206ENST00000491429 DENND5AQ6IQ26 1287 aa7.14□□□□□ -1.27
SCN1A-206ENST00000491429 PPIL6Q8IXY8 311 aa7.14□□□□□ -1.27
SCN1A-206ENST00000491429 WRNIP1Q96S55 665 aa7.14□□□□□ -1.27
SCN1A-206ENST00000491429 CLDND1Q9NY35 253 aa7.14□□□□□ -1.27
SCN1A-206ENST00000491429 DGKIO75912 1065 aa7.13□□□□□ -1.27
SCN1A-206ENST00000491429 LTBRP36941 435 aa7.13□□□□□ -1.27
SCN1A-206ENST00000491429 PROSER1Q86XN7 944 aa7.13□□□□□ -1.27
SCN1A-206ENST00000491429 NT5DC4Q86YG4 428 aa7.13□□□□□ -1.27
SCN1A-206ENST00000491429 ADAM29Q9UKF5 820 aa7.13□□□□□ -1.27
SCN1A-206ENST00000491429 CNOT4O95628 575 aaKnown RBP7.12□□□□□ -1.27
SCN1A-206ENST00000491429 KCNJ6P48051 423 aa7.12□□□□□ -1.27
SCN1A-206ENST00000491429 SV2CQ496J9 727 aa7.12□□□□□ -1.27
SCN1A-206ENST00000491429 C6orf15Q6UXA7 325 aaPredicted RBP7.12□□□□□ -1.27
SCN1A-206ENST00000491429 SEC16BQ96JE7 1060 aa7.12□□□□□ -1.27
SCN1A-206ENST00000491429 GNRHR2Q96P88 292 aa7.12□□□□□ -1.27
SCN1A-206ENST00000491429 EPB41L1Q9H4G0 881 aa7.12□□□□□ -1.27
SCN1A-206ENST00000491429 TESMINQ9Y4I5 508 aa7.12□□□□□ -1.27
SCN1A-206ENST00000491429 B2RBV5 119 aa7.11□□□□□ -1.27
SCN1A-206ENST00000491429 KLHL18O94889 574 aa7.11□□□□□ -1.27
SCN1A-206ENST00000491429 HDLBPQ00341 1268 aaKnown RBP7.11□□□□□ -1.27
SCN1A-206ENST00000491429 KRTAP1-1Q07627 177 aa7.11□□□□□ -1.27
SCN1A-206ENST00000491429 TMEM145Q8NBT3 493 aa7.11□□□□□ -1.27
SCN1A-206ENST00000491429 CDIP1Q9H305 208 aa7.11□□□□□ -1.27
SCN1A-206ENST00000491429 SEMA4AQ9H3S1 761 aa7.11□□□□□ -1.27
SCN1A-206ENST00000491429 LRP2BPQ9P2M1 347 aa7.11□□□□□ -1.27
SCN1A-206ENST00000491429 FOXS1O43638 330 aa7.1□□□□□ -1.27
SCN1A-206ENST00000491429 CPP00450 1065 aa7.1□□□□□ -1.27
SCN1A-206ENST00000491429 GFRA1P56159 465 aa7.1□□□□□ -1.27
SCN1A-206ENST00000491429 PHOSPHO1Q8TCT1 267 aa7.1□□□□□ -1.27
SCN1A-206ENST00000491429 C1orf159Q96HA4 380 aa7.1□□□□□ -1.27
SCN1A-206ENST00000491429 ZNF341Q9BYN7 854 aa7.1□□□□□ -1.27
SCN1A-206ENST00000491429 SMOC1Q9H4F8 434 aa7.1□□□□□ -1.27
SCN1A-206ENST00000491429 HSPBP1Q9NZL4 362 aa7.1□□□□□ -1.27
SCN1A-206ENST00000491429 ASH2LQ9UBL3 628 aa7.1□□□□□ -1.27
SCN1A-206ENST00000491429 VAMP1P23763 118 aa7.09□□□□□ -1.27
SCN1A-206ENST00000491429 GRIN1Q05586 938 aa7.09□□□□□ -1.27
SCN1A-206ENST00000491429 Q6ZUG5 572 aa7.09□□□□□ -1.27
SCN1A-206ENST00000491429 RALYLQ86SE5 291 aaKnown RBP7.09□□□□□ -1.27
SCN1A-206ENST00000491429 DTX3Q8N9I9 347 aa7.09□□□□□ -1.27
SCN1A-206ENST00000491429 STRIP2Q9ULQ0 834 aa7.09□□□□□ -1.27
SCN1A-206ENST00000491429 NPIPB8E9PQR5 432 aa7.08□□□□□ -1.28
SCN1A-206ENST00000491429 VASNQ6EMK4 673 aa7.08□□□□□ -1.28
SCN1A-206ENST00000491429 TCTN3Q6NUS6 607 aa7.08□□□□□ -1.28
SCN1A-206ENST00000491429 GPR155Q7Z3F1 870 aa7.08□□□□□ -1.28
SCN1A-206ENST00000491429 HOMEZQ8IX15 550 aa7.08□□□□□ -1.28
SCN1A-206ENST00000491429 FAM178BQ8IXR5 827 aa7.08□□□□□ -1.28
SCN1A-206ENST00000491429 PIP4K2CQ8TBX8 421 aa7.08□□□□□ -1.28
SCN1A-206ENST00000491429 CLEC4DQ8WXI8 215 aa7.08□□□□□ -1.28
SCN1A-206ENST00000491429 CCDC140Q96MF4 163 aa7.08□□□□□ -1.28
SCN1A-206ENST00000491429 JAM3Q9BX67 310 aa7.08□□□□□ -1.28
SCN1A-206ENST00000491429 DLL4Q9NR61 685 aa7.08□□□□□ -1.28
SCN1A-206ENST00000491429 SLC27A2O14975 620 aa7.07□□□□□ -1.28
SCN1A-206ENST00000491429 SMAD7O15105 426 aaKnown RBP7.07□□□□□ -1.28
SCN1A-206ENST00000491429 SUSD5O60279 629 aa7.07□□□□□ -1.28
SCN1A-206ENST00000491429 SMAD2Q15796 467 aaKnown RBP7.07□□□□□ -1.28
SCN1A-206ENST00000491429 LARP1BQ659C4 914 aaKnown RBP7.07□□□□□ -1.28
SCN1A-206ENST00000491429 RBM12BQ8IXT5 1001 aaKnown RBP7.07□□□□□ -1.28
SCN1A-206ENST00000491429 LRRC37BQ96QE4 947 aa7.07□□□□□ -1.28
SCN1A-206ENST00000491429 LMF1Q96S06 567 aa7.07□□□□□ -1.28
SCN1A-206ENST00000491429 SEC61A2Q9H9S3 476 aa7.07□□□□□ -1.28
SCN1A-206ENST00000491429 NPFFR2Q9Y5X5 522 aa7.07□□□□□ -1.28
SCN1A-206ENST00000491429 SLC4A7Q9Y6M7 1214 aa7.07□□□□□ -1.28
SCN1A-206ENST00000491429 KNG1P01042 644 aa7.06□□□□□ -1.28
SCN1A-206ENST00000491429 CSF2RBP32927 897 aa7.06□□□□□ -1.28
SCN1A-206ENST00000491429 SLC35F1Q5T1Q4 408 aa7.06□□□□□ -1.28
SCN1A-206ENST00000491429 IGFL4Q6B9Z1 124 aa7.06□□□□□ -1.28
SCN1A-206ENST00000491429 MRM1Q6IN84 353 aaKnown RBP7.06□□□□□ -1.28
SCN1A-206ENST00000491429 TTLL11Q8NHH1 800 aa7.06□□□□□ -1.28
SCN1A-206ENST00000491429 ACBD3Q9H3P7 528 aa7.06□□□□□ -1.28
SCN1A-206ENST00000491429 SLC6A20Q9NP91 592 aa7.06□□□□□ -1.28
SCN1A-206ENST00000491429 PPARGC1AQ9UBK2 798 aaKnown RBP7.06□□□□□ -1.28
SCN1A-206ENST00000491429 KRIT1O00522 736 aa7.05□□□□□ -1.28
SCN1A-206ENST00000491429 MAFKO60675 156 aa7.05□□□□□ -1.28
SCN1A-206ENST00000491429 MSCO60682 206 aa7.05□□□□□ -1.28
SCN1A-206ENST00000491429 CKMP06732 381 aa7.05□□□□□ -1.28
SCN1A-206ENST00000491429 GRIA2P42262 883 aa7.05□□□□□ -1.28
SCN1A-206ENST00000491429 GLRBP48167 497 aa7.05□□□□□ -1.28
SCN1A-206ENST00000491429 FOXE3Q13461 319 aa7.05□□□□□ -1.28
SCN1A-206ENST00000491429 FHL2Q14192 279 aa7.05□□□□□ -1.28
SCN1A-206ENST00000491429 PRKD1Q15139 912 aaPredicted RBP7.05□□□□□ -1.28
SCN1A-206ENST00000491429 HS1BP3Q53T59 392 aa7.05□□□□□ -1.28
SCN1A-206ENST00000491429 CYP4F22Q6NT55 531 aa7.05□□□□□ -1.28
SCN1A-206ENST00000491429 AJUBAQ96IF1 538 aa7.05□□□□□ -1.28
SCN1A-206ENST00000491429 ADOQ96SZ5 270 aa7.05□□□□□ -1.28
SCN1A-206ENST00000491429 ACTR10Q9NZ32 417 aa7.05□□□□□ -1.28
SCN1A-206ENST00000491429 ZFP69BQ9UJL9 534 aa7.05□□□□□ -1.28
SCN1A-206ENST00000491429 ZFR2Q9UPR6 939 aaKnown RBP7.05□□□□□ -1.28
SCN1A-206ENST00000491429 PTPN22Q9Y2R2 807 aa7.05□□□□□ -1.28
SCN1A-206ENST00000491429 MRVI1Q9Y6F6 885 aa7.05□□□□□ -1.28
SCN1A-206ENST00000491429 ZBTB7CA1YPR0 619 aa7.04□□□□□ -1.28
SCN1A-206ENST00000491429 FBXO21O94952 628 aa7.04□□□□□ -1.28
SCN1A-206ENST00000491429 CAPNS1P04632 268 aa7.04□□□□□ -1.28
SCN1A-206ENST00000491429 SKIDA1Q1XH10 827 aa7.04□□□□□ -1.28
SCN1A-206ENST00000491429 TMCO4Q5TGY1 634 aa7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms