RNA–Protein interactions for RNA: ENST00000489961.1

VPS13D-210, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 443 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-210ENST00000489961 TCEAL9Q9UHQ7 104 aa12.34□□□□□ -0.43
VPS13D-210ENST00000489961 NOL7Q9UMY1 257 aaKnown RBP12.34□□□□□ -0.43
VPS13D-210ENST00000489961 PHF24Q9UPV7 400 aa12.34□□□□□ -0.43
VPS13D-210ENST00000489961 NFASCO94856 1347 aa12.34□□□□□ -0.43
VPS13D-210ENST00000489961 CENPFP49454 3210 aa12.33□□□□□ -0.43
VPS13D-210ENST00000489961 VPS37CA5D8V6 355 aaPredicted RBP12.33□□□□□ -0.44
VPS13D-210ENST00000489961 A6NJR5 290 aa12.33□□□□□ -0.44
VPS13D-210ENST00000489961 IPO5O00410 1097 aaKnown RBP12.33□□□□□ -0.44
VPS13D-210ENST00000489961 CTAGE5O15320 804 aa12.33□□□□□ -0.44
VPS13D-210ENST00000489961 EDIL3O43854 480 aa12.33□□□□□ -0.44
VPS13D-210ENST00000489961 CABYRO75952 493 aa12.33□□□□□ -0.44
VPS13D-210ENST00000489961 ASGR1P07306 291 aa12.33□□□□□ -0.44
VPS13D-210ENST00000489961 MMP3P08254 477 aa12.33□□□□□ -0.44
VPS13D-210ENST00000489961 PDIA4P13667 645 aaKnown RBP12.33□□□□□ -0.44
VPS13D-210ENST00000489961 MNX1P50219 401 aaPredicted RBP12.33□□□□□ -0.44
VPS13D-210ENST00000489961 ACLYP53396 1101 aa12.33□□□□□ -0.44
VPS13D-210ENST00000489961 DGKDQ16760 1214 aa12.33□□□□□ -0.44
VPS13D-210ENST00000489961 CCSAPQ6IQ19 270 aaPredicted RBP12.33□□□□□ -0.44
VPS13D-210ENST00000489961 DIS3LQ8TF46 1054 aaKnown RBP12.33□□□□□ -0.44
VPS13D-210ENST00000489961 GLT1D1Q96MS3 346 aa12.33□□□□□ -0.44
VPS13D-210ENST00000489961 MBOAT7Q96N66 472 aa12.33□□□□□ -0.44
VPS13D-210ENST00000489961 TBC1D22BQ9NU19 505 aa12.33□□□□□ -0.44
VPS13D-210ENST00000489961 KIF28PB7ZC32 967 aa12.32□□□□□ -0.44
VPS13D-210ENST00000489961 MSH4O15457 936 aa12.32□□□□□ -0.44
VPS13D-210ENST00000489961 MARCH6O60337 910 aa12.32□□□□□ -0.44
VPS13D-210ENST00000489961 MYL3P08590 195 aa12.32□□□□□ -0.44
VPS13D-210ENST00000489961 ATP2B1P20020 1258 aa12.32□□□□□ -0.44
VPS13D-210ENST00000489961 SYT1P21579 422 aa12.32□□□□□ -0.44
VPS13D-210ENST00000489961 TRAPPC10P48553 1259 aa12.32□□□□□ -0.44
VPS13D-210ENST00000489961 SP4Q02446 784 aa12.32□□□□□ -0.44
VPS13D-210ENST00000489961 HSDL1Q3SXM5 330 aa12.32□□□□□ -0.44
VPS13D-210ENST00000489961 UBE2Q1Q7Z7E8 422 aa12.32□□□□□ -0.44
VPS13D-210ENST00000489961 SPRYD3Q8NCJ5 442 aa12.32□□□□□ -0.44
VPS13D-210ENST00000489961 FERMT2Q96AC1 680 aa12.32□□□□□ -0.44
VPS13D-210ENST00000489961 LENG9Q96B70 501 aa12.32□□□□□ -0.44
VPS13D-210ENST00000489961 SENP6Q9GZR1 1112 aaPredicted RBP12.32□□□□□ -0.44
VPS13D-210ENST00000489961 BCAS3Q9H6U6 928 aa12.32□□□□□ -0.44
VPS13D-210ENST00000489961 JPH1Q9HDC5 661 aaPredicted RBP12.32□□□□□ -0.44
VPS13D-210ENST00000489961 SLC9A2Q9UBY0 812 aa12.32□□□□□ -0.44
VPS13D-210ENST00000489961 A0A1W2PQ45 241 aaPredicted RBP12.31□□□□□ -0.44
VPS13D-210ENST00000489961 A0A1W2PQY0 241 aa12.31□□□□□ -0.44
VPS13D-210ENST00000489961 TBX3O15119 743 aa12.31□□□□□ -0.44
VPS13D-210ENST00000489961 STX6O43752 255 aa12.31□□□□□ -0.44
VPS13D-210ENST00000489961 SLC37A4O43826 429 aa12.31□□□□□ -0.44
VPS13D-210ENST00000489961 PPFIA4O75335 1185 aa12.31□□□□□ -0.44
VPS13D-210ENST00000489961 BAG4O95429 457 aaKnown RBP12.31□□□□□ -0.44
VPS13D-210ENST00000489961 COL6A1P12109 1028 aa12.31□□□□□ -0.44
VPS13D-210ENST00000489961 ITGB3BPQ13352 177 aaPredicted RBP12.31□□□□□ -0.44
VPS13D-210ENST00000489961 ORC2Q13416 577 aaPredicted RBP12.31□□□□□ -0.44
VPS13D-210ENST00000489961 LRCH2Q5VUJ6 765 aa12.31□□□□□ -0.44
VPS13D-210ENST00000489961 CXCL17Q6UXB2 119 aa12.31□□□□□ -0.44
VPS13D-210ENST00000489961 SEPT1Q8WYJ6 367 aa12.31□□□□□ -0.44
VPS13D-210ENST00000489961 VTI1AQ96AJ9 217 aa12.31□□□□□ -0.44
VPS13D-210ENST00000489961 FAM20AQ96MK3 541 aa12.31□□□□□ -0.44
VPS13D-210ENST00000489961 RIT2Q99578 217 aa12.31□□□□□ -0.44
VPS13D-210ENST00000489961 MTG1Q9BT17 334 aaPredicted RBP12.31□□□□□ -0.44
VPS13D-210ENST00000489961 HTATIP2Q9BUP3 242 aa12.31□□□□□ -0.44
VPS13D-210ENST00000489961 TEKT3Q9BXF9 490 aa12.31□□□□□ -0.44
VPS13D-210ENST00000489961 STARD7Q9NQZ5 370 aa12.31□□□□□ -0.44
VPS13D-210ENST00000489961 ELP1O95163 1332 aa12.31□□□□□ -0.44
VPS13D-210ENST00000489961 DDX39AO00148 427 aaKnown RBP12.3□□□□□ -0.44
VPS13D-210ENST00000489961 NEMFO60524 1076 aa12.3□□□□□ -0.44
VPS13D-210ENST00000489961 GAS7O60861 476 aa12.3□□□□□ -0.44
VPS13D-210ENST00000489961 HOXD8P13378 290 aaPredicted RBP12.3□□□□□ -0.44
VPS13D-210ENST00000489961 ANP32AP39687 249 aaKnown RBP12.3□□□□□ -0.44
VPS13D-210ENST00000489961 PURAQ00577 322 aaKnown RBP12.3□□□□□ -0.44
VPS13D-210ENST00000489961 KRT76Q01546 638 aa12.3□□□□□ -0.44
VPS13D-210ENST00000489961 RILPL1Q5EBL4 403 aa12.3□□□□□ -0.44
VPS13D-210ENST00000489961 TTC38Q5R3I4 469 aa12.3□□□□□ -0.44
VPS13D-210ENST00000489961 BRAPQ7Z569 592 aa12.3□□□□□ -0.44
VPS13D-210ENST00000489961 SLFN12Q8IYM2 578 aa12.3□□□□□ -0.44
VPS13D-210ENST00000489961 SLC5A5Q92911 643 aa12.3□□□□□ -0.44
VPS13D-210ENST00000489961 UIMC1Q96RL1 719 aa12.3□□□□□ -0.44
VPS13D-210ENST00000489961 GPR20Q99678 358 aa12.3□□□□□ -0.44
VPS13D-210ENST00000489961 KATNAL1Q9BW62 490 aa12.3□□□□□ -0.44
VPS13D-210ENST00000489961 A0A0U1RQG5 324 aaPredicted RBP12.29□□□□□ -0.44
VPS13D-210ENST00000489961 DHX15O43143 795 aaKnown RBP12.29□□□□□ -0.44
VPS13D-210ENST00000489961 MCM7P33993 719 aa12.29□□□□□ -0.44
VPS13D-210ENST00000489961 TCF7P36402 384 aaPredicted RBP12.29□□□□□ -0.44
VPS13D-210ENST00000489961 RGS19P49795 217 aa12.29□□□□□ -0.44
VPS13D-210ENST00000489961 ACTR2P61160 394 aa12.29□□□□□ -0.44
VPS13D-210ENST00000489961 ZNF174Q15697 407 aa12.29□□□□□ -0.44
VPS13D-210ENST00000489961 CALCRLQ16602 461 aa12.29□□□□□ -0.44
VPS13D-210ENST00000489961 ZNF746Q6NUN9 644 aaPredicted RBP12.29□□□□□ -0.44
VPS13D-210ENST00000489961 SLC39A5Q6ZMH5 540 aa12.29□□□□□ -0.44
VPS13D-210ENST00000489961 FERMT3Q86UX7 667 aa12.29□□□□□ -0.44
VPS13D-210ENST00000489961 POTEDQ86YR6 584 aa12.29□□□□□ -0.44
VPS13D-210ENST00000489961 ETNPPLQ8TBG4 499 aa12.29□□□□□ -0.44
VPS13D-210ENST00000489961 SEZ6LQ9BYH1 1024 aa12.29□□□□□ -0.44
VPS13D-210ENST00000489961 KCNMB3Q9NPA1 279 aa12.29□□□□□ -0.44
VPS13D-210ENST00000489961 MTMR6Q9Y217 621 aa12.29□□□□□ -0.44
VPS13D-210ENST00000489961 GSTTP1A0A1W2PQM5 241 aa12.28□□□□□ -0.44
VPS13D-210ENST00000489961 WNT7AO00755 349 aa12.28□□□□□ -0.44
VPS13D-210ENST00000489961 PSMD10O75832 226 aa12.28□□□□□ -0.44
VPS13D-210ENST00000489961 F2P00734 622 aa12.28□□□□□ -0.44
VPS13D-210ENST00000489961 LGALS2P05162 132 aa12.28□□□□□ -0.44
VPS13D-210ENST00000489961 ZNF286BP0CG31 522 aa12.28□□□□□ -0.44
VPS13D-210ENST00000489961 SFNP31947 248 aa12.28□□□□□ -0.44
VPS13D-210ENST00000489961 ATN1P54259 1190 aaPredicted RBP12.28□□□□□ -0.44
VPS13D-210ENST00000489961 ITGA7Q13683 1181 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms