RNA–Protein interactions for RNA: ENST00000489540.1

MDC1-206, Transcript of mediator of DNA damage checkpoint 1, humanhuman

TSL 2

Gene MDC1, Length 1,402 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MDC1-206ENST00000489540 KCNH7Q9NS40 1196 aa19.77■□□□□ 0.76
MDC1-206ENST00000489540 CEP290O15078 2479 aa19.77■□□□□ 0.76
MDC1-206ENST00000489540 ST18O60284 1047 aa19.76■□□□□ 0.75
MDC1-206ENST00000489540 RAG1P15918 1043 aa19.76■□□□□ 0.75
MDC1-206ENST00000489540 NSUN7Q8NE18 718 aaKnown RBP19.76■□□□□ 0.75
MDC1-206ENST00000489540 TBC1D32Q96NH3 1257 aa19.76■□□□□ 0.75
MDC1-206ENST00000489540 GPR20Q99678 358 aa19.76■□□□□ 0.75
MDC1-206ENST00000489540 ALG1Q9BT22 464 aa19.76■□□□□ 0.75
MDC1-206ENST00000489540 TBX21Q9UL17 535 aa19.76■□□□□ 0.75
MDC1-206ENST00000489540 ALPK3Q96L96 1907 aa19.76■□□□□ 0.75
MDC1-206ENST00000489540 F2P00734 622 aa19.76■□□□□ 0.75
MDC1-206ENST00000489540 FDPSP14324 419 aaKnown RBP19.76■□□□□ 0.75
MDC1-206ENST00000489540 USP11P51784 963 aa19.76■□□□□ 0.75
MDC1-206ENST00000489540 MDM2Q00987 491 aaPredicted RBP19.76■□□□□ 0.75
MDC1-206ENST00000489540 FAM47CQ5HY64 1035 aa19.76■□□□□ 0.75
MDC1-206ENST00000489540 SESTD1Q86VW0 696 aa19.76■□□□□ 0.75
MDC1-206ENST00000489540 LLPHQ9BRT6 129 aaKnown RBP19.76■□□□□ 0.75
MDC1-206ENST00000489540 PHF20Q9BVI0 1012 aa19.76■□□□□ 0.75
MDC1-206ENST00000489540 TRPV6Q9H1D0 765 aa19.76■□□□□ 0.75
MDC1-206ENST00000489540 A0A1W2PPC1 479 aa19.75■□□□□ 0.75
MDC1-206ENST00000489540 B4GALT4O60513 344 aa19.75■□□□□ 0.75
MDC1-206ENST00000489540 TIMP1P01033 207 aa19.75■□□□□ 0.75
MDC1-206ENST00000489540 ARP10275 920 aa19.75■□□□□ 0.75
MDC1-206ENST00000489540 CIITAP33076 1130 aa19.75■□□□□ 0.75
MDC1-206ENST00000489540 PSEN2P49810 448 aa19.75■□□□□ 0.75
MDC1-206ENST00000489540 CHMP4BP1P59074 171 aa19.75■□□□□ 0.75
MDC1-206ENST00000489540 MFSD10Q14728 455 aa19.75■□□□□ 0.75
MDC1-206ENST00000489540 PLA2G4DQ86XP0 818 aa19.75■□□□□ 0.75
MDC1-206ENST00000489540 BADQ92934 168 aa19.75■□□□□ 0.75
MDC1-206ENST00000489540 SDF4Q9BRK5 362 aa19.75■□□□□ 0.75
MDC1-206ENST00000489540 C16orf70Q9BSU1 422 aa19.75■□□□□ 0.75
MDC1-206ENST00000489540 BACH2Q9BYV9 841 aa19.75■□□□□ 0.75
MDC1-206ENST00000489540 UBE2OQ9C0C9 1292 aaKnown RBP19.75■□□□□ 0.75
MDC1-206ENST00000489540 AGO4Q9HCK5 861 aaKnown RBP19.75■□□□□ 0.75
MDC1-206ENST00000489540 KCNJ14Q9UNX9 436 aa19.75■□□□□ 0.75
MDC1-206ENST00000489540 KIAA1217Q5T5P2 1943 aa19.75■□□□□ 0.75
MDC1-206ENST00000489540 NFASCO94856 1347 aa19.74■□□□□ 0.75
MDC1-206ENST00000489540 FAM86B1E9PN63 330 aa19.74■□□□□ 0.75
MDC1-206ENST00000489540 M0R2N6 131 aa19.74■□□□□ 0.75
MDC1-206ENST00000489540 HAS3O00219 553 aa19.74■□□□□ 0.75
MDC1-206ENST00000489540 FAM86B2P0C5J1 330 aa19.74■□□□□ 0.75
MDC1-206ENST00000489540 ZNF286BP0CG31 522 aa19.74■□□□□ 0.75
MDC1-206ENST00000489540 NPY5RQ15761 445 aa19.74■□□□□ 0.75
MDC1-206ENST00000489540 KIAA0753Q2KHM9 967 aa19.74■□□□□ 0.75
MDC1-206ENST00000489540 C7orf31Q8N865 590 aa19.74■□□□□ 0.75
MDC1-206ENST00000489540 SEPT1Q8WYJ6 367 aa19.74■□□□□ 0.75
MDC1-206ENST00000489540 PKD2L1Q9P0L9 805 aa19.74■□□□□ 0.75
MDC1-206ENST00000489540 H3BRB1 525 aa19.73■□□□□ 0.75
MDC1-206ENST00000489540 LGALS2P05162 132 aa19.73■□□□□ 0.75
MDC1-206ENST00000489540 ITGB8P26012 769 aa19.73■□□□□ 0.75
MDC1-206ENST00000489540 SETQ01105 290 aaPredicted RBP19.73■□□□□ 0.75
MDC1-206ENST00000489540 SP4Q02446 784 aa19.73■□□□□ 0.75
MDC1-206ENST00000489540 HABP4Q5JVS0 413 aaKnown RBP19.73■□□□□ 0.75
MDC1-206ENST00000489540 KRT25Q7Z3Z0 450 aa19.73■□□□□ 0.75
MDC1-206ENST00000489540 CCDC83Q8IWF9 413 aa19.73■□□□□ 0.75
MDC1-206ENST00000489540 TBCKQ8TEA7 893 aa19.73■□□□□ 0.75
MDC1-206ENST00000489540 TUT1Q9H6E5 874 aaKnown RBP19.73■□□□□ 0.75
MDC1-206ENST00000489540 JPH1Q9HDC5 661 aaPredicted RBP19.73■□□□□ 0.75
MDC1-206ENST00000489540 TRMT13Q9NUP7 481 aaKnown RBP19.73■□□□□ 0.75
MDC1-206ENST00000489540 IGLV3-22A0A075B6J6 115 aa19.72■□□□□ 0.75
MDC1-206ENST00000489540 JAK2O60674 1132 aa19.72■□□□□ 0.75
MDC1-206ENST00000489540 DTNBO60941 627 aa19.72■□□□□ 0.75
MDC1-206ENST00000489540 ST3GAL1Q11201 340 aa19.72■□□□□ 0.75
MDC1-206ENST00000489540 SLC9A2Q9UBY0 812 aa19.72■□□□□ 0.75
MDC1-206ENST00000489540 ZNF215Q9UL58 517 aaPredicted RBP19.72■□□□□ 0.75
MDC1-206ENST00000489540 NOD1Q9Y239 953 aa19.72■□□□□ 0.75
MDC1-206ENST00000489540 MCM2P49736 904 aa19.71■□□□□ 0.75
MDC1-206ENST00000489540 TRIM29Q14134 588 aa19.71■□□□□ 0.75
MDC1-206ENST00000489540 NONOQ15233 471 aaKnown RBP eCLIP19.71■□□□□ 0.75
MDC1-206ENST00000489540 PRR16Q569H4 304 aa19.71■□□□□ 0.75
MDC1-206ENST00000489540 UTP14CQ5TAP6 766 aaKnown RBP19.71■□□□□ 0.75
MDC1-206ENST00000489540 MFSD5Q6N075 450 aa19.71■□□□□ 0.75
MDC1-206ENST00000489540 TMEM199Q8N511 208 aa19.71■□□□□ 0.75
MDC1-206ENST00000489540 HIPK3Q9H422 1215 aa19.71■□□□□ 0.75
MDC1-206ENST00000489540 BRMS1Q9HCU9 246 aa19.71■□□□□ 0.75
MDC1-206ENST00000489540 TBC1D22BQ9NU19 505 aa19.71■□□□□ 0.75
MDC1-206ENST00000489540 HDAC6Q9UBN7 1215 aa19.71■□□□□ 0.75
MDC1-206ENST00000489540 GTF2IRD1Q9UHL9 959 aa19.71■□□□□ 0.75
MDC1-206ENST00000489540 CCDC194A0A1B0GVG4 234 aa19.7■□□□□ 0.74
MDC1-206ENST00000489540 GSTTP1A0A1W2PQM5 241 aa19.7■□□□□ 0.74
MDC1-206ENST00000489540 IPO5O00410 1097 aaKnown RBP19.7■□□□□ 0.74
MDC1-206ENST00000489540 TCF7P36402 384 aaPredicted RBP19.7■□□□□ 0.74
MDC1-206ENST00000489540 HMGN5P82970 282 aaKnown RBP19.7■□□□□ 0.74
MDC1-206ENST00000489540 FPGSQ05932 587 aa19.7■□□□□ 0.74
MDC1-206ENST00000489540 ITGB3BPQ13352 177 aaPredicted RBP19.7■□□□□ 0.74
MDC1-206ENST00000489540 PTGISQ16647 500 aa19.7■□□□□ 0.74
MDC1-206ENST00000489540 PPP1R13LQ8WUF5 828 aa19.7■□□□□ 0.74
MDC1-206ENST00000489540 ZNF577Q9BSK1 485 aa19.7■□□□□ 0.74
MDC1-206ENST00000489540 GJB4Q9NTQ9 266 aa19.7■□□□□ 0.74
MDC1-206ENST00000489540 TELO2Q9Y4R8 837 aa19.7■□□□□ 0.74
MDC1-206ENST00000489540 EDIL3O43854 480 aa19.69■□□□□ 0.74
MDC1-206ENST00000489540 GDF6Q6KF10 455 aaPredicted RBP19.69■□□□□ 0.74
MDC1-206ENST00000489540 TDHQ8IZJ6 230 aa19.69■□□□□ 0.74
MDC1-206ENST00000489540 NOC4LQ9BVI4 516 aaKnown RBP19.69■□□□□ 0.74
MDC1-206ENST00000489540 PPP1R12CQ9BZL4 782 aa19.69■□□□□ 0.74
MDC1-206ENST00000489540 SMARCAD1Q9H4L7 1026 aa19.69■□□□□ 0.74
MDC1-206ENST00000489540 PCDH10Q9P2E7 1040 aa19.69■□□□□ 0.74
MDC1-206ENST00000489540 SCN10AQ9Y5Y9 1956 aa19.69■□□□□ 0.74
MDC1-206ENST00000489540 CYP3A7-CYP3A51PA0A087WV96 503 aa19.68■□□□□ 0.74
MDC1-206ENST00000489540 CYP2C9P11712 490 aa19.68■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms