RNA–Protein interactions for RNA: ENST00000486711.1

SMC4-218, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 621 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-218ENST00000486711 FBXL7Q9UJT9 491 aa6.72□□□□□ -1.33
SMC4-218ENST00000486711 INVSQ9Y283 1065 aa6.72□□□□□ -1.33
SMC4-218ENST00000486711 MSRB2Q9Y3D2 182 aa6.72□□□□□ -1.33
SMC4-218ENST00000486711 PCDHB4Q9Y5E5 795 aa6.72□□□□□ -1.33
SMC4-218ENST00000486711 PCDHA2Q9Y5H9 948 aa6.72□□□□□ -1.33
SMC4-218ENST00000486711 AGRPO00253 132 aa6.71□□□□□ -1.34
SMC4-218ENST00000486711 RASGRF1Q13972 1273 aa6.71□□□□□ -1.34
SMC4-218ENST00000486711 SF1Q15637 639 aaKnown RBP6.71□□□□□ -1.34
SMC4-218ENST00000486711 PRAMEF18Q5VWM3 479 aa6.71□□□□□ -1.34
SMC4-218ENST00000486711 MRM1Q6IN84 353 aaKnown RBP6.71□□□□□ -1.34
SMC4-218ENST00000486711 EEPD1Q7L9B9 569 aa6.71□□□□□ -1.34
SMC4-218ENST00000486711 TMEM145Q8NBT3 493 aa6.71□□□□□ -1.34
SMC4-218ENST00000486711 LOXL4Q96JB6 756 aa6.71□□□□□ -1.34
SMC4-218ENST00000486711 EPB41L1Q9H4G0 881 aa6.71□□□□□ -1.34
SMC4-218ENST00000486711 CLDND1Q9NY35 253 aa6.71□□□□□ -1.34
SMC4-218ENST00000486711 TCRBV5S2A0A599 114 aa6.7□□□□□ -1.34
SMC4-218ENST00000486711 CYP7B1O75881 506 aa6.7□□□□□ -1.34
SMC4-218ENST00000486711 DGKIO75912 1065 aa6.7□□□□□ -1.34
SMC4-218ENST00000486711 CLSTN1O94985 981 aa6.7□□□□□ -1.34
SMC4-218ENST00000486711 LCP1P13796 627 aa6.7□□□□□ -1.34
SMC4-218ENST00000486711 ZNF28P17035 718 aa6.7□□□□□ -1.34
SMC4-218ENST00000486711 SURF1Q15526 300 aa6.7□□□□□ -1.34
SMC4-218ENST00000486711 MTERF2Q49AM1 385 aa6.7□□□□□ -1.34
SMC4-218ENST00000486711 PLEKHH3Q7Z736 793 aa6.7□□□□□ -1.34
SMC4-218ENST00000486711 CLIC6Q96NY7 704 aa6.7□□□□□ -1.34
SMC4-218ENST00000486711 WRNIP1Q96S55 665 aa6.7□□□□□ -1.34
SMC4-218ENST00000486711 TMPRSS5Q9H3S3 457 aa6.7□□□□□ -1.34
SMC4-218ENST00000486711 TBX22Q9Y458 520 aa6.7□□□□□ -1.34
SMC4-218ENST00000486711 ZNF536O15090 1300 aa6.7□□□□□ -1.34
SMC4-218ENST00000486711 FAM221BA6H8Z2 402 aa6.69□□□□□ -1.34
SMC4-218ENST00000486711 MAFKO60675 156 aa6.69□□□□□ -1.34
SMC4-218ENST00000486711 TADA3O75528 432 aa6.69□□□□□ -1.34
SMC4-218ENST00000486711 CYP1A1P04798 512 aaPredicted RBP6.69□□□□□ -1.34
SMC4-218ENST00000486711 SLC35F1Q5T1Q4 408 aa6.69□□□□□ -1.34
SMC4-218ENST00000486711 CPZQ66K79 652 aa6.69□□□□□ -1.34
SMC4-218ENST00000486711 SDE2Q6IQ49 451 aa6.69□□□□□ -1.34
SMC4-218ENST00000486711 TEPPQ6URK8 271 aa6.69□□□□□ -1.34
SMC4-218ENST00000486711 ARRDC4Q8NCT1 418 aa6.69□□□□□ -1.34
SMC4-218ENST00000486711 ST13P5Q8NFI4 369 aaPredicted RBP6.69□□□□□ -1.34
SMC4-218ENST00000486711 PHOSPHO1Q8TCT1 267 aa6.69□□□□□ -1.34
SMC4-218ENST00000486711 PPIL4Q8WUA2 492 aaKnown RBP eCLIP6.69□□□□□ -1.34
SMC4-218ENST00000486711 C1orf159Q96HA4 380 aa6.69□□□□□ -1.34
SMC4-218ENST00000486711 L2HGDHQ9H9P8 463 aa6.69□□□□□ -1.34
SMC4-218ENST00000486711 NPFFR2Q9Y5X5 522 aa6.69□□□□□ -1.34
SMC4-218ENST00000486711 CADPSQ9ULU8 1353 aa6.69□□□□□ -1.34
SMC4-218ENST00000486711 MAP4K2Q12851 820 aa6.68□□□□□ -1.34
SMC4-218ENST00000486711 SLC10A6Q3KNW5 377 aa6.68□□□□□ -1.34
SMC4-218ENST00000486711 DENND5AQ6IQ26 1287 aa6.68□□□□□ -1.34
SMC4-218ENST00000486711 GLB1LQ6UWU2 654 aa6.68□□□□□ -1.34
SMC4-218ENST00000486711 JAZF1Q86VZ6 243 aa6.68□□□□□ -1.34
SMC4-218ENST00000486711 KCTD13Q8WZ19 329 aa6.68□□□□□ -1.34
SMC4-218ENST00000486711 ZSWIM3Q96MP5 696 aa6.68□□□□□ -1.34
SMC4-218ENST00000486711 C8orf49Q96NF6 230 aa6.68□□□□□ -1.34
SMC4-218ENST00000486711 TMEM209Q96SK2 561 aa6.68□□□□□ -1.34
SMC4-218ENST00000486711 DNAJC7Q99615 494 aa6.68□□□□□ -1.34
SMC4-218ENST00000486711 C1QTNF3Q9BXJ4 246 aa6.68□□□□□ -1.34
SMC4-218ENST00000486711 MYOTQ9UBF9 498 aa6.68□□□□□ -1.34
SMC4-218ENST00000486711 MRPL42Q9Y6G3 142 aaKnown RBP6.68□□□□□ -1.34
SMC4-218ENST00000486711 LAMTOR5O43504 91 aa6.67□□□□□ -1.34
SMC4-218ENST00000486711 CYP4F22Q6NT55 531 aa6.67□□□□□ -1.34
SMC4-218ENST00000486711 CHST13Q8NET6 341 aa6.67□□□□□ -1.34
SMC4-218ENST00000486711 KRTAP3-1Q9BYR8 98 aa6.67□□□□□ -1.34
SMC4-218ENST00000486711 TMEM168Q9H0V1 697 aa6.67□□□□□ -1.34
SMC4-218ENST00000486711 SMOC1Q9H4F8 434 aa6.67□□□□□ -1.34
SMC4-218ENST00000486711 C1QTNF3-AMACRE9PGA6 284 aa6.66□□□□□ -1.34
SMC4-218ENST00000486711 KRIT1O00522 736 aa6.66□□□□□ -1.34
SMC4-218ENST00000486711 B4GALT3O60512 393 aa6.66□□□□□ -1.34
SMC4-218ENST00000486711 LRG1P02750 347 aa6.66□□□□□ -1.34
SMC4-218ENST00000486711 CAPNS1P04632 268 aa6.66□□□□□ -1.34
SMC4-218ENST00000486711 ZNF20P17024 532 aa6.66□□□□□ -1.34
SMC4-218ENST00000486711 IL13P35225 146 aa6.66□□□□□ -1.34
SMC4-218ENST00000486711 PPP2R2AP63151 447 aa6.66□□□□□ -1.34
SMC4-218ENST00000486711 ZNF669Q96BR6 464 aaPredicted RBP6.66□□□□□ -1.34
SMC4-218ENST00000486711 YTHDC1Q96MU7 727 aaKnown RBP6.66□□□□□ -1.34
SMC4-218ENST00000486711 SSBP3Q9BWW4 388 aaPredicted RBP6.66□□□□□ -1.34
SMC4-218ENST00000486711 GPR27Q9NS67 375 aa6.66□□□□□ -1.34
SMC4-218ENST00000486711 CROTQ9UKG9 612 aa6.66□□□□□ -1.34
SMC4-218ENST00000486711 IQCA1LA6NCM1 817 aa6.65□□□□□ -1.34
SMC4-218ENST00000486711 TNFRSF1AP19438 455 aa6.65□□□□□ -1.34
SMC4-218ENST00000486711 SSRP1Q08945 709 aaKnown RBP6.65□□□□□ -1.34
SMC4-218ENST00000486711 TRIM48Q8IWZ4 208 aa6.65□□□□□ -1.34
SMC4-218ENST00000486711 HSPBP1Q9NZL4 362 aa6.65□□□□□ -1.34
SMC4-218ENST00000486711 ASH2LQ9UBL3 628 aa6.65□□□□□ -1.34
SMC4-218ENST00000486711 FTSJ1Q9UET6 329 aa6.65□□□□□ -1.34
SMC4-218ENST00000486711 A0A1W2PQU0 124 aa6.64□□□□□ -1.35
SMC4-218ENST00000486711 GRIA2P42262 883 aa6.64□□□□□ -1.35
SMC4-218ENST00000486711 MLLT6P55198 1093 aaPredicted RBP6.64□□□□□ -1.35
SMC4-218ENST00000486711 RSPO2Q6UXX9 243 aaPredicted RBP6.64□□□□□ -1.35
SMC4-218ENST00000486711 LIMS2Q7Z4I7 341 aa6.64□□□□□ -1.35
SMC4-218ENST00000486711 LRRC47Q8N1G4 583 aaKnown RBP6.64□□□□□ -1.35
SMC4-218ENST00000486711 TTLL11Q8NHH1 800 aa6.64□□□□□ -1.35
SMC4-218ENST00000486711 SH3TC2Q8TF17 1288 aa6.64□□□□□ -1.35
SMC4-218ENST00000486711 ZCCHC14Q8WYQ9 949 aaKnown RBP6.64□□□□□ -1.35
SMC4-218ENST00000486711 DVL3Q92997 716 aaPredicted RBP6.64□□□□□ -1.35
SMC4-218ENST00000486711 MBD6Q96DN6 1003 aa6.64□□□□□ -1.35
SMC4-218ENST00000486711 RNPC3Q96LT9 517 aaKnown RBP6.64□□□□□ -1.35
SMC4-218ENST00000486711 IER2Q9BTL4 223 aa6.64□□□□□ -1.35
SMC4-218ENST00000486711 SLC6A20Q9NP91 592 aa6.64□□□□□ -1.35
SMC4-218ENST00000486711 PFDN2Q9UHV9 154 aa6.64□□□□□ -1.35
SMC4-218ENST00000486711 KDM2BQ8NHM5 1336 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms