RNA–Protein interactions for RNA: ENST00000485055.5

CCDC39-205, Transcript of coiled-coil domain containing 39, humanhuman

TSL 1 (best)

Gene CCDC39, Length 2,874 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-205ENST00000485055 ZAP70P43403 619 aa6.08□□□□□ -1.44
CCDC39-205ENST00000485055 MTMR2Q13614 643 aa6.08□□□□□ -1.44
CCDC39-205ENST00000485055 RRP1BQ14684 758 aaKnown RBP6.08□□□□□ -1.44
CCDC39-205ENST00000485055 CBX2Q14781 532 aaPredicted RBP6.08□□□□□ -1.44
CCDC39-205ENST00000485055 PPP2R5BQ15173 497 aa6.08□□□□□ -1.44
CCDC39-205ENST00000485055 EEPD1Q7L9B9 569 aa6.08□□□□□ -1.44
CCDC39-205ENST00000485055 STRA8Q7Z7C7 330 aa6.08□□□□□ -1.44
CCDC39-205ENST00000485055 TEX11Q8IYF3 940 aa6.08□□□□□ -1.44
CCDC39-205ENST00000485055 APPL2Q8NEU8 664 aa6.08□□□□□ -1.44
CCDC39-205ENST00000485055 ZNF180Q9UJW8 692 aa6.08□□□□□ -1.44
CCDC39-205ENST00000485055 PTCH2Q9Y6C5 1203 aa6.08□□□□□ -1.44
CCDC39-205ENST00000485055 IGKV6D-41A0A0C4DH26 115 aa6.07□□□□□ -1.44
CCDC39-205ENST00000485055 RCCD1A6NED2 376 aa6.07□□□□□ -1.44
CCDC39-205ENST00000485055 SMTNL1A8MU46 457 aa6.07□□□□□ -1.44
CCDC39-205ENST00000485055 GJB1P08034 283 aa6.07□□□□□ -1.44
CCDC39-205ENST00000485055 UBA7P41226 1012 aa6.07□□□□□ -1.44
CCDC39-205ENST00000485055 ALX1Q15699 326 aa6.07□□□□□ -1.44
CCDC39-205ENST00000485055 GPR153Q6NV75 609 aa6.07□□□□□ -1.44
CCDC39-205ENST00000485055 C1orf228Q6PIY5 440 aa6.07□□□□□ -1.44
CCDC39-205ENST00000485055 ITPRIPQ8IWB1 547 aa6.07□□□□□ -1.44
CCDC39-205ENST00000485055 TCEAL8Q8IYN2 117 aa6.07□□□□□ -1.44
CCDC39-205ENST00000485055 MB21D1Q8N884 522 aa6.07□□□□□ -1.44
CCDC39-205ENST00000485055 PJA1Q8NG27 643 aa6.07□□□□□ -1.44
CCDC39-205ENST00000485055 CD99L2Q8TCZ2 262 aa6.07□□□□□ -1.44
CCDC39-205ENST00000485055 LPAR1Q92633 364 aa6.07□□□□□ -1.44
CCDC39-205ENST00000485055 ANP32BQ92688 251 aaKnown RBP6.07□□□□□ -1.44
CCDC39-205ENST00000485055 OTUD5Q96G74 571 aa6.07□□□□□ -1.44
CCDC39-205ENST00000485055 TRIM47Q96LD4 638 aa6.07□□□□□ -1.44
CCDC39-205ENST00000485055 NBPF3Q9H094 633 aa6.07□□□□□ -1.44
CCDC39-205ENST00000485055 OSBPL3Q9H4L5 887 aa6.07□□□□□ -1.44
CCDC39-205ENST00000485055 XPO5Q9HAV4 1204 aaKnown RBP eCLIP6.07□□□□□ -1.44
CCDC39-205ENST00000485055 KBTBD4Q9NVX7 518 aa6.07□□□□□ -1.44
CCDC39-205ENST00000485055 FNIP2Q9P278 1114 aa6.07□□□□□ -1.44
CCDC39-205ENST00000485055 GOLGA6L6A8MZA4 724 aa6.07□□□□□ -1.44
CCDC39-205ENST00000485055 TNFRSF21O75509 655 aa6.07□□□□□ -1.44
CCDC39-205ENST00000485055 FAM13AO94988 1023 aa6.07□□□□□ -1.44
CCDC39-205ENST00000485055 HLA-DOAP06340 250 aa6.07□□□□□ -1.44
CCDC39-205ENST00000485055 GNAT2P19087 354 aa6.07□□□□□ -1.44
CCDC39-205ENST00000485055 GUCY1A2P33402 732 aa6.07□□□□□ -1.44
CCDC39-205ENST00000485055 SHMT1P34896 483 aa6.07□□□□□ -1.44
CCDC39-205ENST00000485055 EIF1AXP47813 144 aaKnown RBP6.07□□□□□ -1.44
CCDC39-205ENST00000485055 ITKQ08881 620 aa6.07□□□□□ -1.44
CCDC39-205ENST00000485055 PPP4R3BQ5MIZ7 849 aa6.07□□□□□ -1.44
CCDC39-205ENST00000485055 MFSD4BQ5TF39 518 aa6.07□□□□□ -1.44
CCDC39-205ENST00000485055 RCSD1Q6JBY9 416 aa6.07□□□□□ -1.44
CCDC39-205ENST00000485055 FAM180BQ6P0A1 224 aa6.07□□□□□ -1.44
CCDC39-205ENST00000485055 PI16Q6UXB8 463 aa6.07□□□□□ -1.44
CCDC39-205ENST00000485055 SPATC1Q76KD6 591 aa6.07□□□□□ -1.44
CCDC39-205ENST00000485055 ATCAYQ86WG3 371 aa6.07□□□□□ -1.44
CCDC39-205ENST00000485055 FAM169BQ8N8A8 192 aa6.07□□□□□ -1.44
CCDC39-205ENST00000485055 USP33Q8TEY7 942 aa6.07□□□□□ -1.44
CCDC39-205ENST00000485055 SOCS4Q8WXH5 440 aa6.07□□□□□ -1.44
CCDC39-205ENST00000485055 BORCS6Q96GS4 357 aa6.07□□□□□ -1.44
CCDC39-205ENST00000485055 FAM129BQ96TA1 746 aa6.07□□□□□ -1.44
CCDC39-205ENST00000485055 TRIM8Q9BZR9 551 aa6.07□□□□□ -1.44
CCDC39-205ENST00000485055 LRP2BPQ9P2M1 347 aa6.07□□□□□ -1.44
CCDC39-205ENST00000485055 GTF2IRD1Q9UHL9 959 aa6.07□□□□□ -1.44
CCDC39-205ENST00000485055 ZBTB21Q9ULJ3 1066 aa6.07□□□□□ -1.44
CCDC39-205ENST00000485055 SMC3Q9UQE7 1217 aa6.07□□□□□ -1.44
CCDC39-205ENST00000485055 RRP9O43818 475 aaKnown RBP6.06□□□□□ -1.44
CCDC39-205ENST00000485055 PDE6AP16499 860 aa6.06□□□□□ -1.44
CCDC39-205ENST00000485055 MAPK4P31152 587 aa6.06□□□□□ -1.44
CCDC39-205ENST00000485055 PPP2R5CQ13362 524 aa6.06□□□□□ -1.44
CCDC39-205ENST00000485055 TSHZ3Q63HK5 1081 aa6.06□□□□□ -1.44
CCDC39-205ENST00000485055 OLFML2BQ68BL8 750 aa6.06□□□□□ -1.44
CCDC39-205ENST00000485055 CATSPERGQ6ZRH7 1159 aa6.06□□□□□ -1.44
CCDC39-205ENST00000485055 LCA5Q86VQ0 697 aa6.06□□□□□ -1.44
CCDC39-205ENST00000485055 STRBPQ96SI9 672 aaKnown RBP6.06□□□□□ -1.44
CCDC39-205ENST00000485055 HERPUD2Q9BSE4 406 aa6.06□□□□□ -1.44
CCDC39-205ENST00000485055 AP1M1Q9BXS5 423 aa6.06□□□□□ -1.44
CCDC39-205ENST00000485055 RHOBTB2Q9BYZ6 727 aa6.06□□□□□ -1.44
CCDC39-205ENST00000485055 CRNKL1Q9BZJ0 848 aaKnown RBP6.06□□□□□ -1.44
CCDC39-205ENST00000485055 CNMDO75829 334 aa6.06□□□□□ -1.44
CCDC39-205ENST00000485055 BAIAP3O94812 1187 aa6.06□□□□□ -1.44
CCDC39-205ENST00000485055 PCP11498 1178 aaKnown RBP6.06□□□□□ -1.44
CCDC39-205ENST00000485055 NPR3P17342 541 aa6.06□□□□□ -1.44
CCDC39-205ENST00000485055 BMP8BP34820 402 aa6.06□□□□□ -1.44
CCDC39-205ENST00000485055 PEX19P40855 299 aa6.06□□□□□ -1.44
CCDC39-205ENST00000485055 SSR1P43307 286 aaKnown RBP6.06□□□□□ -1.44
CCDC39-205ENST00000485055 HTR3AP46098 478 aa6.06□□□□□ -1.44
CCDC39-205ENST00000485055 SNX16P57768 344 aa6.06□□□□□ -1.44
CCDC39-205ENST00000485055 BIRC3Q13489 604 aa6.06□□□□□ -1.44
CCDC39-205ENST00000485055 TCEA2Q15560 299 aa6.06□□□□□ -1.44
CCDC39-205ENST00000485055 LRRFIP1Q32MZ4 808 aaKnown RBP6.06□□□□□ -1.44
CCDC39-205ENST00000485055 TM4SF20Q53R12 229 aa6.06□□□□□ -1.44
CCDC39-205ENST00000485055 C12orf60Q5U649 245 aa6.06□□□□□ -1.44
CCDC39-205ENST00000485055 AGAP9Q5VTM2 703 aa6.06□□□□□ -1.44
CCDC39-205ENST00000485055 C1orf53Q5VUE5 145 aa6.06□□□□□ -1.44
CCDC39-205ENST00000485055 TRAF7Q6Q0C0 670 aa6.06□□□□□ -1.44
CCDC39-205ENST00000485055 CCDC81Q6ZN84 652 aa6.06□□□□□ -1.44
CCDC39-205ENST00000485055 RSRC2Q7L4I2 434 aaKnown RBP6.06□□□□□ -1.44
CCDC39-205ENST00000485055 RNF180Q86T96 592 aa6.06□□□□□ -1.44
CCDC39-205ENST00000485055 ARL10Q8N8L6 244 aa6.06□□□□□ -1.44
CCDC39-205ENST00000485055 FRAT1Q92837 279 aaPredicted RBP6.06□□□□□ -1.44
CCDC39-205ENST00000485055 CENPTQ96BT3 561 aa6.06□□□□□ -1.44
CCDC39-205ENST00000485055 VMP1Q96GC9 406 aa6.06□□□□□ -1.44
CCDC39-205ENST00000485055 SPON2Q9BUD6 331 aa6.06□□□□□ -1.44
CCDC39-205ENST00000485055 LRRCC1Q9C099 1032 aa6.06□□□□□ -1.44
CCDC39-205ENST00000485055 TLR7Q9NYK1 1049 aaKnown RBP6.06□□□□□ -1.44
CCDC39-205ENST00000485055 SERPINB13Q9UIV8 391 aa6.06□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms