RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 PSMD1Q99460 953 aa20.58■□□□□ 0.89
CCDC88B-207ENST00000479965 CCT8L1PA6NM43 557 aa20.58■□□□□ 0.88
CCDC88B-207ENST00000479965 EIF4E1BA6NMX2 242 aaKnown RBP20.58■□□□□ 0.88
CCDC88B-207ENST00000479965 KRIT1O00522 736 aa20.58■□□□□ 0.88
CCDC88B-207ENST00000479965 TLR2O60603 784 aa20.58■□□□□ 0.88
CCDC88B-207ENST00000479965 DRD4P21917 467 aa20.58■□□□□ 0.88
CCDC88B-207ENST00000479965 KLHL30Q0D2K2 578 aa20.58■□□□□ 0.88
CCDC88B-207ENST00000479965 CUL1Q13616 776 aa20.58■□□□□ 0.88
CCDC88B-207ENST00000479965 NBPF9Q3BBW0 867 aa20.58■□□□□ 0.88
CCDC88B-207ENST00000479965 MAGEC3Q8TD91 643 aa20.58■□□□□ 0.88
CCDC88B-207ENST00000479965 TBC1D22AQ8WUA7 517 aa20.58■□□□□ 0.88
CCDC88B-207ENST00000479965 CELF4Q9BZC1 486 aaKnown RBP20.58■□□□□ 0.88
CCDC88B-207ENST00000479965 WDR3Q9UNX4 943 aaKnown RBP eCLIP20.58■□□□□ 0.88
CCDC88B-207ENST00000479965 CHD4Q14839 1912 aa20.58■□□□□ 0.88
CCDC88B-207ENST00000479965 F8W031 263 aaPredicted RBP20.58■□□□□ 0.88
CCDC88B-207ENST00000479965 ORC4O43929 436 aa20.58■□□□□ 0.88
CCDC88B-207ENST00000479965 BIRC2Q13490 618 aa20.58■□□□□ 0.88
CCDC88B-207ENST00000479965 LACTB2Q53H82 288 aaPredicted RBP20.58■□□□□ 0.88
CCDC88B-207ENST00000479965 GLIS3Q8NEA6 775 aa20.58■□□□□ 0.88
CCDC88B-207ENST00000479965 MICAL1Q8TDZ2 1067 aa20.58■□□□□ 0.88
CCDC88B-207ENST00000479965 RTN2O75298 545 aa20.57■□□□□ 0.88
CCDC88B-207ENST00000479965 ANP32DO95626 131 aa20.57■□□□□ 0.88
CCDC88B-207ENST00000479965 SERPING1P05155 500 aa20.57■□□□□ 0.88
CCDC88B-207ENST00000479965 CENPPQ6IPU0 288 aa20.57■□□□□ 0.88
CCDC88B-207ENST00000479965 ARMC9Q7Z3E5 817 aa20.57■□□□□ 0.88
CCDC88B-207ENST00000479965 C3orf20Q8ND61 904 aa20.57■□□□□ 0.88
CCDC88B-207ENST00000479965 SWAP70Q9UH65 585 aa20.57■□□□□ 0.88
CCDC88B-207ENST00000479965 PCDHA6Q9UN73 950 aa20.57■□□□□ 0.88
CCDC88B-207ENST00000479965 PCDHA8Q9Y5H6 950 aa20.57■□□□□ 0.88
CCDC88B-207ENST00000479965 PARP4Q9UKK3 1724 aaKnown RBP20.57■□□□□ 0.88
CCDC88B-207ENST00000479965 ELAC2Q9BQ52 826 aaKnown RBP20.57■□□□□ 0.88
CCDC88B-207ENST00000479965 KDM4CQ9H3R0 1056 aa20.57■□□□□ 0.88
CCDC88B-207ENST00000479965 DNAJC8O75937 253 aaPredicted RBP20.56■□□□□ 0.88
CCDC88B-207ENST00000479965 VIMP08670 466 aaKnown RBP20.56■□□□□ 0.88
CCDC88B-207ENST00000479965 ITGA4P13612 1032 aa20.56■□□□□ 0.88
CCDC88B-207ENST00000479965 CALRP27797 417 aaKnown RBP20.56■□□□□ 0.88
CCDC88B-207ENST00000479965 KCNMA1Q12791 1236 aa20.56■□□□□ 0.88
CCDC88B-207ENST00000479965 ANKS1AQ92625 1134 aa20.56■□□□□ 0.88
CCDC88B-207ENST00000479965 XPO6Q96QU8 1125 aaKnown RBP20.56■□□□□ 0.88
CCDC88B-207ENST00000479965 KIF9Q9HAQ2 790 aa20.56■□□□□ 0.88
CCDC88B-207ENST00000479965 ANAPC4Q9UJX5 808 aa20.56■□□□□ 0.88
CCDC88B-207ENST00000479965 MYH2Q9UKX2 1941 aa20.56■□□□□ 0.88
CCDC88B-207ENST00000479965 C5orf60A6NFR6 353 aa20.56■□□□□ 0.88
CCDC88B-207ENST00000479965 TTI1O43156 1089 aa20.56■□□□□ 0.88
CCDC88B-207ENST00000479965 IFNAR2P48551 515 aa20.56■□□□□ 0.88
CCDC88B-207ENST00000479965 SARNPP82979 210 aaKnown RBP20.56■□□□□ 0.88
CCDC88B-207ENST00000479965 CCDC113Q9H0I3 377 aa20.56■□□□□ 0.88
CCDC88B-207ENST00000479965 TRAF5O00463 557 aa20.56■□□□□ 0.88
CCDC88B-207ENST00000479965 PPIP5K2O43314 1243 aa20.56■□□□□ 0.88
CCDC88B-207ENST00000479965 FGFR1OPO95684 399 aaKnown RBP20.56■□□□□ 0.88
CCDC88B-207ENST00000479965 MMEP08473 750 aa20.56■□□□□ 0.88
CCDC88B-207ENST00000479965 KIF5BP33176 963 aa20.56■□□□□ 0.88
CCDC88B-207ENST00000479965 UHMK1Q8TAS1 419 aaKnown RBP20.56■□□□□ 0.88
CCDC88B-207ENST00000479965 C7orf25Q9BPX7 421 aa20.56■□□□□ 0.88
CCDC88B-207ENST00000479965 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP20.56■□□□□ 0.88
CCDC88B-207ENST00000479965 TNS3Q68CZ2 1445 aa20.55■□□□□ 0.88
CCDC88B-207ENST00000479965 CAND2O75155 1236 aa20.55■□□□□ 0.88
CCDC88B-207ENST00000479965 TXKP42681 527 aa20.55■□□□□ 0.88
CCDC88B-207ENST00000479965 MTMR3Q13615 1198 aa20.55■□□□□ 0.88
CCDC88B-207ENST00000479965 SV2BQ7L1I2 683 aa20.55■□□□□ 0.88
CCDC88B-207ENST00000479965 ADAT2Q7Z6V5 191 aaKnown RBP20.55■□□□□ 0.88
CCDC88B-207ENST00000479965 CALML4Q96GE6 196 aa20.55■□□□□ 0.88
CCDC88B-207ENST00000479965 ASAP1Q9ULH1 1129 aa20.55■□□□□ 0.88
CCDC88B-207ENST00000479965 ATP6V0A2Q9Y487 856 aa20.55■□□□□ 0.88
CCDC88B-207ENST00000479965 PCDHGC5Q9Y5F6 944 aa20.55■□□□□ 0.88
CCDC88B-207ENST00000479965 ERVV-2B6SEH9 535 aa20.55■□□□□ 0.88
CCDC88B-207ENST00000479965 HGSO14964 777 aaPredicted RBP20.55■□□□□ 0.88
CCDC88B-207ENST00000479965 OR52Z1P0C646 297 aa20.55■□□□□ 0.88
CCDC88B-207ENST00000479965 CHN1P15882 459 aa20.55■□□□□ 0.88
CCDC88B-207ENST00000479965 SLC18A3Q16572 532 aa20.55■□□□□ 0.88
CCDC88B-207ENST00000479965 AGBL2Q5U5Z8 902 aa20.55■□□□□ 0.88
CCDC88B-207ENST00000479965 CDK5RAP3Q96JB5 506 aa20.55■□□□□ 0.88
CCDC88B-207ENST00000479965 CD2APQ9Y5K6 639 aa20.55■□□□□ 0.88
CCDC88B-207ENST00000479965 FLT1P17948 1338 aa20.55■□□□□ 0.88
CCDC88B-207ENST00000479965 KIF4AO95239 1232 aa20.54■□□□□ 0.88
CCDC88B-207ENST00000479965 PPP1R2P41236 205 aa20.54■□□□□ 0.88
CCDC88B-207ENST00000479965 HOOK2Q96ED9 719 aa20.54■□□□□ 0.88
CCDC88B-207ENST00000479965 NOC2LQ9Y3T9 749 aaKnown RBP20.54■□□□□ 0.88
CCDC88B-207ENST00000479965 PCDH11XQ9BZA7 1347 aa20.54■□□□□ 0.88
CCDC88B-207ENST00000479965 PCDH11YQ9BZA8 1340 aa20.54■□□□□ 0.88
CCDC88B-207ENST00000479965 ENO4A6NNW6 628 aa20.54■□□□□ 0.88
CCDC88B-207ENST00000479965 CLSTN1O94985 981 aa20.54■□□□□ 0.88
CCDC88B-207ENST00000479965 CYP2D6P10635 497 aa20.54■□□□□ 0.88
CCDC88B-207ENST00000479965 CUEDC2Q9H467 287 aa20.54■□□□□ 0.88
CCDC88B-207ENST00000479965 PANK4Q9NVE7 773 aa20.54■□□□□ 0.88
CCDC88B-207ENST00000479965 TBC1D7Q9P0N9 293 aa20.54■□□□□ 0.88
CCDC88B-207ENST00000479965 SAMD15Q9P1V8 674 aa20.54■□□□□ 0.88
CCDC88B-207ENST00000479965 MYMKA6NI61 221 aa20.53■□□□□ 0.88
CCDC88B-207ENST00000479965 PGRMC1O00264 195 aaKnown RBP20.53■□□□□ 0.88
CCDC88B-207ENST00000479965 DIAPH2O60879 1101 aa20.53■□□□□ 0.88
CCDC88B-207ENST00000479965 EPS15P42566 896 aa20.53■□□□□ 0.88
CCDC88B-207ENST00000479965 GYG1P46976 350 aa20.53■□□□□ 0.88
CCDC88B-207ENST00000479965 ZKSCAN8Q15776 578 aaPredicted RBP20.53■□□□□ 0.88
CCDC88B-207ENST00000479965 TMC3Q7Z5M5 1100 aa20.53■□□□□ 0.88
CCDC88B-207ENST00000479965 LMBR1Q8WVP7 490 aa20.53■□□□□ 0.88
CCDC88B-207ENST00000479965 CPVLQ9H3G5 476 aa20.53■□□□□ 0.88
CCDC88B-207ENST00000479965 PRPF4BQ13523 1007 aaKnown RBP20.53■□□□□ 0.88
CCDC88B-207ENST00000479965 NUP188Q5SRE5 1749 aa20.53■□□□□ 0.88
CCDC88B-207ENST00000479965 AGAP11Q8TF27 550 aa20.53■□□□□ 0.88
CCDC88B-207ENST00000479965 P3H4Q92791 437 aa20.53■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms