RNA–Protein interactions for RNA: ENST00000473373.1

CPNE1-222, Transcript of copine 1, human

TSL 2

Gene CPNE1, Length 821 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-222	ENST00000473373	SMAD3	P84022	425 aa	Known RBP	13.18	□□□□□ -0.3
CPNE1-222	ENST00000473373	SSRP1	Q08945	709 aa	Known RBP	13.18	□□□□□ -0.3
CPNE1-222	ENST00000473373	MTMR1	Q13613	665 aa		13.18	□□□□□ -0.3
CPNE1-222	ENST00000473373	HSDL1	Q3SXM5	330 aa		13.18	□□□□□ -0.3
CPNE1-222	ENST00000473373	DEFB128	Q7Z7B8	93 aa		13.18	□□□□□ -0.3
CPNE1-222	ENST00000473373	CCDC148	Q8NFR7	591 aa		13.18	□□□□□ -0.3
CPNE1-222	ENST00000473373	EMID1	Q96A84	441 aa	Predicted RBP	13.18	□□□□□ -0.3
CPNE1-222	ENST00000473373	SCLY	Q96I15	445 aa		13.18	□□□□□ -0.3
CPNE1-222	ENST00000473373	LARP6	Q9BRS8	491 aa	Known RBP	13.18	□□□□□ -0.3
CPNE1-222	ENST00000473373	ANO3	Q9BYT9	981 aa		13.18	□□□□□ -0.3
CPNE1-222	ENST00000473373	FTO	Q9C0B1	505 aa	Known RBP eCLIP	13.18	□□□□□ -0.3
CPNE1-222	ENST00000473373	ZSWIM6	Q9HCJ5	1215 aa		13.18	□□□□□ -0.3
CPNE1-222	ENST00000473373	BARHL2	Q9NY43	387 aa		13.18	□□□□□ -0.3
CPNE1-222	ENST00000473373	TCEAL9	Q9UHQ7	104 aa		13.18	□□□□□ -0.3
CPNE1-222	ENST00000473373	ZNF215	Q9UL58	517 aa	Predicted RBP	13.18	□□□□□ -0.3
CPNE1-222	ENST00000473373	UMODL1	Q5DID0	1318 aa		13.17	□□□□□ -0.3
CPNE1-222	ENST00000473373	MYO9B	Q13459	2157 aa		13.17	□□□□□ -0.3
CPNE1-222	ENST00000473373	FGB	P02675	491 aa		13.17	□□□□□ -0.3
CPNE1-222	ENST00000473373	GNA11	P29992	359 aa		13.17	□□□□□ -0.3
CPNE1-222	ENST00000473373	SP2	Q02086	613 aa		13.17	□□□□□ -0.3
CPNE1-222	ENST00000473373	PFKFB3	Q16875	520 aa	Predicted RBP	13.17	□□□□□ -0.3
CPNE1-222	ENST00000473373	JAKMIP3	Q5VZ66	844 aa		13.17	□□□□□ -0.3
CPNE1-222	ENST00000473373	METTL7B	Q6UX53	244 aa		13.17	□□□□□ -0.3
CPNE1-222	ENST00000473373	GPRASP2	Q96D09	838 aa		13.17	□□□□□ -0.3
CPNE1-222	ENST00000473373	INPP4A	Q96PE3	977 aa	Predicted RBP	13.17	□□□□□ -0.3
CPNE1-222	ENST00000473373	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	13.17	□□□□□ -0.3	2e-6	■□□□□ 9.9
CPNE1-222	ENST00000473373	SDF4	Q9BRK5	362 aa		13.17	□□□□□ -0.3
CPNE1-222	ENST00000473373	NOC4L	Q9BVI4	516 aa	Known RBP	13.17	□□□□□ -0.3
CPNE1-222	ENST00000473373	NCOA5	Q9HCD5	579 aa	Known RBP	13.17	□□□□□ -0.3
CPNE1-222	ENST00000473373	IL23A	Q9NPF7	189 aa		13.17	□□□□□ -0.3
CPNE1-222	ENST00000473373	HDAC6	Q9UBN7	1215 aa		13.17	□□□□□ -0.3
CPNE1-222	ENST00000473373	WDR81	Q562E7	1941 aa		13.16	□□□□□ -0.3
CPNE1-222	ENST00000473373	SPATA31C2	B4DYI2	1134 aa		13.16	□□□□□ -0.3
CPNE1-222	ENST00000473373	PRPF3	O43395	683 aa	Known RBP	13.16	□□□□□ -0.3
CPNE1-222	ENST00000473373	ACTN1	P12814	892 aa		13.16	□□□□□ -0.3
CPNE1-222	ENST00000473373	PDIA3	P30101	505 aa	Known RBP	13.16	□□□□□ -0.3
CPNE1-222	ENST00000473373	ICAM3	P32942	547 aa		13.16	□□□□□ -0.3
CPNE1-222	ENST00000473373	NLRP5	P59047	1200 aa		13.16	□□□□□ -0.3
CPNE1-222	ENST00000473373	AP3B2	Q13367	1082 aa		13.16	□□□□□ -0.3
CPNE1-222	ENST00000473373	GDF6	Q6KF10	455 aa	Predicted RBP	13.16	□□□□□ -0.3
CPNE1-222	ENST00000473373	ZNF365	Q70YC5	407 aa		13.16	□□□□□ -0.3
CPNE1-222	ENST00000473373	OTOP2	Q7RTS6	562 aa		13.16	□□□□□ -0.3
CPNE1-222	ENST00000473373	REXO1	Q8N1G1	1221 aa	Known RBP	13.16	□□□□□ -0.3
CPNE1-222	ENST00000473373	BICD2	Q8TD16	824 aa		13.16	□□□□□ -0.3
CPNE1-222	ENST00000473373	RNF26	Q9BY78	433 aa	Predicted RBP	13.16	□□□□□ -0.3
CPNE1-222	ENST00000473373	TM6SF1	Q9BZW5	370 aa		13.16	□□□□□ -0.3
CPNE1-222	ENST00000473373	SLK	Q9H2G2	1235 aa	Predicted RBP	13.16	□□□□□ -0.3
CPNE1-222	ENST00000473373	PRDM6	Q9NQX0	595 aa		13.16	□□□□□ -0.3
CPNE1-222	ENST00000473373	FAM217B	Q9NTX9	383 aa	Predicted RBP	13.16	□□□□□ -0.3
CPNE1-222	ENST00000473373	TMEM260	Q9NX78	707 aa		13.16	□□□□□ -0.3
CPNE1-222	ENST00000473373	HSFX4	A0A1B0GTS1	333 aa	Predicted RBP	13.15	□□□□□ -0.3
CPNE1-222	ENST00000473373	HSFX3	A0A1B0GWH4	333 aa	Predicted RBP	13.15	□□□□□ -0.3
CPNE1-222	ENST00000473373	C17orf102	A2RUQ5	167 aa		13.15	□□□□□ -0.3
CPNE1-222	ENST00000473373		H3BRB1	525 aa		13.15	□□□□□ -0.3
CPNE1-222	ENST00000473373	CDKL5	O76039	1030 aa		13.15	□□□□□ -0.3
CPNE1-222	ENST00000473373	F2	P00734	622 aa		13.15	□□□□□ -0.3
CPNE1-222	ENST00000473373	LGALS2	P05162	132 aa		13.15	□□□□□ -0.3
CPNE1-222	ENST00000473373	TOB2	Q14106	344 aa	Predicted RBP	13.15	□□□□□ -0.3
CPNE1-222	ENST00000473373	ANKRD1	Q15327	319 aa		13.15	□□□□□ -0.3
CPNE1-222	ENST00000473373	MCTP2	Q6DN12	878 aa		13.15	□□□□□ -0.3
CPNE1-222	ENST00000473373	CAGE1	Q8TC20	777 aa		13.15	□□□□□ -0.3
CPNE1-222	ENST00000473373	GLG1	Q92896	1179 aa		13.15	□□□□□ -0.3
CPNE1-222	ENST00000473373	TUT1	Q9H6E5	874 aa	Known RBP	13.15	□□□□□ -0.3
CPNE1-222	ENST00000473373	GTF2IRD1	Q9UHL9	959 aa		13.15	□□□□□ -0.3
CPNE1-222	ENST00000473373	LOXHD1	Q8IVV2	1947 aa		13.15	□□□□□ -0.3
CPNE1-222	ENST00000473373	EYS	Q5T1H1	3165 aa		13.14	□□□□□ -0.31
CPNE1-222	ENST00000473373	DDX39A	O00148	427 aa	Known RBP	13.14	□□□□□ -0.31
CPNE1-222	ENST00000473373	PFKM	P08237	780 aa		13.14	□□□□□ -0.31
CPNE1-222	ENST00000473373	GNAT1	P11488	350 aa		13.14	□□□□□ -0.31
CPNE1-222	ENST00000473373	IFNAR1	P17181	557 aa		13.14	□□□□□ -0.31
CPNE1-222	ENST00000473373	TCF7	P36402	384 aa	Predicted RBP	13.14	□□□□□ -0.31
CPNE1-222	ENST00000473373	FUT2	Q10981	343 aa		13.14	□□□□□ -0.31
CPNE1-222	ENST00000473373	GRIN2C	Q14957	1233 aa		13.14	□□□□□ -0.31
CPNE1-222	ENST00000473373	TMEM240	Q5SV17	173 aa		13.14	□□□□□ -0.31
CPNE1-222	ENST00000473373	TYW1B	Q6NUM6	668 aa		13.14	□□□□□ -0.31
CPNE1-222	ENST00000473373	FBXL16	Q8N461	479 aa		13.14	□□□□□ -0.31
CPNE1-222	ENST00000473373	KAT2B	Q92831	832 aa		13.14	□□□□□ -0.31
CPNE1-222	ENST00000473373	ATP6V0A1	Q93050	837 aa		13.14	□□□□□ -0.31
CPNE1-222	ENST00000473373	ZNF274	Q96GC6	653 aa	Predicted RBP	13.14	□□□□□ -0.31
CPNE1-222	ENST00000473373	SENP7	Q9BQF6	1050 aa		13.14	□□□□□ -0.31
CPNE1-222	ENST00000473373	MXRA8	Q9BRK3	442 aa		13.14	□□□□□ -0.31
CPNE1-222	ENST00000473373	AGXT2	Q9BYV1	514 aa		13.14	□□□□□ -0.31
CPNE1-222	ENST00000473373	WNT8A	Q9H1J5	351 aa		13.14	□□□□□ -0.31
CPNE1-222	ENST00000473373	AZI2	Q9H6S1	392 aa		13.14	□□□□□ -0.31
CPNE1-222	ENST00000473373	JADE2	Q9NQC1	790 aa		13.14	□□□□□ -0.31
CPNE1-222	ENST00000473373	VPS54	Q9P1Q0	977 aa		13.14	□□□□□ -0.31
CPNE1-222	ENST00000473373	NID2	Q14112	1375 aa		13.14	□□□□□ -0.31
CPNE1-222	ENST00000473373	EVPL	Q92817	2033 aa		13.13	□□□□□ -0.31
CPNE1-222	ENST00000473373	TET1	Q8NFU7	2136 aa		13.13	□□□□□ -0.31
CPNE1-222	ENST00000473373	PITPNM1	O00562	1244 aa		13.13	□□□□□ -0.31
CPNE1-222	ENST00000473373	MAFG	O15525	162 aa		13.13	□□□□□ -0.31
CPNE1-222	ENST00000473373	DEXI	O95424	95 aa		13.13	□□□□□ -0.31
CPNE1-222	ENST00000473373	XBP1	P17861	261 aa		13.13	□□□□□ -0.31
CPNE1-222	ENST00000473373	MARK3	P27448	753 aa		13.13	□□□□□ -0.31
CPNE1-222	ENST00000473373	RFC2	P35250	354 aa		13.13	□□□□□ -0.31
CPNE1-222	ENST00000473373	ANAPC15	P60006	121 aa		13.13	□□□□□ -0.31
CPNE1-222	ENST00000473373	ARHGAP4	P98171	946 aa		13.13	□□□□□ -0.31
CPNE1-222	ENST00000473373	SEMA3F	Q13275	785 aa		13.13	□□□□□ -0.31
CPNE1-222	ENST00000473373	SESTD1	Q86VW0	696 aa		13.13	□□□□□ -0.31
CPNE1-222	ENST00000473373	PLA2G4D	Q86XP0	818 aa		13.13	□□□□□ -0.31

Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms