RNA–Protein interactions for RNA: ENST00000471246.1

UBXN4-207, Transcript of UBX domain protein 4, humanhuman

TSL 3

Gene UBXN4, Length 395 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBXN4-207ENST00000471246 ITGB6P18564 788 aa2.32□□□□□ -2.04
UBXN4-207ENST00000471246 STAT5AP42229 794 aa2.32□□□□□ -2.04
UBXN4-207ENST00000471246 RAB33AQ14088 237 aa2.32□□□□□ -2.04
UBXN4-207ENST00000471246 KRTAP15-1Q3LI76 137 aa2.32□□□□□ -2.04
UBXN4-207ENST00000471246 USP53Q70EK8 1073 aa2.32□□□□□ -2.04
UBXN4-207ENST00000471246 CEP68Q76N32 757 aa2.32□□□□□ -2.04
UBXN4-207ENST00000471246 FAM126BQ8IXS8 530 aa2.32□□□□□ -2.04
UBXN4-207ENST00000471246 ZNF526Q8TF50 670 aaPredicted RBP2.32□□□□□ -2.04
UBXN4-207ENST00000471246 ZBTB8AQ96BR9 441 aa2.32□□□□□ -2.04
UBXN4-207ENST00000471246 TMEM169Q96HH4 297 aa2.32□□□□□ -2.04
UBXN4-207ENST00000471246 SGSM3Q96HU1 749 aa2.32□□□□□ -2.04
UBXN4-207ENST00000471246 CHAMP1Q96JM3 812 aa2.32□□□□□ -2.04
UBXN4-207ENST00000471246 SYT3Q9BQG1 590 aa2.32□□□□□ -2.04
UBXN4-207ENST00000471246 GORASP1Q9BQQ3 440 aa2.32□□□□□ -2.04
UBXN4-207ENST00000471246 YIPF4Q9BSR8 244 aa2.32□□□□□ -2.04
UBXN4-207ENST00000471246 AARSD1Q9BTE6 412 aaKnown RBP2.32□□□□□ -2.04
UBXN4-207ENST00000471246 TRIM55Q9BYV6 548 aa2.32□□□□□ -2.04
UBXN4-207ENST00000471246 ARHGEF4Q9NR80 690 aa2.32□□□□□ -2.04
UBXN4-207ENST00000471246 CLDND1Q9NY35 253 aa2.32□□□□□ -2.04
UBXN4-207ENST00000471246 ZNF652Q9Y2D9 606 aa2.32□□□□□ -2.04
UBXN4-207ENST00000471246 PCDHB4Q9Y5E5 795 aa2.32□□□□□ -2.04
UBXN4-207ENST00000471246 PCDHA2Q9Y5H9 948 aa2.32□□□□□ -2.04
UBXN4-207ENST00000471246 NPFFR2Q9Y5X5 522 aa2.32□□□□□ -2.04
UBXN4-207ENST00000471246 IQCA1LA6NCM1 817 aa2.31□□□□□ -2.04
UBXN4-207ENST00000471246 H7BY64 318 aa2.31□□□□□ -2.04
UBXN4-207ENST00000471246 MSCO60682 206 aa2.31□□□□□ -2.04
UBXN4-207ENST00000471246 FGFR1P11362 822 aa2.31□□□□□ -2.04
UBXN4-207ENST00000471246 THBS2P35442 1172 aa2.31□□□□□ -2.04
UBXN4-207ENST00000471246 ITGA1P56199 1179 aa2.31□□□□□ -2.04
UBXN4-207ENST00000471246 LSAMPQ13449 338 aa2.31□□□□□ -2.04
UBXN4-207ENST00000471246 SMAD4Q13485 552 aaKnown RBP2.31□□□□□ -2.04
UBXN4-207ENST00000471246 HSP90AA2PQ14568 343 aaPredicted RBP2.31□□□□□ -2.04
UBXN4-207ENST00000471246 CHRNA2Q15822 529 aa2.31□□□□□ -2.04
UBXN4-207ENST00000471246 EMC4Q5J8M3 183 aa2.31□□□□□ -2.04
UBXN4-207ENST00000471246 STEAP3Q658P3 488 aa2.31□□□□□ -2.04
UBXN4-207ENST00000471246 DPY19L2P1Q6NXN4 242 aa2.31□□□□□ -2.04
UBXN4-207ENST00000471246 MILR1Q7Z6M3 343 aa2.31□□□□□ -2.04
UBXN4-207ENST00000471246 ZC3H18Q86VM9 953 aaKnown RBP2.31□□□□□ -2.04
UBXN4-207ENST00000471246 CKAP2LQ8IYA6 745 aa2.31□□□□□ -2.04
UBXN4-207ENST00000471246 CARFQ8N187 725 aa2.31□□□□□ -2.04
UBXN4-207ENST00000471246 FAM26EQ8N5C1 309 aa2.31□□□□□ -2.04
UBXN4-207ENST00000471246 ST13P5Q8NFI4 369 aaPredicted RBP2.31□□□□□ -2.04
UBXN4-207ENST00000471246 NTN5Q8WTR8 489 aaPredicted RBP2.31□□□□□ -2.04
UBXN4-207ENST00000471246 OSBP2Q969R2 916 aa2.31□□□□□ -2.04
UBXN4-207ENST00000471246 C11orf84Q9BUA3 381 aaPredicted RBP2.31□□□□□ -2.04
UBXN4-207ENST00000471246 PHF20Q9BVI0 1012 aa2.31□□□□□ -2.04
UBXN4-207ENST00000471246 TANGO6Q9C0B7 1094 aa2.31□□□□□ -2.04
UBXN4-207ENST00000471246 EPB41L1Q9H4G0 881 aa2.31□□□□□ -2.04
UBXN4-207ENST00000471246 GPR27Q9NS67 375 aa2.31□□□□□ -2.04
UBXN4-207ENST00000471246 SPATA6Q9NWH7 488 aaPredicted RBP2.31□□□□□ -2.04
UBXN4-207ENST00000471246 NTMQ9P121 344 aa2.31□□□□□ -2.04
UBXN4-207ENST00000471246 PPARGC1AQ9UBK2 798 aaKnown RBP2.31□□□□□ -2.04
UBXN4-207ENST00000471246 MSRB2Q9Y3D2 182 aa2.31□□□□□ -2.04
UBXN4-207ENST00000471246 TRAV20A0A0B4J274 112 aa2.3□□□□□ -2.04
UBXN4-207ENST00000471246 TCRBV5S2A0A599 114 aa2.3□□□□□ -2.04
UBXN4-207ENST00000471246 CCDC85CA6NKD9 419 aa2.3□□□□□ -2.04
UBXN4-207ENST00000471246 HGSO14964 777 aaPredicted RBP2.3□□□□□ -2.04
UBXN4-207ENST00000471246 U2SURPO15042 1029 aaKnown RBP2.3□□□□□ -2.04
UBXN4-207ENST00000471246 PDPK1O15530 556 aa2.3□□□□□ -2.04
UBXN4-207ENST00000471246 PRODHO43272 600 aa2.3□□□□□ -2.04
UBXN4-207ENST00000471246 SMARCA5O60264 1052 aaPredicted RBP2.3□□□□□ -2.04
UBXN4-207ENST00000471246 DGKIO75912 1065 aa2.3□□□□□ -2.04
UBXN4-207ENST00000471246 PABPC1P11940 636 aaKnown RBP2.3□□□□□ -2.04
UBXN4-207ENST00000471246 GRK2P25098 689 aa2.3□□□□□ -2.04
UBXN4-207ENST00000471246 GRK3P35626 688 aa2.3□□□□□ -2.04
UBXN4-207ENST00000471246 GJA9P57773 515 aa2.3□□□□□ -2.04
UBXN4-207ENST00000471246 NTRK3Q16288 839 aa2.3□□□□□ -2.04
UBXN4-207ENST00000471246 CR1LQ2VPA4 569 aa2.3□□□□□ -2.04
UBXN4-207ENST00000471246 YOD1Q5VVQ6 348 aaPredicted RBP2.3□□□□□ -2.04
UBXN4-207ENST00000471246 KCNT2Q6UVM3 1135 aa2.3□□□□□ -2.04
UBXN4-207ENST00000471246 RSPO2Q6UXX9 243 aaPredicted RBP2.3□□□□□ -2.04
UBXN4-207ENST00000471246 CD300LDQ6UXZ3 194 aa2.3□□□□□ -2.04
UBXN4-207ENST00000471246 SPATC1Q76KD6 591 aa2.3□□□□□ -2.04
UBXN4-207ENST00000471246 STK32CQ86UX6 486 aa2.3□□□□□ -2.04
UBXN4-207ENST00000471246 ZNF761Q86XN6 746 aaPredicted RBP2.3□□□□□ -2.04
UBXN4-207ENST00000471246 LRRC47Q8N1G4 583 aaKnown RBP2.3□□□□□ -2.04
UBXN4-207ENST00000471246 LINC00482Q8N8I6 264 aa2.3□□□□□ -2.04
UBXN4-207ENST00000471246 KYQ8NBH2 561 aa2.3□□□□□ -2.04
UBXN4-207ENST00000471246 ARRDC4Q8NCT1 418 aa2.3□□□□□ -2.04
UBXN4-207ENST00000471246 PPIL4Q8WUA2 492 aaKnown RBP eCLIP2.3□□□□□ -2.04
UBXN4-207ENST00000471246 ZSWIM3Q96MP5 696 aa2.3□□□□□ -2.04
UBXN4-207ENST00000471246 C8orf37Q96NL8 207 aa2.3□□□□□ -2.04
UBXN4-207ENST00000471246 CDIP1Q9H305 208 aa2.3□□□□□ -2.04
UBXN4-207ENST00000471246 PCDH18Q9HCL0 1135 aa2.3□□□□□ -2.04
UBXN4-207ENST00000471246 DTLQ9NZJ0 730 aa2.3□□□□□ -2.04
UBXN4-207ENST00000471246 MYOTQ9UBF9 498 aa2.3□□□□□ -2.04
UBXN4-207ENST00000471246 BLACEA4D250 179 aa2.29□□□□□ -2.04
UBXN4-207ENST00000471246 KRIT1O00522 736 aa2.29□□□□□ -2.04
UBXN4-207ENST00000471246 ADCY3O60266 1144 aa2.29□□□□□ -2.04
UBXN4-207ENST00000471246 MAFKO60675 156 aa2.29□□□□□ -2.04
UBXN4-207ENST00000471246 TADA3O75528 432 aa2.29□□□□□ -2.04
UBXN4-207ENST00000471246 ERBB2P04626 1255 aa2.29□□□□□ -2.04
UBXN4-207ENST00000471246 ATP2B1P20020 1258 aa2.29□□□□□ -2.04
UBXN4-207ENST00000471246 RPL13P26373 211 aaKnown RBP2.29□□□□□ -2.04
UBXN4-207ENST00000471246 SARSP49591 514 aaKnown RBP2.29□□□□□ -2.04
UBXN4-207ENST00000471246 GPR85P60893 370 aa2.29□□□□□ -2.04
UBXN4-207ENST00000471246 NKX3-2P78367 333 aa2.29□□□□□ -2.04
UBXN4-207ENST00000471246 SSRP1Q08945 709 aaKnown RBP2.29□□□□□ -2.04
UBXN4-207ENST00000471246 IFRD2Q12894 506 aaPredicted RBP2.29□□□□□ -2.04
UBXN4-207ENST00000471246 ADAM9Q13443 819 aa2.29□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms