RNA–Protein interactions for RNA: ENST00000470268.1

SF3B1-208, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 2,003 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-208ENST00000470268 MTMR4Q9NYA4 1195 aa5.53□□□□□ -1.52
SF3B1-208ENST00000470268 KIAA1522Q9P206 1035 aaPredicted RBP5.53□□□□□ -1.52
SF3B1-208ENST00000470268 ZBTB21Q9ULJ3 1066 aa5.53□□□□□ -1.52
SF3B1-208ENST00000470268 ANGEL1Q9UNK9 670 aaKnown RBP5.53□□□□□ -1.52
SF3B1-208ENST00000470268 KCNH4Q9UQ05 1017 aa5.53□□□□□ -1.52
SF3B1-208ENST00000470268 CTNND1O60716 968 aaKnown RBP5.52□□□□□ -1.53
SF3B1-208ENST00000470268 XYLBO75191 536 aa5.52□□□□□ -1.53
SF3B1-208ENST00000470268 SPATA31C1P0DKV0 1188 aa5.52□□□□□ -1.53
SF3B1-208ENST00000470268 EEF2P13639 858 aaKnown RBP5.52□□□□□ -1.53
SF3B1-208ENST00000470268 RXRAP19793 462 aa5.52□□□□□ -1.53
SF3B1-208ENST00000470268 ECE1P42892 770 aa5.52□□□□□ -1.53
SF3B1-208ENST00000470268 EVCP57679 992 aa5.52□□□□□ -1.53
SF3B1-208ENST00000470268 ATP2B2Q01814 1243 aa5.52□□□□□ -1.53
SF3B1-208ENST00000470268 TAGLNQ01995 201 aaKnown RBP5.52□□□□□ -1.53
SF3B1-208ENST00000470268 TNP2Q05952 138 aa5.52□□□□□ -1.53
SF3B1-208ENST00000470268 RAB3GAP1Q15042 981 aa5.52□□□□□ -1.53
SF3B1-208ENST00000470268 ME3Q16798 604 aa5.52□□□□□ -1.53
SF3B1-208ENST00000470268 DCAF15Q66K64 600 aa5.52□□□□□ -1.53
SF3B1-208ENST00000470268 ALG1LQ6GMV1 187 aa5.52□□□□□ -1.53
SF3B1-208ENST00000470268 TMEM179Q6ZVK1 233 aa5.52□□□□□ -1.53
SF3B1-208ENST00000470268 ZNF438Q7Z4V0 828 aa5.52□□□□□ -1.53
SF3B1-208ENST00000470268 SGMS1Q86VZ5 419 aa5.52□□□□□ -1.53
SF3B1-208ENST00000470268 DGKHQ86XP1 1220 aa5.52□□□□□ -1.53
SF3B1-208ENST00000470268 ACER1Q8TDN7 264 aa5.52□□□□□ -1.53
SF3B1-208ENST00000470268 FBF1Q8TES7 1133 aa5.52□□□□□ -1.53
SF3B1-208ENST00000470268 ANKS1AQ92625 1134 aa5.52□□□□□ -1.53
SF3B1-208ENST00000470268 SNX21Q969T3 373 aa5.52□□□□□ -1.53
SF3B1-208ENST00000470268 CHMP4CQ96CF2 233 aa5.52□□□□□ -1.53
SF3B1-208ENST00000470268 CLMNQ96JQ2 1002 aa5.52□□□□□ -1.53
SF3B1-208ENST00000470268 TMEM47Q9BQJ4 181 aa5.52□□□□□ -1.53
SF3B1-208ENST00000470268 UBAC1Q9BSL1 405 aa5.52□□□□□ -1.53
SF3B1-208ENST00000470268 MTA3Q9BTC8 594 aa5.52□□□□□ -1.53
SF3B1-208ENST00000470268 ZNF341Q9BYN7 854 aa5.52□□□□□ -1.53
SF3B1-208ENST00000470268 ZNF408Q9H9D4 720 aa5.52□□□□□ -1.53
SF3B1-208ENST00000470268 STX8Q9UNK0 236 aa5.52□□□□□ -1.53
SF3B1-208ENST00000470268 POLR2AP24928 1970 aaKnown RBP5.52□□□□□ -1.53
SF3B1-208ENST00000470268 PNMA6FA0A0J9YX94 578 aa5.52□□□□□ -1.53
SF3B1-208ENST00000470268 KLF18A0A0U1RQI7 1052 aa5.52□□□□□ -1.53
SF3B1-208ENST00000470268 A6NHS1 94 aa5.52□□□□□ -1.53
SF3B1-208ENST00000470268 UBE2Q2LH0YL09 131 aa5.52□□□□□ -1.53
SF3B1-208ENST00000470268 TNFRSF21O75509 655 aa5.52□□□□□ -1.53
SF3B1-208ENST00000470268 PTPRAP18433 802 aa5.52□□□□□ -1.53
SF3B1-208ENST00000470268 PDIA3P30101 505 aaKnown RBP5.52□□□□□ -1.53
SF3B1-208ENST00000470268 TROAPQ12815 778 aa5.52□□□□□ -1.53
SF3B1-208ENST00000470268 VGLL4Q14135 290 aa5.52□□□□□ -1.53
SF3B1-208ENST00000470268 WTAPQ15007 396 aa5.52□□□□□ -1.53
SF3B1-208ENST00000470268 MAP3K11Q16584 847 aa5.52□□□□□ -1.53
SF3B1-208ENST00000470268 KIAA1755Q5JYT7 1200 aa5.52□□□□□ -1.53
SF3B1-208ENST00000470268 IFIT1BQ5T764 474 aaKnown RBP5.52□□□□□ -1.53
SF3B1-208ENST00000470268 APOA5Q6Q788 366 aa5.52□□□□□ -1.53
SF3B1-208ENST00000470268 SCYL3Q8IZE3 742 aa5.52□□□□□ -1.53
SF3B1-208ENST00000470268 LRRC47Q8N1G4 583 aaKnown RBP5.52□□□□□ -1.53
SF3B1-208ENST00000470268 NECAB1Q8N987 351 aa5.52□□□□□ -1.53
SF3B1-208ENST00000470268 SNX29Q8TEQ0 813 aa5.52□□□□□ -1.53
SF3B1-208ENST00000470268 TMX3Q96JJ7 454 aa5.52□□□□□ -1.53
SF3B1-208ENST00000470268 KANSL2Q9H9L4 492 aa5.52□□□□□ -1.53
SF3B1-208ENST00000470268 ELP3Q9H9T3 547 aa5.52□□□□□ -1.53
SF3B1-208ENST00000470268 EFCC1Q9HA90 598 aa5.52□□□□□ -1.53
SF3B1-208ENST00000470268 CLIP2Q9UDT6 1046 aa5.52□□□□□ -1.53
SF3B1-208ENST00000470268 LIMCH1Q9UPQ0 1083 aa5.52□□□□□ -1.53
SF3B1-208ENST00000470268 SNCAIPQ9Y6H5 919 aa5.52□□□□□ -1.53
SF3B1-208ENST00000470268 PASKQ96RG2 1323 aa5.51□□□□□ -1.53
SF3B1-208ENST00000470268 EIF1AYO14602 144 aaKnown RBP5.51□□□□□ -1.53
SF3B1-208ENST00000470268 CPNE3O75131 537 aaKnown RBP5.51□□□□□ -1.53
SF3B1-208ENST00000470268 CELF2O95319 508 aaKnown RBP5.51□□□□□ -1.53
SF3B1-208ENST00000470268 TTLL1O95922 423 aa5.51□□□□□ -1.53
SF3B1-208ENST00000470268 ASNSP08243 561 aa5.51□□□□□ -1.53
SF3B1-208ENST00000470268 MAPTP10636 758 aaKnown RBP5.51□□□□□ -1.53
SF3B1-208ENST00000470268 CDC27P30260 824 aa5.51□□□□□ -1.53
SF3B1-208ENST00000470268 NT5C2P49902 561 aa5.51□□□□□ -1.53
SF3B1-208ENST00000470268 CCT2P78371 535 aaKnown RBP5.51□□□□□ -1.53
SF3B1-208ENST00000470268 ICA1Q05084 483 aa5.51□□□□□ -1.53
SF3B1-208ENST00000470268 SCRN1Q12765 414 aa5.51□□□□□ -1.53
SF3B1-208ENST00000470268 STK3Q13188 491 aa5.51□□□□□ -1.53
SF3B1-208ENST00000470268 ORC1Q13415 861 aa5.51□□□□□ -1.53
SF3B1-208ENST00000470268 DOC2BQ14184 412 aa5.51□□□□□ -1.53
SF3B1-208ENST00000470268 SART3Q15020 963 aaKnown RBP5.51□□□□□ -1.53
SF3B1-208ENST00000470268 NOL9Q5SY16 702 aaKnown RBP5.51□□□□□ -1.53
SF3B1-208ENST00000470268 LDLRAD1Q5T700 205 aa5.51□□□□□ -1.53
SF3B1-208ENST00000470268 MICU3Q86XE3 530 aa5.51□□□□□ -1.53
SF3B1-208ENST00000470268 CCDC144CPQ8IYA2 1237 aa5.51□□□□□ -1.53
SF3B1-208ENST00000470268 ZNF654Q8IZM8 581 aa5.51□□□□□ -1.53
SF3B1-208ENST00000470268 MKL1Q969V6 931 aa5.51□□□□□ -1.53
SF3B1-208ENST00000470268 HOOK2Q96ED9 719 aa5.51□□□□□ -1.53
SF3B1-208ENST00000470268 NCOA5Q9HCD5 579 aaKnown RBP5.51□□□□□ -1.53
SF3B1-208ENST00000470268 CABP5Q9NP86 173 aa5.51□□□□□ -1.53
SF3B1-208ENST00000470268 NYAP2Q9P242 653 aa5.51□□□□□ -1.53
SF3B1-208ENST00000470268 GREB1LQ9C091 1923 aaPredicted RBP5.51□□□□□ -1.53
SF3B1-208ENST00000470268 PAPPA2Q9BXP8 1791 aa5.5□□□□□ -1.53
SF3B1-208ENST00000470268 ERICH2A1L162 156 aa5.5□□□□□ -1.53
SF3B1-208ENST00000470268 KHNYNO15037 678 aaKnown RBP5.5□□□□□ -1.53
SF3B1-208ENST00000470268 TOMM70O94826 608 aa5.5□□□□□ -1.53
SF3B1-208ENST00000470268 TOP1P11387 765 aaKnown RBP5.5□□□□□ -1.53
SF3B1-208ENST00000470268 NF2P35240 595 aa5.5□□□□□ -1.53
SF3B1-208ENST00000470268 ANKRD1Q15327 319 aa5.5□□□□□ -1.53
SF3B1-208ENST00000470268 SLC35G1Q2M3R5 365 aa5.5□□□□□ -1.53
SF3B1-208ENST00000470268 NFXL1Q6ZNB6 911 aa5.5□□□□□ -1.53
SF3B1-208ENST00000470268 ZNF274Q96GC6 653 aaPredicted RBP5.5□□□□□ -1.53
SF3B1-208ENST00000470268 GSX2Q9BZM3 304 aa5.5□□□□□ -1.53
SF3B1-208ENST00000470268 SLC12A7Q9Y666 1083 aa5.5□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms