RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 SLC35G1Q2M3R5 365 aa12.85□□□□□ -0.35
CPSF3-202ENST00000460593 GIGYF2Q6Y7W6 1299 aaKnown RBP12.85□□□□□ -0.35
CPSF3-202ENST00000460593 KIF2BQ8N4N8 673 aa12.85□□□□□ -0.35
CPSF3-202ENST00000460593 ELAC2Q9BQ52 826 aaKnown RBP12.85□□□□□ -0.35
CPSF3-202ENST00000460593 CD2APQ9Y5K6 639 aa12.85□□□□□ -0.35
CPSF3-202ENST00000460593 BAZ2AQ9UIF9 1905 aaKnown RBP12.84□□□□□ -0.35
CPSF3-202ENST00000460593 PHRF1Q9P1Y6 1649 aaKnown RBP12.84□□□□□ -0.35
CPSF3-202ENST00000460593 MYMKA6NI61 221 aa12.84□□□□□ -0.35
CPSF3-202ENST00000460593 NOL4O94818 638 aa12.84□□□□□ -0.35
CPSF3-202ENST00000460593 TRIM37O94972 964 aa12.84□□□□□ -0.35
CPSF3-202ENST00000460593 RCAN1P53805 252 aa12.84□□□□□ -0.35
CPSF3-202ENST00000460593 IFFO1Q0D2I5 559 aa12.84□□□□□ -0.35
CPSF3-202ENST00000460593 NAB2Q15742 525 aa12.84□□□□□ -0.35
CPSF3-202ENST00000460593 MAN2A1Q16706 1144 aa12.84□□□□□ -0.35
CPSF3-202ENST00000460593 FAM83BQ5T0W9 1011 aa12.84□□□□□ -0.35
CPSF3-202ENST00000460593 SPICE1Q8N0Z3 855 aa12.84□□□□□ -0.35
CPSF3-202ENST00000460593 TAF4BQ92750 862 aa12.84□□□□□ -0.35
CPSF3-202ENST00000460593 CUL5Q93034 780 aa12.84□□□□□ -0.35
CPSF3-202ENST00000460593 GJA10Q969M2 543 aa12.84□□□□□ -0.35
CPSF3-202ENST00000460593 PCDHA4Q9UN74 947 aa12.84□□□□□ -0.35
CPSF3-202ENST00000460593 THRAP3Q9Y2W1 955 aaKnown RBP12.84□□□□□ -0.35
CPSF3-202ENST00000460593 NR2E1Q9Y466 385 aa12.84□□□□□ -0.35
CPSF3-202ENST00000460593 KAT6BQ8WYB5 2073 aa12.84□□□□□ -0.35
CPSF3-202ENST00000460593 ANP32DO95626 131 aa12.84□□□□□ -0.35
CPSF3-202ENST00000460593 SFMBT2Q5VUG0 894 aa12.84□□□□□ -0.35
CPSF3-202ENST00000460593 DZIP3Q86Y13 1208 aaKnown RBP12.84□□□□□ -0.35
CPSF3-202ENST00000460593 CCDC63Q8NA47 563 aa12.84□□□□□ -0.35
CPSF3-202ENST00000460593 AGAP11Q8TF27 550 aa12.84□□□□□ -0.35
CPSF3-202ENST00000460593 FAM167BQ9BTA0 163 aa12.84□□□□□ -0.35
CPSF3-202ENST00000460593 GOPCQ9HD26 462 aa12.84□□□□□ -0.35
CPSF3-202ENST00000460593 ABCF3Q9NUQ8 709 aa12.84□□□□□ -0.35
CPSF3-202ENST00000460593 LMTK3Q96Q04 1460 aa12.84□□□□□ -0.35
CPSF3-202ENST00000460593 PPIP5K2O43314 1243 aa12.83□□□□□ -0.35
CPSF3-202ENST00000460593 ACTN1P12814 892 aa12.83□□□□□ -0.35
CPSF3-202ENST00000460593 CHN1P15882 459 aa12.83□□□□□ -0.35
CPSF3-202ENST00000460593 TXKP42681 527 aa12.83□□□□□ -0.35
CPSF3-202ENST00000460593 CACNB1Q02641 598 aaPredicted RBP12.83□□□□□ -0.35
CPSF3-202ENST00000460593 RPS6KA1Q15418 735 aa12.83□□□□□ -0.35
CPSF3-202ENST00000460593 SLC9C1Q4G0N8 1177 aa12.83□□□□□ -0.35
CPSF3-202ENST00000460593 TNS3Q68CZ2 1445 aa12.83□□□□□ -0.35
CPSF3-202ENST00000460593 NELFCDQ8IXH7 590 aa12.83□□□□□ -0.35
CPSF3-202ENST00000460593 FGFBP2Q9BYJ0 223 aa12.83□□□□□ -0.35
CPSF3-202ENST00000460593 CCT8L1PA6NM43 557 aa12.83□□□□□ -0.36
CPSF3-202ENST00000460593 ORC4O43929 436 aa12.83□□□□□ -0.36
CPSF3-202ENST00000460593 DIAPH2O60879 1101 aa12.83□□□□□ -0.36
CPSF3-202ENST00000460593 TRIM28Q13263 835 aaKnown RBP12.83□□□□□ -0.36
CPSF3-202ENST00000460593 CENPPQ6IPU0 288 aa12.83□□□□□ -0.36
CPSF3-202ENST00000460593 LRRC34Q8IZ02 419 aa12.83□□□□□ -0.36
CPSF3-202ENST00000460593 ZNF384Q8TF68 577 aa12.83□□□□□ -0.36
CPSF3-202ENST00000460593 CCDC47Q96A33 483 aaKnown RBP12.83□□□□□ -0.36
CPSF3-202ENST00000460593 XPO6Q96QU8 1125 aaKnown RBP12.83□□□□□ -0.36
CPSF3-202ENST00000460593 TSPY2A6NKD2 308 aa12.83□□□□□ -0.36
CPSF3-202ENST00000460593 MYBP10242 640 aa12.83□□□□□ -0.36
CPSF3-202ENST00000460593 SLCO1A2P46721 670 aa12.83□□□□□ -0.36
CPSF3-202ENST00000460593 CCDC38Q502W7 563 aa12.83□□□□□ -0.36
CPSF3-202ENST00000460593 KCNV2Q8TDN2 545 aa12.83□□□□□ -0.36
CPSF3-202ENST00000460593 MICAL1Q8TDZ2 1067 aa12.83□□□□□ -0.36
CPSF3-202ENST00000460593 CHMP6Q96FZ7 201 aa12.83□□□□□ -0.36
CPSF3-202ENST00000460593 RIOK1Q9BRS2 568 aaKnown RBP12.83□□□□□ -0.36
CPSF3-202ENST00000460593 MMTAG2Q9BU76 263 aaKnown RBP12.83□□□□□ -0.36
CPSF3-202ENST00000460593 CCSER1Q9C0I3 900 aa12.83□□□□□ -0.36
CPSF3-202ENST00000460593 CCDC113Q9H0I3 377 aa12.83□□□□□ -0.36
CPSF3-202ENST00000460593 TCP11L1Q9NUJ3 509 aa12.83□□□□□ -0.36
CPSF3-202ENST00000460593 GGA2Q9UJY4 613 aa12.83□□□□□ -0.36
CPSF3-202ENST00000460593 NOC2LQ9Y3T9 749 aaKnown RBP12.83□□□□□ -0.36
CPSF3-202ENST00000460593 CAMTA1Q9Y6Y1 1673 aa12.83□□□□□ -0.36
CPSF3-202ENST00000460593 KRIT1O00522 736 aa12.82□□□□□ -0.36
CPSF3-202ENST00000460593 PDE8AO60658 829 aa12.82□□□□□ -0.36
CPSF3-202ENST00000460593 INHBEP58166 350 aa12.82□□□□□ -0.36
CPSF3-202ENST00000460593 IFI35P80217 286 aaPredicted RBP12.82□□□□□ -0.36
CPSF3-202ENST00000460593 MKRN4PQ13434 485 aaPredicted RBP12.82□□□□□ -0.36
CPSF3-202ENST00000460593 PPP2R5BQ15173 497 aa12.82□□□□□ -0.36
CPSF3-202ENST00000460593 RNF10Q8N5U6 811 aaKnown RBP12.82□□□□□ -0.36
CPSF3-202ENST00000460593 METTL13Q8N6R0 699 aa12.82□□□□□ -0.36
CPSF3-202ENST00000460593 CCDC197Q8NCU1 140 aa12.82□□□□□ -0.36
CPSF3-202ENST00000460593 LMBR1Q8WVP7 490 aa12.82□□□□□ -0.36
CPSF3-202ENST00000460593 RSRC1Q96IZ7 334 aaKnown RBP12.82□□□□□ -0.36
CPSF3-202ENST00000460593 ZNF570Q96NI8 536 aa12.82□□□□□ -0.36
CPSF3-202ENST00000460593 NUDT12Q9BQG2 462 aa12.82□□□□□ -0.36
CPSF3-202ENST00000460593 STK38LQ9Y2H1 464 aa12.82□□□□□ -0.36
CPSF3-202ENST00000460593 TIAM2Q8IVF5 1701 aa12.82□□□□□ -0.36
CPSF3-202ENST00000460593 C5orf60A6NFR6 353 aa12.82□□□□□ -0.36
CPSF3-202ENST00000460593 DDAH1O94760 285 aa12.82□□□□□ -0.36
CPSF3-202ENST00000460593 MMEP08473 750 aa12.82□□□□□ -0.36
CPSF3-202ENST00000460593 SLC8A1P32418 973 aa12.82□□□□□ -0.36
CPSF3-202ENST00000460593 KLHL30Q0D2K2 578 aa12.82□□□□□ -0.36
CPSF3-202ENST00000460593 LACTB2Q53H82 288 aaPredicted RBP12.82□□□□□ -0.36
CPSF3-202ENST00000460593 LRRC55Q6ZSA7 311 aa12.82□□□□□ -0.36
CPSF3-202ENST00000460593 MARCH10Q8NA82 808 aaPredicted RBP12.82□□□□□ -0.36
CPSF3-202ENST00000460593 RNF217Q8TC41 542 aa12.82□□□□□ -0.36
CPSF3-202ENST00000460593 ANKS1AQ92625 1134 aa12.82□□□□□ -0.36
CPSF3-202ENST00000460593 PSMD1Q99460 953 aa12.82□□□□□ -0.36
CPSF3-202ENST00000460593 MLXIPLQ9NP71 852 aa12.82□□□□□ -0.36
CPSF3-202ENST00000460593 TRIM33Q9UPN9 1127 aa12.82□□□□□ -0.36
CPSF3-202ENST00000460593 FOXO6A8MYZ6 492 aa12.81□□□□□ -0.36
CPSF3-202ENST00000460593 KIF4AO95239 1232 aa12.81□□□□□ -0.36
CPSF3-202ENST00000460593 VIMP08670 466 aaKnown RBP12.81□□□□□ -0.36
CPSF3-202ENST00000460593 CALM1P0DP23 149 aa12.81□□□□□ -0.36
CPSF3-202ENST00000460593 CALM2P0DP24 149 aa12.81□□□□□ -0.36
CPSF3-202ENST00000460593 CALM3P0DP25 149 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms