RNA–Protein interactions for RNA: ENST00000460569.1

UPF2-204, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF2, Length 640 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-204ENST00000460569 FAM20AQ96MK3 541 aa11.5□□□□□ -0.57
UPF2-204ENST00000460569 TEKT3Q9BXF9 490 aa11.5□□□□□ -0.57
UPF2-204ENST00000460569 MCOLN1Q9GZU1 580 aa11.5□□□□□ -0.57
UPF2-204ENST00000460569 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.5□□□□□ -0.57
UPF2-204ENST00000460569 HMX1Q9NP08 348 aaPredicted RBP11.5□□□□□ -0.57
UPF2-204ENST00000460569 CFAP45Q9UL16 551 aa11.5□□□□□ -0.57
UPF2-204ENST00000460569 NFASCO94856 1347 aa11.5□□□□□ -0.57
UPF2-204ENST00000460569 WDR81Q562E7 1941 aa11.49□□□□□ -0.57
UPF2-204ENST00000460569 LAD1O00515 517 aa11.49□□□□□ -0.57
UPF2-204ENST00000460569 YEATS4O95619 227 aa11.49□□□□□ -0.57
UPF2-204ENST00000460569 GH1P01241 217 aa11.49□□□□□ -0.57
UPF2-204ENST00000460569 RARBP10826 455 aa11.49□□□□□ -0.57
UPF2-204ENST00000460569 TXKP42681 527 aa11.49□□□□□ -0.57
UPF2-204ENST00000460569 SP4Q02446 784 aa11.49□□□□□ -0.57
UPF2-204ENST00000460569 PTPAQ15257 358 aa11.49□□□□□ -0.57
UPF2-204ENST00000460569 MTFR1Q15390 333 aa11.49□□□□□ -0.57
UPF2-204ENST00000460569 TMEM266Q2M3C6 531 aa11.49□□□□□ -0.57
UPF2-204ENST00000460569 CYFIP1Q7L576 1253 aa11.49□□□□□ -0.57
UPF2-204ENST00000460569 TLK2Q86UE8 772 aa11.49□□□□□ -0.57
UPF2-204ENST00000460569 DHX37Q8IY37 1157 aaKnown RBP11.49□□□□□ -0.57
UPF2-204ENST00000460569 C4orf32Q8N8J7 132 aa11.49□□□□□ -0.57
UPF2-204ENST00000460569 GIMAP8Q8ND71 665 aaPredicted RBP11.49□□□□□ -0.57
UPF2-204ENST00000460569 OR6J1Q8NGC5 347 aa11.49□□□□□ -0.57
UPF2-204ENST00000460569 MTMR9Q96QG7 549 aa11.49□□□□□ -0.57
UPF2-204ENST00000460569 RIT2Q99578 217 aa11.49□□□□□ -0.57
UPF2-204ENST00000460569 SENP7Q9BQF6 1050 aa11.49□□□□□ -0.57
UPF2-204ENST00000460569 UNC93B1Q9H1C4 597 aa11.49□□□□□ -0.57
UPF2-204ENST00000460569 MLXIPQ9HAP2 919 aa11.49□□□□□ -0.57
UPF2-204ENST00000460569 JPH1Q9HDC5 661 aaPredicted RBP11.49□□□□□ -0.57
UPF2-204ENST00000460569 TBC1D22BQ9NU19 505 aa11.49□□□□□ -0.57
UPF2-204ENST00000460569 DDX20Q9UHI6 824 aaKnown RBP11.49□□□□□ -0.57
UPF2-204ENST00000460569 SPTLC2O15270 562 aa11.48□□□□□ -0.57
UPF2-204ENST00000460569 DHX15O43143 795 aaKnown RBP11.48□□□□□ -0.57
UPF2-204ENST00000460569 CHMP2AO43633 222 aa11.48□□□□□ -0.57
UPF2-204ENST00000460569 MSCO60682 206 aa11.48□□□□□ -0.57
UPF2-204ENST00000460569 DUSP11O75319 330 aaKnown RBP11.48□□□□□ -0.57
UPF2-204ENST00000460569 PSMD10O75832 226 aa11.48□□□□□ -0.57
UPF2-204ENST00000460569 FARP2O94887 1054 aaPredicted RBP11.48□□□□□ -0.57
UPF2-204ENST00000460569 CCL5P13501 91 aa11.48□□□□□ -0.57
UPF2-204ENST00000460569 MARCKSP29966 332 aaPredicted RBP11.48□□□□□ -0.57
UPF2-204ENST00000460569 PRPHP41219 470 aa11.48□□□□□ -0.57
UPF2-204ENST00000460569 ARHGAP1Q07960 439 aa11.48□□□□□ -0.57
UPF2-204ENST00000460569 SLC39A14Q15043 492 aa11.48□□□□□ -0.57
UPF2-204ENST00000460569 CELF3Q5SZQ8 465 aaKnown RBP11.48□□□□□ -0.57
UPF2-204ENST00000460569 METTL7BQ6UX53 244 aa11.48□□□□□ -0.57
UPF2-204ENST00000460569 DTHD1Q6ZMT9 781 aa11.48□□□□□ -0.57
UPF2-204ENST00000460569 LINC00301Q8NCQ3 95 aa11.48□□□□□ -0.57
UPF2-204ENST00000460569 ARMC5Q96C12 935 aa11.48□□□□□ -0.57
UPF2-204ENST00000460569 ZNF333Q96JL9 665 aa11.48□□□□□ -0.57
UPF2-204ENST00000460569 SPATA32Q96LK8 384 aa11.48□□□□□ -0.57
UPF2-204ENST00000460569 AP5M1Q9H0R1 490 aa11.48□□□□□ -0.57
UPF2-204ENST00000460569 BCAS3Q9H6U6 928 aa11.48□□□□□ -0.57
UPF2-204ENST00000460569 TTC12Q9H892 705 aaPredicted RBP11.48□□□□□ -0.57
UPF2-204ENST00000460569 XPNPEP3Q9NQH7 507 aa11.48□□□□□ -0.57
UPF2-204ENST00000460569 SLC9A2Q9UBY0 812 aa11.48□□□□□ -0.57
UPF2-204ENST00000460569 PCDHA12Q9UN75 941 aa11.48□□□□□ -0.57
UPF2-204ENST00000460569 GNEQ9Y223 722 aaKnown RBP11.48□□□□□ -0.57
UPF2-204ENST00000460569 SYNRGQ9UMZ2 1314 aa11.48□□□□□ -0.57
UPF2-204ENST00000460569 ELP1O95163 1332 aa11.47□□□□□ -0.57
UPF2-204ENST00000460569 VWA3AA6NCI4 1184 aa11.47□□□□□ -0.57
UPF2-204ENST00000460569 POTEMA6NI47 508 aa11.47□□□□□ -0.57
UPF2-204ENST00000460569 NOP56O00567 594 aaKnown RBP11.47□□□□□ -0.57
UPF2-204ENST00000460569 DYNC1LI2O43237 492 aaPredicted RBP11.47□□□□□ -0.57
UPF2-204ENST00000460569 TECP42680 631 aa11.47□□□□□ -0.57
UPF2-204ENST00000460569 KRT76Q01546 638 aa11.47□□□□□ -0.57
UPF2-204ENST00000460569 LAMC2Q13753 1193 aa11.47□□□□□ -0.57
UPF2-204ENST00000460569 ARL6IP4Q66PJ3 421 aaKnown RBP11.47□□□□□ -0.57
UPF2-204ENST00000460569 NCAPH2Q6IBW4 605 aa11.47□□□□□ -0.57
UPF2-204ENST00000460569 ZNF746Q6NUN9 644 aaPredicted RBP11.47□□□□□ -0.57
UPF2-204ENST00000460569 KCNG4Q8TDN1 519 aa11.47□□□□□ -0.57
UPF2-204ENST00000460569 LEO1Q8WVC0 666 aaPredicted RBP11.47□□□□□ -0.57
UPF2-204ENST00000460569 SPATA33Q96N06 139 aa11.47□□□□□ -0.57
UPF2-204ENST00000460569 SCAND2PQ9GZW5 306 aaPredicted RBP11.47□□□□□ -0.57
UPF2-204ENST00000460569 RNF208Q9H0X6 261 aa11.47□□□□□ -0.57
UPF2-204ENST00000460569 UNC45AQ9H3U1 944 aa11.47□□□□□ -0.57
UPF2-204ENST00000460569 SPC25Q9HBM1 224 aa11.47□□□□□ -0.57
UPF2-204ENST00000460569 GDPD2Q9HCC8 539 aa11.47□□□□□ -0.57
UPF2-204ENST00000460569 FBXO2Q9UK22 296 aaPredicted RBP11.47□□□□□ -0.57
UPF2-204ENST00000460569 VAV3Q9UKW4 847 aa11.47□□□□□ -0.57
UPF2-204ENST00000460569 HTTP42858 3142 aa11.46□□□□□ -0.57
UPF2-204ENST00000460569 WDR64B1ANS9 1081 aa11.46□□□□□ -0.57
UPF2-204ENST00000460569 PPP6R2O75170 966 aa11.46□□□□□ -0.57
UPF2-204ENST00000460569 CCNE2O96020 404 aa11.46□□□□□ -0.57
UPF2-204ENST00000460569 PGK1P00558 417 aa11.46□□□□□ -0.57
UPF2-204ENST00000460569 MYCNP04198 464 aaPredicted RBP11.46□□□□□ -0.57
UPF2-204ENST00000460569 C6orf222P0C671 652 aaPredicted RBP11.46□□□□□ -0.57
UPF2-204ENST00000460569 ME1P48163 572 aa11.46□□□□□ -0.57
UPF2-204ENST00000460569 FXR2P51116 673 aaKnown RBP eCLIP11.46□□□□□ -0.574e-9■□□□□ 11.1
UPF2-204ENST00000460569 JAK3P52333 1124 aa11.46□□□□□ -0.57
UPF2-204ENST00000460569 ACTR2P61160 394 aa11.46□□□□□ -0.57
UPF2-204ENST00000460569 PPP2R5CQ13362 524 aa11.46□□□□□ -0.57
UPF2-204ENST00000460569 IL17AQ16552 155 aa11.46□□□□□ -0.57
UPF2-204ENST00000460569 HSDL1Q3SXM5 330 aa11.46□□□□□ -0.57
UPF2-204ENST00000460569 MIER3Q7Z3K6 550 aa11.46□□□□□ -0.57
UPF2-204ENST00000460569 KRI1Q8N9T8 703 aaKnown RBP11.46□□□□□ -0.57
UPF2-204ENST00000460569 PPTC7Q8NI37 304 aa11.46□□□□□ -0.57
UPF2-204ENST00000460569 AFG1LQ8WV93 481 aa11.46□□□□□ -0.57
UPF2-204ENST00000460569 EMID1Q96A84 441 aaPredicted RBP11.46□□□□□ -0.57
UPF2-204ENST00000460569 FERMT2Q96AC1 680 aa11.46□□□□□ -0.57
UPF2-204ENST00000460569 RAB34Q9BZG1 259 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms