RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 CDC45O75419 566 aa5.88□□□□□ -1.47
USP40-209ENST00000452724 C8BP07358 591 aa5.88□□□□□ -1.47
USP40-209ENST00000452724 FPR2P25090 351 aa5.88□□□□□ -1.47
USP40-209ENST00000452724 BCL6P41182 706 aa5.88□□□□□ -1.47
USP40-209ENST00000452724 DLX2Q07687 328 aaPredicted RBP5.88□□□□□ -1.47
USP40-209ENST00000452724 SMAD4Q13485 552 aaKnown RBP5.88□□□□□ -1.47
USP40-209ENST00000452724 RTP5Q14D33 572 aa5.88□□□□□ -1.47
USP40-209ENST00000452724 DBX2Q6ZNG2 339 aa5.88□□□□□ -1.47
USP40-209ENST00000452724 Q8N1Y9 231 aa5.88□□□□□ -1.47
USP40-209ENST00000452724 TTLL6Q8N841 843 aa5.88□□□□□ -1.47
USP40-209ENST00000452724 KYQ8NBH2 561 aa5.88□□□□□ -1.47
USP40-209ENST00000452724 CHAMP1Q96JM3 812 aa5.88□□□□□ -1.47
USP40-209ENST00000452724 NOX5Q96PH1 765 aa5.88□□□□□ -1.47
USP40-209ENST00000452724 MRPL4Q9BYD3 311 aaKnown RBP5.88□□□□□ -1.47
USP40-209ENST00000452724 NCOA5Q9HCD5 579 aaKnown RBP5.88□□□□□ -1.47
USP40-209ENST00000452724 SFMBT1Q9UHJ3 866 aa5.88□□□□□ -1.47
USP40-209ENST00000452724 PALD1Q9ULE6 856 aa5.88□□□□□ -1.47
USP40-209ENST00000452724 TRAF6Q9Y4K3 522 aa5.88□□□□□ -1.47
USP40-209ENST00000452724 X6R8D5 127 aa5.88□□□□□ -1.47
USP40-209ENST00000452724 ASXL2Q76L83 1435 aa5.88□□□□□ -1.47
USP40-209ENST00000452724 H7BY64 318 aa5.87□□□□□ -1.47
USP40-209ENST00000452724 AQP7O14520 342 aa5.87□□□□□ -1.47
USP40-209ENST00000452724 ENPP3O14638 875 aa5.87□□□□□ -1.47
USP40-209ENST00000452724 PPP1R12AO14974 1030 aaPredicted RBP5.87□□□□□ -1.47
USP40-209ENST00000452724 MSCO60682 206 aa5.87□□□□□ -1.47
USP40-209ENST00000452724 ASMTLO95671 621 aa5.87□□□□□ -1.47
USP40-209ENST00000452724 GPR85P60893 370 aa5.87□□□□□ -1.47
USP40-209ENST00000452724 LSAMPQ13449 338 aa5.87□□□□□ -1.47
USP40-209ENST00000452724 SPATS1Q496A3 300 aa5.87□□□□□ -1.47
USP40-209ENST00000452724 LCE5AQ5TCM9 118 aa5.87□□□□□ -1.47
USP40-209ENST00000452724 SDE2Q6IQ49 451 aa5.87□□□□□ -1.47
USP40-209ENST00000452724 LBX2Q6XYB7 198 aa5.87□□□□□ -1.47
USP40-209ENST00000452724 C16orf86Q6ZW13 317 aa5.87□□□□□ -1.47
USP40-209ENST00000452724 FAM124AQ86V42 546 aa5.87□□□□□ -1.47
USP40-209ENST00000452724 NLRP10Q86W26 655 aa5.87□□□□□ -1.47
USP40-209ENST00000452724 FAM126BQ8IXS8 530 aa5.87□□□□□ -1.47
USP40-209ENST00000452724 IFNL3Q8IZI9 196 aa5.87□□□□□ -1.47
USP40-209ENST00000452724 SYNPOQ8N3V7 929 aa5.87□□□□□ -1.47
USP40-209ENST00000452724 PUM2Q8TB72 1066 aaKnown RBP eCLIP5.87□□□□□ -1.47
USP40-209ENST00000452724 GORASP1Q9BQQ3 440 aa5.87□□□□□ -1.47
USP40-209ENST00000452724 C11orf84Q9BUA3 381 aaPredicted RBP5.87□□□□□ -1.47
USP40-209ENST00000452724 SPATA6Q9NWH7 488 aaPredicted RBP5.87□□□□□ -1.47
USP40-209ENST00000452724 NDOR1Q9UHB4 597 aa5.87□□□□□ -1.47
USP40-209ENST00000452724 FBXL7Q9UJT9 491 aa5.87□□□□□ -1.47
USP40-209ENST00000452724 K7ESM1 405 aa5.86□□□□□ -1.47
USP40-209ENST00000452724 PLD2O14939 933 aa5.86□□□□□ -1.47
USP40-209ENST00000452724 NOBOXO60393 691 aa5.86□□□□□ -1.47
USP40-209ENST00000452724 MAFKO60675 156 aa5.86□□□□□ -1.47
USP40-209ENST00000452724 EFCAB14O75071 495 aa5.86□□□□□ -1.47
USP40-209ENST00000452724 RAPGEF3O95398 923 aa5.86□□□□□ -1.47
USP40-209ENST00000452724 THBS2P35442 1172 aa5.86□□□□□ -1.47
USP40-209ENST00000452724 NKX3-2P78367 333 aa5.86□□□□□ -1.47
USP40-209ENST00000452724 KIAA2012Q0VF49 1180 aa5.86□□□□□ -1.47
USP40-209ENST00000452724 TCEA2Q15560 299 aa5.86□□□□□ -1.47
USP40-209ENST00000452724 TRIM61Q5EBN2 209 aa5.86□□□□□ -1.47
USP40-209ENST00000452724 GSTCDQ8NEC7 633 aa5.86□□□□□ -1.47
USP40-209ENST00000452724 SLC52A2Q9HAB3 445 aa5.86□□□□□ -1.47
USP40-209ENST00000452724 CLDND1Q9NY35 253 aa5.86□□□□□ -1.47
USP40-209ENST00000452724 ZNF652Q9Y2D9 606 aa5.86□□□□□ -1.47
USP40-209ENST00000452724 HGSO14964 777 aaPredicted RBP5.85□□□□□ -1.47
USP40-209ENST00000452724 PRICKLE3O43900 615 aaPredicted RBP5.85□□□□□ -1.47
USP40-209ENST00000452724 ADRB1P08588 477 aa5.85□□□□□ -1.47
USP40-209ENST00000452724 RPL13P26373 211 aaKnown RBP5.85□□□□□ -1.47
USP40-209ENST00000452724 CNR2P34972 360 aa5.85□□□□□ -1.47
USP40-209ENST00000452724 KIZQ2M2Z5 673 aa5.85□□□□□ -1.47
USP40-209ENST00000452724 TKFCQ3LXA3 575 aa5.85□□□□□ -1.47
USP40-209ENST00000452724 FNDC3BQ53EP0 1204 aaKnown RBP5.85□□□□□ -1.47
USP40-209ENST00000452724 FAM26FQ5R3K3 315 aa5.85□□□□□ -1.47
USP40-209ENST00000452724 BORAQ6PGQ7 559 aa5.85□□□□□ -1.47
USP40-209ENST00000452724 MTDHQ86UE4 582 aaKnown RBP5.85□□□□□ -1.47
USP40-209ENST00000452724 ZNF761Q86XN6 746 aaPredicted RBP5.85□□□□□ -1.47
USP40-209ENST00000452724 SLC7A14Q8TBB6 771 aa5.85□□□□□ -1.47
USP40-209ENST00000452724 ADAMTS17Q8TE56 1095 aa5.85□□□□□ -1.47
USP40-209ENST00000452724 DDX1Q92499 740 aaKnown RBP5.85□□□□□ -1.47
USP40-209ENST00000452724 ALG1Q9BT22 464 aa5.85□□□□□ -1.47
USP40-209ENST00000452724 EPB41L1Q9H4G0 881 aa5.85□□□□□ -1.47
USP40-209ENST00000452724 ADAMTS20P59510 1910 aa5.84□□□□□ -1.47
USP40-209ENST00000452724 LOC101059915A0A1B0GWI6 518 aaPredicted RBP5.84□□□□□ -1.47
USP40-209ENST00000452724 KCNQ2O43526 872 aa5.84□□□□□ -1.47
USP40-209ENST00000452724 CYP7B1O75881 506 aa5.84□□□□□ -1.47
USP40-209ENST00000452724 DGKIO75912 1065 aa5.84□□□□□ -1.47
USP40-209ENST00000452724 NAT1P18440 290 aa5.84□□□□□ -1.47
USP40-209ENST00000452724 GUCY1A3Q02108 690 aa5.84□□□□□ -1.47
USP40-209ENST00000452724 RGL3Q3MIN7 710 aa5.84□□□□□ -1.47
USP40-209ENST00000452724 STEAP3Q658P3 488 aa5.84□□□□□ -1.47
USP40-209ENST00000452724 BRAPQ7Z569 592 aa5.84□□□□□ -1.47
USP40-209ENST00000452724 FERMT3Q86UX7 667 aa5.84□□□□□ -1.47
USP40-209ENST00000452724 FEZ1Q99689 392 aa5.84□□□□□ -1.47
USP40-209ENST00000452724 KRTAP4-2Q9BYR5 136 aa5.84□□□□□ -1.47
USP40-209ENST00000452724 CDIP1Q9H305 208 aa5.84□□□□□ -1.47
USP40-209ENST00000452724 PPARGC1AQ9UBK2 798 aaKnown RBP5.84□□□□□ -1.47
USP40-209ENST00000452724 PCDHB4Q9Y5E5 795 aa5.84□□□□□ -1.47
USP40-209ENST00000452724 PCDHA8Q9Y5H6 950 aa5.84□□□□□ -1.47
USP40-209ENST00000452724 CD2APQ9Y5K6 639 aa5.84□□□□□ -1.47
USP40-209ENST00000452724 KRIT1O00522 736 aa5.83□□□□□ -1.48
USP40-209ENST00000452724 CRTAMO95727 393 aa5.83□□□□□ -1.48
USP40-209ENST00000452724 SOD2P04179 222 aa5.83□□□□□ -1.48
USP40-209ENST00000452724 GRK2P25098 689 aa5.83□□□□□ -1.48
USP40-209ENST00000452724 HSD3B2P26439 372 aa5.83□□□□□ -1.48
USP40-209ENST00000452724 GRK3P35626 688 aa5.83□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms