RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 SELPP16109 830 aa8.96□□□□□ -0.97
CD44-211ENST00000442151 KRT32Q14532 448 aa8.96□□□□□ -0.97
CD44-211ENST00000442151 GRIN2CQ14957 1233 aa8.96□□□□□ -0.97
CD44-211ENST00000442151 AAK1Q2M2I8 961 aa8.96□□□□□ -0.97
CD44-211ENST00000442151 COPS5Q92905 334 aa8.96□□□□□ -0.97
CD44-211ENST00000442151 SPATA33Q96N06 139 aa8.96□□□□□ -0.97
CD44-211ENST00000442151 USP26Q9BXU7 913 aa8.96□□□□□ -0.97
CD44-211ENST00000442151 GLT8D2Q9H1C3 349 aa8.96□□□□□ -0.97
CD44-211ENST00000442151 EMSYQ7Z589 1322 aa8.96□□□□□ -0.97
CD44-211ENST00000442151 LOC100996750A0A140TA64 210 aa8.96□□□□□ -0.98
CD44-211ENST00000442151 FIBPO43427 364 aa8.96□□□□□ -0.98
CD44-211ENST00000442151 HMGB1P09429 215 aaKnown RBP8.96□□□□□ -0.98
CD44-211ENST00000442151 ICAM3P32942 547 aa8.96□□□□□ -0.98
CD44-211ENST00000442151 LIFRP42702 1097 aa8.96□□□□□ -0.98
CD44-211ENST00000442151 PTH1RQ03431 593 aa8.96□□□□□ -0.98
CD44-211ENST00000442151 RBL2Q08999 1139 aa8.96□□□□□ -0.98
CD44-211ENST00000442151 TROAPQ12815 778 aa8.96□□□□□ -0.98
CD44-211ENST00000442151 IKBKEQ14164 716 aa8.96□□□□□ -0.98
CD44-211ENST00000442151 MFSD10Q14728 455 aa8.96□□□□□ -0.98
CD44-211ENST00000442151 PGM5Q15124 567 aa8.96□□□□□ -0.98
CD44-211ENST00000442151 MYSM1Q5VVJ2 828 aa8.96□□□□□ -0.98
CD44-211ENST00000442151 PPP2R2DQ66LE6 453 aa8.96□□□□□ -0.98
CD44-211ENST00000442151 CNKSR3Q6P9H4 555 aa8.96□□□□□ -0.98
CD44-211ENST00000442151 FAM43BQ6ZT52 329 aaPredicted RBP8.96□□□□□ -0.98
CD44-211ENST00000442151 DEFB128Q7Z7B8 93 aa8.96□□□□□ -0.98
CD44-211ENST00000442151 FCHSD1Q86WN1 690 aa8.96□□□□□ -0.98
CD44-211ENST00000442151 IGDCC4Q8TDY8 1250 aa8.96□□□□□ -0.98
CD44-211ENST00000442151 ATXN2LQ8WWM7 1075 aaKnown RBP8.96□□□□□ -0.98
CD44-211ENST00000442151 SCLYQ96I15 445 aa8.96□□□□□ -0.98
CD44-211ENST00000442151 PIGSQ96S52 555 aa8.96□□□□□ -0.98
CD44-211ENST00000442151 KRTAP4-6Q9BYQ5 205 aa8.96□□□□□ -0.98
CD44-211ENST00000442151 WNT8AQ9H1J5 351 aa8.96□□□□□ -0.98
CD44-211ENST00000442151 NKX2-4Q9H2Z4 354 aa8.96□□□□□ -0.98
CD44-211ENST00000442151 RBM28Q9NW13 759 aaKnown RBP8.96□□□□□ -0.98
CD44-211ENST00000442151 GTF2IRD1Q9UHL9 959 aa8.96□□□□□ -0.98
CD44-211ENST00000442151 ZNF215Q9UL58 517 aaPredicted RBP8.96□□□□□ -0.98
CD44-211ENST00000442151 SLC12A7Q9Y666 1083 aa8.96□□□□□ -0.98
CD44-211ENST00000442151 PIK3CDO00329 1044 aa8.95□□□□□ -0.98
CD44-211ENST00000442151 PRC1O43663 620 aa8.95□□□□□ -0.98
CD44-211ENST00000442151 ARIH2O95376 493 aa8.95□□□□□ -0.98
CD44-211ENST00000442151 GGPS1O95749 300 aa8.95□□□□□ -0.98
CD44-211ENST00000442151 IGFBP4P22692 258 aa8.95□□□□□ -0.98
CD44-211ENST00000442151 KIAA0753Q2KHM9 967 aa8.95□□□□□ -0.98
CD44-211ENST00000442151 TMEM63BQ5T3F8 832 aa8.95□□□□□ -0.98
CD44-211ENST00000442151 MCTP2Q6DN12 878 aa8.95□□□□□ -0.98
CD44-211ENST00000442151 LRRC8DQ7L1W4 858 aa8.95□□□□□ -0.98
CD44-211ENST00000442151 CENPQQ7L2Z9 268 aaPredicted RBP8.95□□□□□ -0.98
CD44-211ENST00000442151 ZNF654Q8IZM8 581 aa8.95□□□□□ -0.98
CD44-211ENST00000442151 ALG1Q9BT22 464 aa8.95□□□□□ -0.98
CD44-211ENST00000442151 ZBED2Q9BTP6 218 aa8.95□□□□□ -0.98
CD44-211ENST00000442151 COL20A1Q9P218 1284 aa8.95□□□□□ -0.98
CD44-211ENST00000442151 A0A0C4DFX4 3053 aa8.95□□□□□ -0.98
CD44-211ENST00000442151 LRRC37A2A6NM11 1700 aa8.94□□□□□ -0.98
CD44-211ENST00000442151 C17orf102A2RUQ5 167 aa8.94□□□□□ -0.98
CD44-211ENST00000442151 RIOK3O14730 519 aaKnown RBP8.94□□□□□ -0.98
CD44-211ENST00000442151 F2P00734 622 aa8.94□□□□□ -0.98
CD44-211ENST00000442151 HOXD8P13378 290 aaPredicted RBP8.94□□□□□ -0.98
CD44-211ENST00000442151 TJAP1Q5JTD0 557 aa8.94□□□□□ -0.98
CD44-211ENST00000442151 RSPH3Q86UC2 560 aa8.94□□□□□ -0.98
CD44-211ENST00000442151 MB21D2Q8IYB1 491 aaPredicted RBP8.94□□□□□ -0.98
CD44-211ENST00000442151 SENP7Q9BQF6 1050 aa8.94□□□□□ -0.98
CD44-211ENST00000442151 PSTPIP2Q9H939 334 aa8.94□□□□□ -0.98
CD44-211ENST00000442151 HDAC6Q9UBN7 1215 aa8.94□□□□□ -0.98
CD44-211ENST00000442151 DDX49Q9Y6V7 483 aaKnown RBP8.94□□□□□ -0.98
CD44-211ENST00000442151 CCDC196A0A1B0GTZ2 297 aa8.94□□□□□ -0.98
CD44-211ENST00000442151 SPDYE3A6NKU9 549 aa8.94□□□□□ -0.98
CD44-211ENST00000442151 GRXCR1A8MXD5 290 aa8.94□□□□□ -0.98
CD44-211ENST00000442151 SPATA31C2B4DYI2 1134 aa8.94□□□□□ -0.98
CD44-211ENST00000442151 H3BRB1 525 aa8.94□□□□□ -0.98
CD44-211ENST00000442151 hCG_1984214I3L0E3 225 aa8.94□□□□□ -0.98
CD44-211ENST00000442151 HAS3O00219 553 aa8.94□□□□□ -0.98
CD44-211ENST00000442151 FOSP01100 380 aaPredicted RBP8.94□□□□□ -0.98
CD44-211ENST00000442151 HOXA13P31271 388 aaPredicted RBP8.94□□□□□ -0.98
CD44-211ENST00000442151 MRPS5P82675 430 aaKnown RBP8.94□□□□□ -0.98
CD44-211ENST00000442151 PCNX4Q63HM2 1172 aa8.94□□□□□ -0.98
CD44-211ENST00000442151 GDF6Q6KF10 455 aaPredicted RBP8.94□□□□□ -0.98
CD44-211ENST00000442151 METTL7BQ6UX53 244 aa8.94□□□□□ -0.98
CD44-211ENST00000442151 ZNF713Q8N859 430 aaPredicted RBP8.94□□□□□ -0.98
CD44-211ENST00000442151 ESYT1Q9BSJ8 1104 aa8.94□□□□□ -0.98
CD44-211ENST00000442151 PRDM12Q9H4Q4 367 aa8.94□□□□□ -0.98
CD44-211ENST00000442151 TUT1Q9H6E5 874 aaKnown RBP8.94□□□□□ -0.98
CD44-211ENST00000442151 ANO2Q9NQ90 1003 aa8.94□□□□□ -0.98
CD44-211ENST00000442151 CXXC1Q9P0U4 656 aaPredicted RBP8.94□□□□□ -0.98
CD44-211ENST00000442151 UMODL1Q5DID0 1318 aa8.93□□□□□ -0.98
CD44-211ENST00000442151 MYH6P13533 1939 aa8.93□□□□□ -0.98
CD44-211ENST00000442151 TLL1O43897 1013 aa8.93□□□□□ -0.98
CD44-211ENST00000442151 AMHP03971 560 aa8.93□□□□□ -0.98
CD44-211ENST00000442151 CKBP12277 381 aa8.93□□□□□ -0.98
CD44-211ENST00000442151 POU3F3P20264 500 aaPredicted RBP8.93□□□□□ -0.98
CD44-211ENST00000442151 FGD1P98174 961 aa8.93□□□□□ -0.98
CD44-211ENST00000442151 BMP2KLQ5H9B9 411 aa8.93□□□□□ -0.98
CD44-211ENST00000442151 HERC6Q8IVU3 1022 aa8.93□□□□□ -0.98
CD44-211ENST00000442151 FANCBQ8NB91 859 aa8.93□□□□□ -0.98
CD44-211ENST00000442151 ANKK1Q8NFD2 765 aa8.93□□□□□ -0.98
CD44-211ENST00000442151 SEPT8Q92599 483 aa8.93□□□□□ -0.98
CD44-211ENST00000442151 KAT2BQ92831 832 aa8.93□□□□□ -0.98
CD44-211ENST00000442151 ATP6V0A1Q93050 837 aa8.93□□□□□ -0.98
CD44-211ENST00000442151 GPRASP2Q96D09 838 aa8.93□□□□□ -0.98
CD44-211ENST00000442151 INPP4AQ96PE3 977 aaPredicted RBP8.93□□□□□ -0.98
CD44-211ENST00000442151 NEK1Q96PY6 1258 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms