RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 PDIA5Q14554 519 aa10.74□□□□□ -0.69
USP54-205ENST00000424265 PPP1R7Q15435 360 aa10.74□□□□□ -0.69
USP54-205ENST00000424265 SLC10A4Q96EP9 437 aa10.74□□□□□ -0.69
USP54-205ENST00000424265 BUD13Q9BRD0 619 aaKnown RBP eCLIP10.74□□□□□ -0.69
USP54-205ENST00000424265 TSPYL2Q9H2G4 693 aaPredicted RBP10.74□□□□□ -0.69
USP54-205ENST00000424265 ZSCAN9O15535 394 aaPredicted RBP10.73□□□□□ -0.69
USP54-205ENST00000424265 ALDH3A1P30838 453 aa10.73□□□□□ -0.69
USP54-205ENST00000424265 TUBB2AQ13885 445 aa10.73□□□□□ -0.69
USP54-205ENST00000424265 SPDYE2Q495Y8 402 aa10.73□□□□□ -0.69
USP54-205ENST00000424265 DIS3L2Q8IYB7 885 aaKnown RBP10.73□□□□□ -0.69
USP54-205ENST00000424265 FAM167BQ9BTA0 163 aa10.73□□□□□ -0.69
USP54-205ENST00000424265 TUBB2BQ9BVA1 445 aa10.73□□□□□ -0.69
USP54-205ENST00000424265 HDAC6Q9UBN7 1215 aa10.73□□□□□ -0.69
USP54-205ENST00000424265 CORO1CQ9ULV4 474 aaPredicted RBP10.73□□□□□ -0.69
USP54-205ENST00000424265 HNRNPCP07910 306 aaKnown RBP eCLIP10.73□□□□□ -0.69
USP54-205ENST00000424265 STXBP4Q6ZWJ1 553 aa10.73□□□□□ -0.69
USP54-205ENST00000424265 CDC37L1Q7L3B6 337 aa10.73□□□□□ -0.69
USP54-205ENST00000424265 LRRC47Q8N1G4 583 aaKnown RBP10.73□□□□□ -0.69
USP54-205ENST00000424265 AOPEPQ8N6M6 819 aa10.73□□□□□ -0.69
USP54-205ENST00000424265 TEKT4Q8WW24 435 aa10.73□□□□□ -0.69
USP54-205ENST00000424265 LUC7LQ9NQ29 371 aaKnown RBP10.73□□□□□ -0.69
USP54-205ENST00000424265 NEDD4P46934 1319 aa10.73□□□□□ -0.69
USP54-205ENST00000424265 CTNND1O60716 968 aaKnown RBP10.73□□□□□ -0.69
USP54-205ENST00000424265 RTN2O75298 545 aa10.73□□□□□ -0.69
USP54-205ENST00000424265 PSMC4P43686 418 aa10.73□□□□□ -0.69
USP54-205ENST00000424265 ZBED6P86452 979 aa10.73□□□□□ -0.69
USP54-205ENST00000424265 OR8K1Q8NGG5 319 aa10.73□□□□□ -0.69
USP54-205ENST00000424265 ABTB1Q969K4 478 aaPredicted RBP10.73□□□□□ -0.69
USP54-205ENST00000424265 SUN2Q9UH99 717 aa10.73□□□□□ -0.69
USP54-205ENST00000424265 NUP188Q5SRE5 1749 aa10.73□□□□□ -0.69
USP54-205ENST00000424265 TMEM232C9JQI7 657 aa10.73□□□□□ -0.69
USP54-205ENST00000424265 STXBP3O00186 592 aa10.73□□□□□ -0.69
USP54-205ENST00000424265 SPTLC2O15270 562 aa10.73□□□□□ -0.69
USP54-205ENST00000424265 EIF3HO15372 352 aaKnown RBP eCLIP10.73□□□□□ -0.69
USP54-205ENST00000424265 GH2P01242 217 aa10.73□□□□□ -0.69
USP54-205ENST00000424265 ZNF24P17028 368 aa10.73□□□□□ -0.69
USP54-205ENST00000424265 GRM4Q14833 912 aa10.73□□□□□ -0.69
USP54-205ENST00000424265 TSR1Q2NL82 804 aaKnown RBP10.73□□□□□ -0.69
USP54-205ENST00000424265 APLFQ8IW19 511 aaPredicted RBP10.73□□□□□ -0.69
USP54-205ENST00000424265 FBF1Q8TES7 1133 aa10.73□□□□□ -0.69
USP54-205ENST00000424265 NCOA5Q9HCD5 579 aaKnown RBP10.73□□□□□ -0.69
USP54-205ENST00000424265 SCN7AQ01118 1682 aa10.73□□□□□ -0.69
USP54-205ENST00000424265 NUP98P52948 1817 aa10.72□□□□□ -0.69
USP54-205ENST00000424265 SYDE2Q5VT97 1194 aa10.72□□□□□ -0.69
USP54-205ENST00000424265 WDR75Q8IWA0 830 aaKnown RBP10.72□□□□□ -0.69
USP54-205ENST00000424265 SDR16C5Q8N3Y7 309 aa10.72□□□□□ -0.69
USP54-205ENST00000424265 SLC39A2Q9NP94 309 aa10.72□□□□□ -0.69
USP54-205ENST00000424265 YY1P25490 414 aa10.72□□□□□ -0.69
USP54-205ENST00000424265 MAP3K9P80192 1104 aa10.72□□□□□ -0.69
USP54-205ENST00000424265 DEUP1Q05D60 604 aa10.72□□□□□ -0.69
USP54-205ENST00000424265 IQCEQ6IPM2 695 aa10.72□□□□□ -0.69
USP54-205ENST00000424265 FASTKD5Q7L8L6 764 aaKnown RBP10.72□□□□□ -0.69
USP54-205ENST00000424265 CCDC13Q8IYE1 715 aa10.72□□□□□ -0.69
USP54-205ENST00000424265 HNRNPLLQ8WVV9 542 aaKnown RBP10.72□□□□□ -0.69
USP54-205ENST00000424265 WRNIP1Q96S55 665 aa10.72□□□□□ -0.69
USP54-205ENST00000424265 MAP2K7O14733 419 aa10.72□□□□□ -0.69
USP54-205ENST00000424265 FLOT1O75955 427 aa10.72□□□□□ -0.69
USP54-205ENST00000424265 IRAK1P51617 712 aa10.72□□□□□ -0.69
USP54-205ENST00000424265 EXOSC10Q01780 885 aaKnown RBP10.72□□□□□ -0.69
USP54-205ENST00000424265 TAF11Q15544 211 aa10.72□□□□□ -0.69
USP54-205ENST00000424265 BZW1Q7L1Q6 419 aaKnown RBP10.72□□□□□ -0.69
USP54-205ENST00000424265 IQCF2Q8IXL9 164 aa10.72□□□□□ -0.69
USP54-205ENST00000424265 FERMT2Q96AC1 680 aa10.72□□□□□ -0.69
USP54-205ENST00000424265 CLSTN2Q9H4D0 955 aa10.72□□□□□ -0.69
USP54-205ENST00000424265 ZFATQ9P243 1243 aa10.72□□□□□ -0.69
USP54-205ENST00000424265 FBXO40Q9UH90 709 aa10.72□□□□□ -0.69
USP54-205ENST00000424265 ITM2BQ9Y287 266 aa10.72□□□□□ -0.69
USP54-205ENST00000424265 CYP2D7A0A087X1C5 515 aa10.72□□□□□ -0.69
USP54-205ENST00000424265 USP17L10C9JJH3 530 aa10.72□□□□□ -0.69
USP54-205ENST00000424265 GDF11O95390 407 aa10.72□□□□□ -0.69
USP54-205ENST00000424265 YEATS4O95619 227 aa10.72□□□□□ -0.69
USP54-205ENST00000424265 RASSF7Q02833 373 aa10.72□□□□□ -0.69
USP54-205ENST00000424265 FSIP1Q8NA03 581 aa10.72□□□□□ -0.69
USP54-205ENST00000424265 MRPS27Q92552 414 aaKnown RBP10.72□□□□□ -0.69
USP54-205ENST00000424265 SYT17Q9BSW7 474 aa10.72□□□□□ -0.69
USP54-205ENST00000424265 MYL10Q9BUA6 226 aa10.72□□□□□ -0.69
USP54-205ENST00000424265 EPB41L4AQ9HCS5 686 aaPredicted RBP10.72□□□□□ -0.69
USP54-205ENST00000424265 HAUS2Q9NVX0 235 aa10.72□□□□□ -0.69
USP54-205ENST00000424265 RMND1Q9NWS8 449 aa10.72□□□□□ -0.69
USP54-205ENST00000424265 CTAGE9A4FU28 777 aa10.71□□□□□ -0.69
USP54-205ENST00000424265 GCOM1H8Y6P7 765 aaPredicted RBP10.71□□□□□ -0.69
USP54-205ENST00000424265 POLR2MP0CAP2 368 aa10.71□□□□□ -0.69
USP54-205ENST00000424265 CYP2D6P10635 497 aa10.71□□□□□ -0.69
USP54-205ENST00000424265 PRKG1Q13976 671 aa10.71□□□□□ -0.69
USP54-205ENST00000424265 ZYXQ15942 572 aaKnown RBP10.71□□□□□ -0.69
USP54-205ENST00000424265 MIS18BP1Q6P0N0 1132 aa10.71□□□□□ -0.69
USP54-205ENST00000424265 BLIDQ8IZY5 108 aa10.71□□□□□ -0.69
USP54-205ENST00000424265 KIFC2Q96AC6 838 aa10.71□□□□□ -0.69
USP54-205ENST00000424265 BEGAINQ9BUH8 593 aa10.71□□□□□ -0.69
USP54-205ENST00000424265 FOXP1Q9H334 677 aaPredicted RBP10.71□□□□□ -0.69
USP54-205ENST00000424265 HOXC10Q9NYD6 342 aa10.71□□□□□ -0.69
USP54-205ENST00000424265 GGA3Q9NZ52 723 aa10.71□□□□□ -0.69
USP54-205ENST00000424265 RABL2AQ9UBK7 228 aaPredicted RBP10.71□□□□□ -0.69
USP54-205ENST00000424265 LSM1O15116 133 aaKnown RBP10.71□□□□□ -0.69
USP54-205ENST00000424265 VEGFAP15692 232 aaPredicted RBP10.71□□□□□ -0.69
USP54-205ENST00000424265 KRT79Q5XKE5 535 aa10.71□□□□□ -0.69
USP54-205ENST00000424265 DTHD1Q6ZMT9 781 aa10.71□□□□□ -0.69
USP54-205ENST00000424265 GADL1Q6ZQY3 521 aa10.71□□□□□ -0.69
USP54-205ENST00000424265 TMTC3Q6ZXV5 915 aa10.71□□□□□ -0.69
USP54-205ENST00000424265 TEX9Q8N6V9 391 aa10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms