RNA–Protein interactions for RNA: ENST00000423636.6

PTPRN-204, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene PTPRN, Length 3,313 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-204ENST00000423636 CCP110O43303 1012 aa13.23□□□□□ -0.29
PTPRN-204ENST00000423636 AKR1B10O60218 316 aa13.23□□□□□ -0.29
PTPRN-204ENST00000423636 RASSF7Q02833 373 aa13.23□□□□□ -0.29
PTPRN-204ENST00000423636 KCNB1Q14721 858 aa13.23□□□□□ -0.29
PTPRN-204ENST00000423636 TMCO3Q6UWJ1 677 aa13.23□□□□□ -0.29
PTPRN-204ENST00000423636 UNC13DQ70J99 1090 aa13.23□□□□□ -0.29
PTPRN-204ENST00000423636 TMTC1Q8IUR5 882 aa13.23□□□□□ -0.29
PTPRN-204ENST00000423636 CCDC42Q96M95 316 aa13.23□□□□□ -0.29
PTPRN-204ENST00000423636 AK8Q96MA6 479 aa13.23□□□□□ -0.29
PTPRN-204ENST00000423636 RAB34Q9BZG1 259 aa13.23□□□□□ -0.29
PTPRN-204ENST00000423636 ABCB11O95342 1321 aa13.23□□□□□ -0.29
PTPRN-204ENST00000423636 MSH4O15457 936 aa13.23□□□□□ -0.29
PTPRN-204ENST00000423636 LRRN2O75325 713 aa13.23□□□□□ -0.29
PTPRN-204ENST00000423636 NMT1P30419 496 aaKnown RBP13.23□□□□□ -0.29
PTPRN-204ENST00000423636 FAM193AP78312 1265 aa13.23□□□□□ -0.29
PTPRN-204ENST00000423636 MTERF4Q7Z6M4 381 aaKnown RBP13.23□□□□□ -0.29
PTPRN-204ENST00000423636 MYOCDQ8IZQ8 938 aa13.23□□□□□ -0.29
PTPRN-204ENST00000423636 JAKMIP2Q96AA8 810 aa13.23□□□□□ -0.29
PTPRN-204ENST00000423636 DLEC1Q9Y238 1755 aa13.22□□□□□ -0.29
PTPRN-204ENST00000423636 RGL2O15211 777 aa13.22□□□□□ -0.29
PTPRN-204ENST00000423636 DNM2P50570 870 aa13.22□□□□□ -0.29
PTPRN-204ENST00000423636 CAGE1Q8TC20 777 aa13.22□□□□□ -0.29
PTPRN-204ENST00000423636 DHTKD1Q96HY7 919 aaPredicted RBP13.22□□□□□ -0.29
PTPRN-204ENST00000423636 REEP2Q9BRK0 252 aa13.22□□□□□ -0.29
PTPRN-204ENST00000423636 ARHGAP20Q9P2F6 1191 aa13.22□□□□□ -0.29
PTPRN-204ENST00000423636 ZNF70Q9UC06 446 aaPredicted RBP13.22□□□□□ -0.29
PTPRN-204ENST00000423636 SALL4Q9UJQ4 1053 aa13.22□□□□□ -0.29
PTPRN-204ENST00000423636 USP20Q9Y2K6 914 aa13.22□□□□□ -0.29
PTPRN-204ENST00000423636 SAMM50Q9Y512 469 aa13.22□□□□□ -0.29
PTPRN-204ENST00000423636 TMCO5BA8MYB1 307 aa13.22□□□□□ -0.29
PTPRN-204ENST00000423636 LAD1O00515 517 aa13.22□□□□□ -0.29
PTPRN-204ENST00000423636 GCNT3O95395 438 aa13.22□□□□□ -0.29
PTPRN-204ENST00000423636 ARP10275 920 aa13.22□□□□□ -0.29
PTPRN-204ENST00000423636 CYP11B2P19099 503 aa13.22□□□□□ -0.29
PTPRN-204ENST00000423636 CLK2P49760 499 aaKnown RBP13.22□□□□□ -0.29
PTPRN-204ENST00000423636 ADAM9Q13443 819 aa13.22□□□□□ -0.29
PTPRN-204ENST00000423636 RAPGEF1Q13905 1077 aa13.22□□□□□ -0.29
PTPRN-204ENST00000423636 VWA3BQ502W6 1294 aa13.22□□□□□ -0.29
PTPRN-204ENST00000423636 CC2D2BQ6DHV5 1058 aa13.22□□□□□ -0.29
PTPRN-204ENST00000423636 TMEM179Q6ZVK1 233 aa13.22□□□□□ -0.29
PTPRN-204ENST00000423636 MMS19Q96T76 1030 aa13.22□□□□□ -0.29
PTPRN-204ENST00000423636 LSM14BQ9BX40 385 aaKnown RBP13.22□□□□□ -0.29
PTPRN-204ENST00000423636 THAP9Q9H5L6 903 aa13.22□□□□□ -0.29
PTPRN-204ENST00000423636 ZNHIT6Q9NWK9 470 aaKnown RBP13.22□□□□□ -0.29
PTPRN-204ENST00000423636 CAPN6Q9Y6Q1 641 aa13.22□□□□□ -0.29
PTPRN-204ENST00000423636 MYH4Q9Y623 1939 aa13.22□□□□□ -0.29
PTPRN-204ENST00000423636 PLSCR1O15162 318 aa13.21□□□□□ -0.29
PTPRN-204ENST00000423636 N4BP1O75113 896 aaKnown RBP13.21□□□□□ -0.29
PTPRN-204ENST00000423636 SLC7A5Q01650 507 aa13.21□□□□□ -0.29
PTPRN-204ENST00000423636 C2orf54Q08AI8 447 aa13.21□□□□□ -0.29
PTPRN-204ENST00000423636 SCFD1Q8WVM8 642 aa13.21□□□□□ -0.29
PTPRN-204ENST00000423636 EMILIN3Q9NT22 766 aa13.21□□□□□ -0.29
PTPRN-204ENST00000423636 STK32BQ9NY57 414 aa13.21□□□□□ -0.29
PTPRN-204ENST00000423636 TMOD2Q9NZR1 351 aa13.21□□□□□ -0.29
PTPRN-204ENST00000423636 CHORDC1Q9UHD1 332 aaPredicted RBP13.21□□□□□ -0.29
PTPRN-204ENST00000423636 FHOD1Q9Y613 1164 aa13.21□□□□□ -0.29
PTPRN-204ENST00000423636 SLC9A1P19634 815 aa13.21□□□□□ -0.29
PTPRN-204ENST00000423636 EEF1GP26641 437 aaKnown RBP13.21□□□□□ -0.29
PTPRN-204ENST00000423636 INPP5BP32019 993 aa13.21□□□□□ -0.29
PTPRN-204ENST00000423636 EPS15P42566 896 aa13.21□□□□□ -0.29
PTPRN-204ENST00000423636 FXR2P51116 673 aaKnown RBP eCLIP13.21□□□□□ -0.29
PTPRN-204ENST00000423636 FAM133AQ8N9E0 248 aa13.21□□□□□ -0.29
PTPRN-204ENST00000423636 DYDC2Q96IM9 177 aa13.21□□□□□ -0.29
PTPRN-204ENST00000423636 PYM1Q9BRP8 204 aaKnown RBP13.21□□□□□ -0.29
PTPRN-204ENST00000423636 WDR18Q9BV38 432 aa13.21□□□□□ -0.29
PTPRN-204ENST00000423636 PACSIN1Q9BY11 444 aa13.21□□□□□ -0.29
PTPRN-204ENST00000423636 ZNF341Q9BYN7 854 aa13.21□□□□□ -0.29
PTPRN-204ENST00000423636 WRAP73Q9P2S5 460 aaPredicted RBP13.21□□□□□ -0.29
PTPRN-204ENST00000423636 BICDL2A1A5D9 508 aa13.21□□□□□ -0.3
PTPRN-204ENST00000423636 STAT2P52630 851 aa13.21□□□□□ -0.3
PTPRN-204ENST00000423636 NAPGQ99747 312 aaPredicted RBP13.21□□□□□ -0.3
PTPRN-204ENST00000423636 CAPN11Q9UMQ6 739 aa13.21□□□□□ -0.3
PTPRN-204ENST00000423636 LAMA2P24043 3122 aaKnown RBP13.2□□□□□ -0.3
PTPRN-204ENST00000423636 NFIBO00712 420 aa13.2□□□□□ -0.3
PTPRN-204ENST00000423636 ALAS1P13196 640 aa13.2□□□□□ -0.3
PTPRN-204ENST00000423636 NR2F2P24468 414 aa13.2□□□□□ -0.3
PTPRN-204ENST00000423636 LLGL1Q15334 1064 aa13.2□□□□□ -0.3
PTPRN-204ENST00000423636 UTP14CQ5TAP6 766 aaKnown RBP13.2□□□□□ -0.3
PTPRN-204ENST00000423636 CENPPQ6IPU0 288 aa13.2□□□□□ -0.3
PTPRN-204ENST00000423636 TTLL6Q8N841 843 aa13.2□□□□□ -0.3
PTPRN-204ENST00000423636 IL31RAQ8NI17 732 aa13.2□□□□□ -0.3
PTPRN-204ENST00000423636 CNKSR1Q969H4 720 aa13.2□□□□□ -0.3
PTPRN-204ENST00000423636 WNK4Q96J92 1243 aa13.2□□□□□ -0.3
PTPRN-204ENST00000423636 MS4A14Q96JA4 679 aa13.2□□□□□ -0.3
PTPRN-204ENST00000423636 CCDC17Q96LX7 622 aa13.2□□□□□ -0.3
PTPRN-204ENST00000423636 OGFRQ9NZT2 677 aa13.2□□□□□ -0.3
PTPRN-204ENST00000423636 SPDYE2BA6NHP3 402 aa13.2□□□□□ -0.3
PTPRN-204ENST00000423636 SPDYE6P0CI01 402 aa13.2□□□□□ -0.3
PTPRN-204ENST00000423636 SPATA31C1P0DKV0 1188 aa13.2□□□□□ -0.3
PTPRN-204ENST00000423636 MYCLP12524 364 aaPredicted RBP13.2□□□□□ -0.3
PTPRN-204ENST00000423636 H2AFXP16104 143 aaPredicted RBP13.2□□□□□ -0.3
PTPRN-204ENST00000423636 VSNL1P62760 191 aa13.2□□□□□ -0.3
PTPRN-204ENST00000423636 KCNMA1Q12791 1236 aa13.2□□□□□ -0.3
PTPRN-204ENST00000423636 PCIF1Q9H4Z3 704 aa13.2□□□□□ -0.3
PTPRN-204ENST00000423636 RAVER2Q9HCJ3 691 aaKnown RBP13.2□□□□□ -0.3
PTPRN-204ENST00000423636 HYOU1Q9Y4L1 999 aa13.2□□□□□ -0.3
PTPRN-204ENST00000423636 TELO2Q9Y4R8 837 aa13.2□□□□□ -0.3
PTPRN-204ENST00000423636 PDE2AO00408 941 aaPredicted RBP13.19□□□□□ -0.3
PTPRN-204ENST00000423636 IPO7O95373 1038 aaKnown RBP13.19□□□□□ -0.3
PTPRN-204ENST00000423636 PLA2G4AP47712 749 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms