RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 A0A1W2PQ27 194 aa3.39□□□□□ -1.87
VPS13A-208ENST00000423463 A0A1W2PQ45 241 aaPredicted RBP3.39□□□□□ -1.87
VPS13A-208ENST00000423463 A0A1W2PQ64 194 aa3.39□□□□□ -1.87
VPS13A-208ENST00000423463 A0A1W2PQC6 194 aa3.39□□□□□ -1.87
VPS13A-208ENST00000423463 A0A1W2PQD8 194 aa3.39□□□□□ -1.87
VPS13A-208ENST00000423463 A0A1W2PQU0 124 aa3.39□□□□□ -1.87
VPS13A-208ENST00000423463 A0A1W2PQY0 241 aa3.39□□□□□ -1.87
VPS13A-208ENST00000423463 FAM221BA6H8Z2 402 aa3.39□□□□□ -1.87
VPS13A-208ENST00000423463 NUDT19A8MXV4 375 aa3.39□□□□□ -1.87
VPS13A-208ENST00000423463 SNRPB2P08579 225 aaKnown RBP3.39□□□□□ -1.87
VPS13A-208ENST00000423463 KCNJ6P48051 423 aa3.39□□□□□ -1.87
VPS13A-208ENST00000423463 MVKQ03426 396 aa3.39□□□□□ -1.87
VPS13A-208ENST00000423463 ZNF124Q15973 351 aa3.39□□□□□ -1.87
VPS13A-208ENST00000423463 CCDC103Q8IW40 242 aa3.39□□□□□ -1.87
VPS13A-208ENST00000423463 CRACR2BQ8N4Y2 399 aaPredicted RBP3.39□□□□□ -1.87
VPS13A-208ENST00000423463 TMEM145Q8NBT3 493 aa3.39□□□□□ -1.87
VPS13A-208ENST00000423463 IER2Q9BTL4 223 aa3.39□□□□□ -1.87
VPS13A-208ENST00000423463 KRTAP4-8Q9BYQ9 185 aa3.39□□□□□ -1.87
VPS13A-208ENST00000423463 CWC22Q9HCG8 908 aaKnown RBP3.39□□□□□ -1.87
VPS13A-208ENST00000423463 DCP1AQ9NPI6 582 aaPredicted RBP3.39□□□□□ -1.87
VPS13A-208ENST00000423463 TERF2IPQ9NYB0 399 aa3.39□□□□□ -1.87
VPS13A-208ENST00000423463 HCFC2Q9Y5Z7 792 aa3.39□□□□□ -1.87
VPS13A-208ENST00000423463 PPIP5K1Q6PFW1 1433 aa3.39□□□□□ -1.87
VPS13A-208ENST00000423463 KIF1AQ12756 1690 aa3.39□□□□□ -1.87
VPS13A-208ENST00000423463 TBC1D8O95759 1140 aa3.39□□□□□ -1.87
VPS13A-208ENST00000423463 L1CAMP32004 1257 aa3.39□□□□□ -1.87
VPS13A-208ENST00000423463 INF2Q27J81 1249 aa3.39□□□□□ -1.87
VPS13A-208ENST00000423463 MTERF2Q49AM1 385 aa3.39□□□□□ -1.87
VPS13A-208ENST00000423463 HLA-DQA1Q5Y7H0 255 aa3.39□□□□□ -1.87
VPS13A-208ENST00000423463 ZNF772Q68DY9 489 aaPredicted RBP3.39□□□□□ -1.87
VPS13A-208ENST00000423463 DENND5AQ6IQ26 1287 aa3.39□□□□□ -1.87
VPS13A-208ENST00000423463 HDGFL2Q7Z4V5 671 aaPredicted RBP3.39□□□□□ -1.87
VPS13A-208ENST00000423463 FRS2Q8WU20 508 aa3.39□□□□□ -1.87
VPS13A-208ENST00000423463 SGPP1Q9BX95 441 aa3.39□□□□□ -1.87
VPS13A-208ENST00000423463 SLC12A5Q9H2X9 1139 aa3.39□□□□□ -1.87
VPS13A-208ENST00000423463 PLA2G2DQ9UNK4 145 aa3.39□□□□□ -1.87
VPS13A-208ENST00000423463 TNS3Q68CZ2 1445 aa3.39□□□□□ -1.87
VPS13A-208ENST00000423463 USP32Q8NFA0 1604 aa3.38□□□□□ -1.87
VPS13A-208ENST00000423463 ARNTLO00327 626 aa3.38□□□□□ -1.87
VPS13A-208ENST00000423463 DIAPH1O60610 1272 aaKnown RBP3.38□□□□□ -1.87
VPS13A-208ENST00000423463 HSPA5P11021 654 aaKnown RBP3.38□□□□□ -1.87
VPS13A-208ENST00000423463 PAMP19021 973 aa3.38□□□□□ -1.87
VPS13A-208ENST00000423463 CYP4F8P98187 520 aa3.38□□□□□ -1.87
VPS13A-208ENST00000423463 RASA3Q14644 834 aa3.38□□□□□ -1.87
VPS13A-208ENST00000423463 FMNL2Q96PY5 1086 aa3.38□□□□□ -1.87
VPS13A-208ENST00000423463 SLC6A17Q9H1V8 727 aa3.38□□□□□ -1.87
VPS13A-208ENST00000423463 EPB41L4BQ9H329 900 aa3.38□□□□□ -1.87
VPS13A-208ENST00000423463 ARHGEF4Q9NR80 690 aa3.38□□□□□ -1.87
VPS13A-208ENST00000423463 RGS17Q9UGC6 210 aaPredicted RBP3.38□□□□□ -1.87
VPS13A-208ENST00000423463 FBXL7Q9UJT9 491 aa3.38□□□□□ -1.87
VPS13A-208ENST00000423463 MSRB2Q9Y3D2 182 aa3.38□□□□□ -1.87
VPS13A-208ENST00000423463 TTC21AQ8NDW8 1320 aa3.38□□□□□ -1.87
VPS13A-208ENST00000423463 NINLQ9Y2I6 1382 aa3.38□□□□□ -1.87
VPS13A-208ENST00000423463 MED1Q15648 1581 aaPredicted RBP3.38□□□□□ -1.87
VPS13A-208ENST00000423463 CPSF1Q10570 1443 aaKnown RBP3.38□□□□□ -1.87
VPS13A-208ENST00000423463 MYOCOSA0A1B0GUC4 107 aa3.38□□□□□ -1.87
VPS13A-208ENST00000423463 A0A1W2PQJ5 194 aa3.38□□□□□ -1.87
VPS13A-208ENST00000423463 C7orf72A4D263 438 aa3.38□□□□□ -1.87
VPS13A-208ENST00000423463 WTIPA6NIX2 430 aaPredicted RBP3.38□□□□□ -1.87
VPS13A-208ENST00000423463 AGRPO00253 132 aa3.38□□□□□ -1.87
VPS13A-208ENST00000423463 PDPK1O15530 556 aa3.38□□□□□ -1.87
VPS13A-208ENST00000423463 ENDOUP21128 410 aaKnown RBP3.38□□□□□ -1.87
VPS13A-208ENST00000423463 GFRA1P56159 465 aa3.38□□□□□ -1.87
VPS13A-208ENST00000423463 SERINC3Q13530 473 aa3.38□□□□□ -1.87
VPS13A-208ENST00000423463 BICRALQ6AI39 1079 aa3.38□□□□□ -1.87
VPS13A-208ENST00000423463 GALNT18Q6P9A2 607 aa3.38□□□□□ -1.87
VPS13A-208ENST00000423463 TEX2Q8IWB9 1127 aa3.38□□□□□ -1.87
VPS13A-208ENST00000423463 SRPK1Q96SB4 655 aaKnown RBP3.38□□□□□ -1.87
VPS13A-208ENST00000423463 CYP26B1Q9NR63 512 aa3.38□□□□□ -1.87
VPS13A-208ENST00000423463 SNTG2Q9NY99 539 aa3.38□□□□□ -1.87
VPS13A-208ENST00000423463 AFF2P51816 1311 aa3.38□□□□□ -1.87
VPS13A-208ENST00000423463 TTC21BQ7Z4L5 1316 aa3.38□□□□□ -1.87
VPS13A-208ENST00000423463 SHPRHQ149N8 1683 aa3.38□□□□□ -1.87
VPS13A-208ENST00000423463 QRICH2Q9H0J4 1663 aa3.38□□□□□ -1.87
VPS13A-208ENST00000423463 USP6P35125 1406 aa3.37□□□□□ -1.87
VPS13A-208ENST00000423463 SSH2Q76I76 1423 aa3.37□□□□□ -1.87
VPS13A-208ENST00000423463 LRP6O75581 1613 aa3.37□□□□□ -1.87
VPS13A-208ENST00000423463 BLACEA4D250 179 aa3.37□□□□□ -1.87
VPS13A-208ENST00000423463 PPP1R11O60927 126 aaPredicted RBP3.37□□□□□ -1.87
VPS13A-208ENST00000423463 LCP1P13796 627 aa3.37□□□□□ -1.87
VPS13A-208ENST00000423463 FPR2P25090 351 aa3.37□□□□□ -1.87
VPS13A-208ENST00000423463 MESP2Q0VG99 397 aa3.37□□□□□ -1.87
VPS13A-208ENST00000423463 BMS1Q14692 1282 aaKnown RBP3.37□□□□□ -1.87
VPS13A-208ENST00000423463 PPIL6Q8IXY8 311 aa3.37□□□□□ -1.87
VPS13A-208ENST00000423463 NPLOC4Q8TAT6 608 aa3.37□□□□□ -1.87
VPS13A-208ENST00000423463 C1orf159Q96HA4 380 aa3.37□□□□□ -1.87
VPS13A-208ENST00000423463 DEPDC7Q96QD5 511 aa3.37□□□□□ -1.87
VPS13A-208ENST00000423463 TNFRSF12AQ9NP84 129 aa3.37□□□□□ -1.87
VPS13A-208ENST00000423463 MARCH2Q9P0N8 246 aa3.37□□□□□ -1.87
VPS13A-208ENST00000423463 KTN1Q86UP2 1357 aaKnown RBP3.37□□□□□ -1.87
VPS13A-208ENST00000423463 FAM83GA6ND36 823 aa3.37□□□□□ -1.87
VPS13A-208ENST00000423463 OR14I1A6ND48 311 aa3.37□□□□□ -1.87
VPS13A-208ENST00000423463 ARL4AP40617 200 aa3.37□□□□□ -1.87
VPS13A-208ENST00000423463 SSRP1Q08945 709 aaKnown RBP3.37□□□□□ -1.87
VPS13A-208ENST00000423463 RBL2Q08999 1139 aa3.37□□□□□ -1.87
VPS13A-208ENST00000423463 SNX17Q15036 470 aa3.37□□□□□ -1.87
VPS13A-208ENST00000423463 RAB3GAP1Q15042 981 aa3.37□□□□□ -1.87
VPS13A-208ENST00000423463 ST13P5Q8NFI4 369 aaPredicted RBP3.37□□□□□ -1.87
VPS13A-208ENST00000423463 BCAS3Q9H6U6 928 aa3.37□□□□□ -1.87
VPS13A-208ENST00000423463 ACSL6Q9UKU0 697 aa3.37□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms