RNA–Protein interactions for RNA: ENST00000421223.5

DDX56-203, Transcript of DEAD-box helicase 56, humanhuman

TSL 2

Gene DDX56, Length 3,028 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-203ENST00000421223 LRRC27Q9C0I9 530 aa12.14□□□□□ -0.47
DDX56-203ENST00000421223 BHMT2Q9H2M3 363 aa12.14□□□□□ -0.47
DDX56-203ENST00000421223 ARGLU1Q9NWB6 273 aaPredicted RBP12.14□□□□□ -0.47
DDX56-203ENST00000421223 DNM3Q9UQ16 869 aa12.14□□□□□ -0.47
DDX56-203ENST00000421223 REXO2Q9Y3B8 237 aaKnown RBP12.14□□□□□ -0.47
DDX56-203ENST00000421223 A0A1W2PQC6 194 aa12.13□□□□□ -0.47
DDX56-203ENST00000421223 RASSF10A6NK89 507 aa12.13□□□□□ -0.47
DDX56-203ENST00000421223 EFCAB8A8MWE9 144 aa12.13□□□□□ -0.47
DDX56-203ENST00000421223 ZBTB39O15060 712 aa12.13□□□□□ -0.47
DDX56-203ENST00000421223 AKR1B10O60218 316 aa12.13□□□□□ -0.47
DDX56-203ENST00000421223 ZBTB7AO95365 584 aa12.13□□□□□ -0.47
DDX56-203ENST00000421223 DNA2P51530 1060 aa12.13□□□□□ -0.47
DDX56-203ENST00000421223 NAP1L1P55209 391 aaKnown RBP12.13□□□□□ -0.47
DDX56-203ENST00000421223 CHMP4BP1P59074 171 aa12.13□□□□□ -0.47
DDX56-203ENST00000421223 SF3B2Q13435 895 aaKnown RBP12.13□□□□□ -0.47
DDX56-203ENST00000421223 DGKZQ13574 1117 aa12.13□□□□□ -0.47
DDX56-203ENST00000421223 POTEAQ6S8J7 498 aa12.13□□□□□ -0.47
DDX56-203ENST00000421223 MAEAQ7L5Y9 396 aa12.13□□□□□ -0.47
DDX56-203ENST00000421223 NAPGQ99747 312 aaPredicted RBP12.13□□□□□ -0.47
DDX56-203ENST00000421223 ST7Q9NRC1 585 aa12.13□□□□□ -0.47
DDX56-203ENST00000421223 FGFR1OPO95684 399 aaKnown RBP12.13□□□□□ -0.47
DDX56-203ENST00000421223 TCERG1LQ5VWI1 586 aa12.13□□□□□ -0.47
DDX56-203ENST00000421223 PSMB7Q99436 277 aa12.13□□□□□ -0.47
DDX56-203ENST00000421223 MRIQ9BWK5 157 aa12.13□□□□□ -0.47
DDX56-203ENST00000421223 GLT8D2Q9H1C3 349 aa12.13□□□□□ -0.47
DDX56-203ENST00000421223 EMILIN3Q9NT22 766 aa12.13□□□□□ -0.47
DDX56-203ENST00000421223 ZNF446Q9NWS9 450 aa12.13□□□□□ -0.47
DDX56-203ENST00000421223 RSPH10B2B2RC85 870 aa12.13□□□□□ -0.47
DDX56-203ENST00000421223 MSH4O15457 936 aa12.13□□□□□ -0.47
DDX56-203ENST00000421223 PRPF6O94906 941 aaKnown RBP12.13□□□□□ -0.47
DDX56-203ENST00000421223 RSPH10BP0C881 870 aa12.13□□□□□ -0.47
DDX56-203ENST00000421223 CYP11B2P19099 503 aa12.13□□□□□ -0.47
DDX56-203ENST00000421223 CYLC1P35663 651 aaPredicted RBP12.13□□□□□ -0.47
DDX56-203ENST00000421223 ARHGAP25P42331 645 aa12.13□□□□□ -0.47
DDX56-203ENST00000421223 PLS1Q14651 629 aa12.13□□□□□ -0.47
DDX56-203ENST00000421223 SPA17Q15506 151 aa12.13□□□□□ -0.47
DDX56-203ENST00000421223 NIM1KQ8IY84 436 aa12.13□□□□□ -0.47
DDX56-203ENST00000421223 SLFN12Q8IYM2 578 aa12.13□□□□□ -0.47
DDX56-203ENST00000421223 ERMNQ8TAM6 284 aa12.13□□□□□ -0.47
DDX56-203ENST00000421223 JAKMIP2Q96AA8 810 aa12.13□□□□□ -0.47
DDX56-203ENST00000421223 LACRTQ9GZZ8 138 aa12.13□□□□□ -0.47
DDX56-203ENST00000421223 ZBTB21Q9ULJ3 1066 aa12.13□□□□□ -0.47
DDX56-203ENST00000421223 KDM3AQ9Y4C1 1321 aa12.12□□□□□ -0.47
DDX56-203ENST00000421223 ZBED6P86452 979 aa12.12□□□□□ -0.47
DDX56-203ENST00000421223 ADAM9Q13443 819 aa12.12□□□□□ -0.47
DDX56-203ENST00000421223 MAN2A1Q16706 1144 aa12.12□□□□□ -0.47
DDX56-203ENST00000421223 HAUS3Q68CZ6 603 aa12.12□□□□□ -0.47
DDX56-203ENST00000421223 GOLGA1Q92805 767 aa12.12□□□□□ -0.47
DDX56-203ENST00000421223 RCCD1A6NED2 376 aa12.12□□□□□ -0.47
DDX56-203ENST00000421223 PPP1R2P41236 205 aa12.12□□□□□ -0.47
DDX56-203ENST00000421223 CASP5P51878 434 aa12.12□□□□□ -0.47
DDX56-203ENST00000421223 HERVK_113P62684 666 aa12.12□□□□□ -0.47
DDX56-203ENST00000421223 FKBP3Q00688 224 aaKnown RBP12.12□□□□□ -0.47
DDX56-203ENST00000421223 SFR1Q86XK3 245 aa12.12□□□□□ -0.47
DDX56-203ENST00000421223 NEK11Q8NG66 645 aa12.12□□□□□ -0.47
DDX56-203ENST00000421223 GMCL1Q96IK5 515 aa12.12□□□□□ -0.47
DDX56-203ENST00000421223 DNAJC7Q99615 494 aa12.12□□□□□ -0.47
DDX56-203ENST00000421223 NUP58Q9BVL2 599 aa12.12□□□□□ -0.47
DDX56-203ENST00000421223 PARD6BQ9BYG5 372 aa12.12□□□□□ -0.47
DDX56-203ENST00000421223 GTPBP4Q9BZE4 634 aaKnown RBP12.12□□□□□ -0.47
DDX56-203ENST00000421223 GOPCQ9HD26 462 aa12.12□□□□□ -0.47
DDX56-203ENST00000421223 KCNMB3Q9NPA1 279 aa12.12□□□□□ -0.47
DDX56-203ENST00000421223 CDC23Q9UJX2 597 aa12.12□□□□□ -0.47
DDX56-203ENST00000421223 MYH4Q9Y623 1939 aa12.12□□□□□ -0.47
DDX56-203ENST00000421223 LRRC53A6NM62 1247 aa12.11□□□□□ -0.47
DDX56-203ENST00000421223 EML1O00423 815 aa12.11□□□□□ -0.47
DDX56-203ENST00000421223 CLIC2O15247 247 aa12.11□□□□□ -0.47
DDX56-203ENST00000421223 AP3B2Q13367 1082 aa12.11□□□□□ -0.47
DDX56-203ENST00000421223 GMCL1P1Q8NEA9 526 aa12.11□□□□□ -0.47
DDX56-203ENST00000421223 SH2D3AQ9BRG2 576 aa12.11□□□□□ -0.47
DDX56-203ENST00000421223 IKZF4Q9H2S9 585 aa12.11□□□□□ -0.47
DDX56-203ENST00000421223 JADE2Q9NQC1 790 aa12.11□□□□□ -0.47
DDX56-203ENST00000421223 FAM53CQ9NYF3 392 aa12.11□□□□□ -0.47
DDX56-203ENST00000421223 SMCHD1A6NHR9 2005 aa12.11□□□□□ -0.47
DDX56-203ENST00000421223 OPLAHO14841 1288 aa12.11□□□□□ -0.47
DDX56-203ENST00000421223 COL11A2P13942 1736 aaPredicted RBP12.11□□□□□ -0.47
DDX56-203ENST00000421223 EIF4A3P38919 411 aaKnown RBP12.11□□□□□ -0.47
DDX56-203ENST00000421223 KRT83P78385 493 aa12.11□□□□□ -0.47
DDX56-203ENST00000421223 LRRC63Q05C16 580 aa12.11□□□□□ -0.47
DDX56-203ENST00000421223 ARSHQ5FYA8 562 aa12.11□□□□□ -0.47
DDX56-203ENST00000421223 DCAF17Q5H9S7 520 aaPredicted RBP12.11□□□□□ -0.47
DDX56-203ENST00000421223 FAM151AQ8WW52 585 aa12.11□□□□□ -0.47
DDX56-203ENST00000421223 CAMKK2Q96RR4 588 aa12.11□□□□□ -0.47
DDX56-203ENST00000421223 NAP1L4Q99733 375 aaKnown RBP12.11□□□□□ -0.47
DDX56-203ENST00000421223 REEP2Q9BRK0 252 aa12.11□□□□□ -0.47
DDX56-203ENST00000421223 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.11□□□□□ -0.47
DDX56-203ENST00000421223 COL4A3BPQ9Y5P4 624 aa12.11□□□□□ -0.47
DDX56-203ENST00000421223 GCOM1H8Y6P7 765 aaPredicted RBP12.11□□□□□ -0.47
DDX56-203ENST00000421223 POLR3GO15318 223 aaPredicted RBP12.11□□□□□ -0.47
DDX56-203ENST00000421223 GCNT3O95395 438 aa12.11□□□□□ -0.47
DDX56-203ENST00000421223 POLR2MP0CAP2 368 aa12.11□□□□□ -0.47
DDX56-203ENST00000421223 POLR2FP61218 127 aaKnown RBP12.11□□□□□ -0.47
DDX56-203ENST00000421223 FKBP1AP62942 108 aaKnown RBP12.11□□□□□ -0.47
DDX56-203ENST00000421223 LRCH2Q5VUJ6 765 aa12.11□□□□□ -0.47
DDX56-203ENST00000421223 KSR1Q8IVT5 923 aa12.11□□□□□ -0.47
DDX56-203ENST00000421223 RTKN2Q8IZC4 609 aa12.11□□□□□ -0.47
DDX56-203ENST00000421223 CAGE1Q8TC20 777 aa12.11□□□□□ -0.47
DDX56-203ENST00000421223 SCFD1Q8WVM8 642 aa12.11□□□□□ -0.47
DDX56-203ENST00000421223 AGBL1Q96MI9 1066 aa12.11□□□□□ -0.47
DDX56-203ENST00000421223 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms