RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 ACSF2Q96CM8 615 aaPredicted RBP7.99□□□□□ -1.13
SCN9A-202ENST00000409435 NUF2Q9BZD4 464 aa7.99□□□□□ -1.13
SCN9A-202ENST00000409435 PCDHB13Q9Y5F0 798 aa7.99□□□□□ -1.13
SCN9A-202ENST00000409435 PI4K2BG5E9Z4 385 aa7.99□□□□□ -1.13
SCN9A-202ENST00000409435 K7ENM7 598 aa7.99□□□□□ -1.13
SCN9A-202ENST00000409435 SLU7O95391 586 aaKnown RBP7.99□□□□□ -1.13
SCN9A-202ENST00000409435 BACE1P56817 501 aa7.99□□□□□ -1.13
SCN9A-202ENST00000409435 POSTNQ15063 836 aa7.99□□□□□ -1.13
SCN9A-202ENST00000409435 GALNT17Q6IS24 598 aa7.99□□□□□ -1.13
SCN9A-202ENST00000409435 PI4K2BQ8TCG2 481 aa7.99□□□□□ -1.13
SCN9A-202ENST00000409435 RNF139Q8WU17 664 aa7.99□□□□□ -1.13
SCN9A-202ENST00000409435 KLRG1Q96E93 195 aa7.99□□□□□ -1.13
SCN9A-202ENST00000409435 LARP6Q9BRS8 491 aaKnown RBP7.99□□□□□ -1.13
SCN9A-202ENST00000409435 PCDHA12Q9UN75 941 aa7.99□□□□□ -1.13
SCN9A-202ENST00000409435 YEATS4O95619 227 aa7.98□□□□□ -1.13
SCN9A-202ENST00000409435 URODP06132 367 aa7.98□□□□□ -1.13
SCN9A-202ENST00000409435 MAP2K5Q13163 448 aa7.98□□□□□ -1.13
SCN9A-202ENST00000409435 E2F5Q15329 346 aa7.98□□□□□ -1.13
SCN9A-202ENST00000409435 DCAF17Q5H9S7 520 aaPredicted RBP7.98□□□□□ -1.13
SCN9A-202ENST00000409435 SLC44A5Q8NCS7 719 aa7.98□□□□□ -1.13
SCN9A-202ENST00000409435 IQCGQ9H095 443 aaKnown RBP7.98□□□□□ -1.13
SCN9A-202ENST00000409435 SMARCAD1Q9H4L7 1026 aa7.98□□□□□ -1.13
SCN9A-202ENST00000409435 DYRK4Q9NR20 520 aa7.98□□□□□ -1.13
SCN9A-202ENST00000409435 CTAGE15A4D2H0 777 aa7.98□□□□□ -1.13
SCN9A-202ENST00000409435 WNT10BO00744 389 aa7.98□□□□□ -1.13
SCN9A-202ENST00000409435 PSMA7O14818 248 aa7.98□□□□□ -1.13
SCN9A-202ENST00000409435 EXOC3O60645 756 aa7.98□□□□□ -1.13
SCN9A-202ENST00000409435 CTAGE8P0CG41 777 aa7.98□□□□□ -1.13
SCN9A-202ENST00000409435 HOXA13P31271 388 aaPredicted RBP7.98□□□□□ -1.13
SCN9A-202ENST00000409435 PEX19P40855 299 aa7.98□□□□□ -1.13
SCN9A-202ENST00000409435 KPNA1P52294 538 aaPredicted RBP7.98□□□□□ -1.13
SCN9A-202ENST00000409435 CREB3L3Q68CJ9 461 aa7.98□□□□□ -1.13
SCN9A-202ENST00000409435 CTAGE4Q8IX94 777 aa7.98□□□□□ -1.13
SCN9A-202ENST00000409435 LCORLQ8N3X6 602 aa7.98□□□□□ -1.13
SCN9A-202ENST00000409435 CSGALNACT1Q8TDX6 532 aa7.98□□□□□ -1.13
SCN9A-202ENST00000409435 COLEC11Q9BWP8 271 aa7.98□□□□□ -1.13
SCN9A-202ENST00000409435 NUCKS1Q9H1E3 243 aaKnown RBP7.98□□□□□ -1.13
SCN9A-202ENST00000409435 SDAD1Q9NVU7 687 aaKnown RBP eCLIP7.98□□□□□ -1.132e-6■■■■□ 22.7
SCN9A-202ENST00000409435 ROBO1Q9Y6N7 1651 aa7.98□□□□□ -1.13
SCN9A-202ENST00000409435 COG7P83436 770 aa7.98□□□□□ -1.13
SCN9A-202ENST00000409435 BBS5Q8N3I7 341 aa7.98□□□□□ -1.13
SCN9A-202ENST00000409435 TRPM4Q8TD43 1214 aa7.98□□□□□ -1.13
SCN9A-202ENST00000409435 N4BP2L2Q92802 583 aaPredicted RBP7.98□□□□□ -1.13
SCN9A-202ENST00000409435 TCEANC2Q96MN5 208 aa7.98□□□□□ -1.13
SCN9A-202ENST00000409435 XAB2Q9HCS7 855 aaKnown RBP7.98□□□□□ -1.13
SCN9A-202ENST00000409435 IPPQ9Y573 584 aa7.98□□□□□ -1.13
SCN9A-202ENST00000409435 NEXMIFQ5QGS0 1516 aa7.98□□□□□ -1.13
SCN9A-202ENST00000409435 GOLGA6CA6NDK9 693 aa7.98□□□□□ -1.13
SCN9A-202ENST00000409435 GOLGA6BA6NDN3 693 aa7.98□□□□□ -1.13
SCN9A-202ENST00000409435 ZNF233A6NK53 670 aa7.98□□□□□ -1.13
SCN9A-202ENST00000409435 GOLGA6DP0CG33 693 aa7.98□□□□□ -1.13
SCN9A-202ENST00000409435 VPS41P49754 854 aa7.98□□□□□ -1.13
SCN9A-202ENST00000409435 NOLC1Q14978 699 aaKnown RBP eCLIP7.98□□□□□ -1.13
SCN9A-202ENST00000409435 PPP2R2DQ66LE6 453 aa7.98□□□□□ -1.13
SCN9A-202ENST00000409435 INTS8Q75QN2 995 aaKnown RBP7.98□□□□□ -1.13
SCN9A-202ENST00000409435 PARD3BQ8TEW8 1205 aa7.98□□□□□ -1.13
SCN9A-202ENST00000409435 CCDC77Q9BR77 488 aa7.98□□□□□ -1.13
SCN9A-202ENST00000409435 EVA1BQ9NVM1 165 aa7.98□□□□□ -1.13
SCN9A-202ENST00000409435 GOLGA6AQ9NYA3 693 aa7.98□□□□□ -1.13
SCN9A-202ENST00000409435 LARSQ9P2J5 1176 aaKnown RBP7.98□□□□□ -1.13
SCN9A-202ENST00000409435 CPSF3Q9UKF6 684 aaKnown RBP7.98□□□□□ -1.13
SCN9A-202ENST00000409435 TPX2Q9ULW0 747 aaKnown RBP7.98□□□□□ -1.13
SCN9A-202ENST00000409435 GPR182O15218 404 aa7.97□□□□□ -1.13
SCN9A-202ENST00000409435 EFCAB14O75071 495 aa7.97□□□□□ -1.13
SCN9A-202ENST00000409435 HOXC6P09630 235 aa7.97□□□□□ -1.13
SCN9A-202ENST00000409435 CTNNB1P35222 781 aa7.97□□□□□ -1.13
SCN9A-202ENST00000409435 VEGFBP49765 207 aa7.97□□□□□ -1.13
SCN9A-202ENST00000409435 AK2P54819 239 aa7.97□□□□□ -1.13
SCN9A-202ENST00000409435 HERVK_113P62684 666 aa7.97□□□□□ -1.13
SCN9A-202ENST00000409435 MDM2Q00987 491 aaPredicted RBP7.97□□□□□ -1.13
SCN9A-202ENST00000409435 CCDC85BQ15834 202 aaPredicted RBP7.97□□□□□ -1.13
SCN9A-202ENST00000409435 NOP9Q86U38 636 aaKnown RBP7.97□□□□□ -1.13
SCN9A-202ENST00000409435 FAM83AQ86UY5 434 aa7.97□□□□□ -1.13
SCN9A-202ENST00000409435 NUP88Q99567 741 aaPredicted RBP7.97□□□□□ -1.13
SCN9A-202ENST00000409435 APBA2Q99767 749 aa7.97□□□□□ -1.13
SCN9A-202ENST00000409435 VCX3AQ9NNX9 186 aa7.97□□□□□ -1.13
SCN9A-202ENST00000409435 PIN4Q9Y237 131 aaKnown RBP7.97□□□□□ -1.13
SCN9A-202ENST00000409435 PNMA6FA0A0J9YX94 578 aa7.97□□□□□ -1.13
SCN9A-202ENST00000409435 KRT9P35527 623 aa7.97□□□□□ -1.13
SCN9A-202ENST00000409435 FLT3LGP49771 235 aa7.97□□□□□ -1.13
SCN9A-202ENST00000409435 CYP4A11Q02928 519 aa7.97□□□□□ -1.13
SCN9A-202ENST00000409435 TRIM28Q13263 835 aaKnown RBP7.97□□□□□ -1.13
SCN9A-202ENST00000409435 CEP85LQ5SZL2 805 aa7.97□□□□□ -1.13
SCN9A-202ENST00000409435 SCN4BQ8IWT1 228 aa7.97□□□□□ -1.13
SCN9A-202ENST00000409435 ZNF830Q96NB3 372 aaPredicted RBP7.97□□□□□ -1.13
SCN9A-202ENST00000409435 EIF2AQ9BY44 585 aaKnown RBP7.97□□□□□ -1.13
SCN9A-202ENST00000409435 BACH2Q9BYV9 841 aa7.97□□□□□ -1.13
SCN9A-202ENST00000409435 SCAND2PQ9GZW5 306 aaPredicted RBP7.97□□□□□ -1.13
SCN9A-202ENST00000409435 KMT5AQ9NQR1 393 aa7.97□□□□□ -1.13
SCN9A-202ENST00000409435 ARHGAP23Q9P227 1491 aa7.97□□□□□ -1.13
SCN9A-202ENST00000409435 NEMP1O14524 444 aa7.97□□□□□ -1.13
SCN9A-202ENST00000409435 CYBBP04839 570 aa7.97□□□□□ -1.13
SCN9A-202ENST00000409435 CYP2C9P11712 490 aa7.97□□□□□ -1.13
SCN9A-202ENST00000409435 GJC1P36383 396 aa7.97□□□□□ -1.13
SCN9A-202ENST00000409435 VGLL4Q14135 290 aa7.97□□□□□ -1.13
SCN9A-202ENST00000409435 MYL10Q9BUA6 226 aa7.97□□□□□ -1.13
SCN9A-202ENST00000409435 DSCC1Q9BVC3 393 aa7.97□□□□□ -1.13
SCN9A-202ENST00000409435 CTAGE5O15320 804 aa7.97□□□□□ -1.13
SCN9A-202ENST00000409435 GFAPP14136 432 aa7.97□□□□□ -1.13
SCN9A-202ENST00000409435 BFSP1Q12934 665 aa7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms