RNA–Protein interactions for RNA: ENST00000409025.5

USP39-202, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5 BASIC

Gene USP39, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-202ENST00000409025 CYP11B2P19099 503 aa21.12■□□□□ 0.97
USP39-202ENST00000409025 KCNJ6P48051 423 aa21.12■□□□□ 0.97
USP39-202ENST00000409025 CENPPQ6IPU0 288 aa21.12■□□□□ 0.97
USP39-202ENST00000409025 SYTL5Q8TDW5 730 aaPredicted RBP21.12■□□□□ 0.97
USP39-202ENST00000409025 WDR11Q9BZH6 1224 aa21.12■□□□□ 0.97
USP39-202ENST00000409025 R3HCC1Q9Y3T6 440 aaKnown RBP21.12■□□□□ 0.97
USP39-202ENST00000409025 ARP10275 920 aa21.11■□□□□ 0.97
USP39-202ENST00000409025 YBX3P16989 372 aaKnown RBP eCLIP21.11■□□□□ 0.976e-7■■□□□ 12.2
USP39-202ENST00000409025 DSG3P32926 999 aa21.11■□□□□ 0.97
USP39-202ENST00000409025 PPFIBP1Q86W92 1011 aa21.11■□□□□ 0.97
USP39-202ENST00000409025 SULF1Q8IWU6 871 aa21.11■□□□□ 0.97
USP39-202ENST00000409025 SYT2Q8N9I0 419 aaPredicted RBP21.11■□□□□ 0.97
USP39-202ENST00000409025 TMX1Q9H3N1 280 aa21.11■□□□□ 0.97
USP39-202ENST00000409025 TUFT1Q9NNX1 390 aa21.11■□□□□ 0.97
USP39-202ENST00000409025 KCND1Q9NSA2 647 aa21.11■□□□□ 0.97
USP39-202ENST00000409025 AFG3L2Q9Y4W6 797 aa21.11■□□□□ 0.97
USP39-202ENST00000409025 ITIH6Q6UXX5 1313 aa21.1■□□□□ 0.97
USP39-202ENST00000409025 PSMC6P62333 389 aa21.1■□□□□ 0.97
USP39-202ENST00000409025 CYP4A11Q02928 519 aa21.1■□□□□ 0.97
USP39-202ENST00000409025 COG2Q14746 738 aa21.1■□□□□ 0.97
USP39-202ENST00000409025 FAM26FQ5R3K3 315 aa21.1■□□□□ 0.97
USP39-202ENST00000409025 C9orf131Q5VYM1 1079 aa21.1■□□□□ 0.97
USP39-202ENST00000409025 NIPA1Q7RTP0 329 aa21.1■□□□□ 0.97
USP39-202ENST00000409025 ZFP91Q96JP5 570 aaPredicted RBP21.1■□□□□ 0.97
USP39-202ENST00000409025 TEKT3Q9BXF9 490 aa21.1■□□□□ 0.97
USP39-202ENST00000409025 SEMA6BQ9H3T3 888 aa21.1■□□□□ 0.97
USP39-202ENST00000409025 BCRP11274 1271 aa21.1■□□□□ 0.97
USP39-202ENST00000409025 OAZ1P54368 228 aa21.1■□□□□ 0.97
USP39-202ENST00000409025 RPS6P62753 249 aaKnown RBP21.1■□□□□ 0.97
USP39-202ENST00000409025 MAP3K9P80192 1104 aa21.1■□□□□ 0.97
USP39-202ENST00000409025 GOLGA8FQ08AF8 430 aa21.1■□□□□ 0.97
USP39-202ENST00000409025 GOLGA8DPQ0D2H9 430 aa21.1■□□□□ 0.97
USP39-202ENST00000409025 PABPC4Q13310 644 aaKnown RBP eCLIP21.1■□□□□ 0.971e-7■■■□□ 14.9
USP39-202ENST00000409025 PCNX4Q63HM2 1172 aa21.1■□□□□ 0.97
USP39-202ENST00000409025 TC2NQ8N9U0 490 aa21.1■□□□□ 0.97
USP39-202ENST00000409025 AKR1B15C9JRZ8 316 aaPredicted RBP21.09■□□□□ 0.97
USP39-202ENST00000409025 CHMP2AO43633 222 aa21.09■□□□□ 0.97
USP39-202ENST00000409025 RNF207Q6ZRF8 634 aa21.09■□□□□ 0.97
USP39-202ENST00000409025 CATSPERGQ6ZRH7 1159 aa21.09■□□□□ 0.97
USP39-202ENST00000409025 MYOCDQ8IZQ8 938 aa21.09■□□□□ 0.97
USP39-202ENST00000409025 CCAR2Q8N163 923 aaKnown RBP21.09■□□□□ 0.97
USP39-202ENST00000409025 WNK4Q96J92 1243 aa21.09■□□□□ 0.97
USP39-202ENST00000409025 RIT2Q99578 217 aa21.09■□□□□ 0.97
USP39-202ENST00000409025 HSD17B14Q9BPX1 270 aa21.09■□□□□ 0.97
USP39-202ENST00000409025 RGL1Q9NZL6 768 aa21.09■□□□□ 0.97
USP39-202ENST00000409025 ADAMTS5Q9UNA0 930 aa21.09■□□□□ 0.97
USP39-202ENST00000409025 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP21.09■□□□□ 0.977e-6■■□□□ 12.1
USP39-202ENST00000409025 RLFQ13129 1914 aa21.08■□□□□ 0.97
USP39-202ENST00000409025 FRMPD4Q14CM0 1322 aa21.08■□□□□ 0.97
USP39-202ENST00000409025 NPHP3-ACAD11A0A0J9YXS1 232 aa21.08■□□□□ 0.97
USP39-202ENST00000409025 IPO5O00410 1097 aaKnown RBP21.08■□□□□ 0.97
USP39-202ENST00000409025 EYA4O95677 639 aa21.08■□□□□ 0.97
USP39-202ENST00000409025 FGFR1OPO95684 399 aaKnown RBP21.08■□□□□ 0.97
USP39-202ENST00000409025 TPM2P07951 284 aa21.08■□□□□ 0.97
USP39-202ENST00000409025 ITGB5P18084 799 aa21.08■□□□□ 0.97
USP39-202ENST00000409025 ADKP55263 362 aaKnown RBP21.08■□□□□ 0.97
USP39-202ENST00000409025 LRRC63Q05C16 580 aa21.08■□□□□ 0.97
USP39-202ENST00000409025 ARSHQ5FYA8 562 aa21.08■□□□□ 0.97
USP39-202ENST00000409025 REPS2Q8NFH8 660 aa21.08■□□□□ 0.97
USP39-202ENST00000409025 RBM46Q8TBY0 533 aaKnown RBP21.08■□□□□ 0.97
USP39-202ENST00000409025 TAAR1Q96RJ0 339 aa21.08■□□□□ 0.97
USP39-202ENST00000409025 TSG101Q99816 390 aa21.08■□□□□ 0.97
USP39-202ENST00000409025 RNF146Q9NTX7 359 aa21.08■□□□□ 0.97
USP39-202ENST00000409025 TPM1P09493 284 aa21.08■□□□□ 0.96
USP39-202ENST00000409025 MUTP22033 750 aa21.08■□□□□ 0.96
USP39-202ENST00000409025 UBXN1Q04323 297 aa21.08■□□□□ 0.96
USP39-202ENST00000409025 HERC4Q5GLZ8 1057 aaPredicted RBP21.08■□□□□ 0.96
USP39-202ENST00000409025 FOXR2Q6PJQ5 311 aa21.08■□□□□ 0.96
USP39-202ENST00000409025 NSMFQ6X4W1 530 aa21.08■□□□□ 0.96
USP39-202ENST00000409025 SLC30A10Q6XR72 485 aa21.08■□□□□ 0.96
USP39-202ENST00000409025 IL31RAQ8NI17 732 aa21.08■□□□□ 0.96
USP39-202ENST00000409025 DYDC2Q96IM9 177 aa21.08■□□□□ 0.96
USP39-202ENST00000409025 BAG1Q99933 345 aaPredicted RBP21.08■□□□□ 0.96
USP39-202ENST00000409025 UNC45AQ9H3U1 944 aa21.08■□□□□ 0.96
USP39-202ENST00000409025 UBIAD1Q9Y5Z9 338 aa21.08■□□□□ 0.96
USP39-202ENST00000409025 SNCAIPQ9Y6H5 919 aa21.08■□□□□ 0.96
USP39-202ENST00000409025 FRMD3A2A2Y4 597 aa21.07■□□□□ 0.96
USP39-202ENST00000409025 LGALS16A8MUM7 142 aa21.07■□□□□ 0.96
USP39-202ENST00000409025 ADM5C9JUS6 153 aa21.07■□□□□ 0.96
USP39-202ENST00000409025 PPP1R12BO60237 982 aaPredicted RBP21.07■□□□□ 0.96
USP39-202ENST00000409025 SLITRK3O94933 977 aa21.07■□□□□ 0.96
USP39-202ENST00000409025 KIF20AO95235 890 aa21.07■□□□□ 0.96
USP39-202ENST00000409025 RBL2Q08999 1139 aa21.07■□□□□ 0.96
USP39-202ENST00000409025 VGLL4Q14135 290 aa21.07■□□□□ 0.96
USP39-202ENST00000409025 CTTNQ14247 550 aaKnown RBP21.07■□□□□ 0.96
USP39-202ENST00000409025 LRRC41Q15345 812 aa21.07■□□□□ 0.96
USP39-202ENST00000409025 EPHA7Q15375 998 aa21.07■□□□□ 0.96
USP39-202ENST00000409025 SH3D19Q5HYK7 790 aa21.07■□□□□ 0.96
USP39-202ENST00000409025 SNRNP48Q6IEG0 339 aaKnown RBP21.07■□□□□ 0.96
USP39-202ENST00000409025 DPY19L2Q6NUT2 758 aa21.07■□□□□ 0.96
USP39-202ENST00000409025 PPP1R3FQ6ZSY5 799 aaPredicted RBP21.07■□□□□ 0.96
USP39-202ENST00000409025 TPH2Q8IWU9 490 aa21.07■□□□□ 0.96
USP39-202ENST00000409025 CNOT6LQ96LI5 555 aaKnown RBP21.07■□□□□ 0.96
USP39-202ENST00000409025 C16orf45Q96MC5 204 aaPredicted RBP21.07■□□□□ 0.96
USP39-202ENST00000409025 COL11A1P12107 1806 aaPredicted RBP21.07■□□□□ 0.96
USP39-202ENST00000409025 USP27XA6NNY8 438 aa21.06■□□□□ 0.96
USP39-202ENST00000409025 TERF1P54274 439 aa21.06■□□□□ 0.96
USP39-202ENST00000409025 CACNB1Q02641 598 aaPredicted RBP21.06■□□□□ 0.96
USP39-202ENST00000409025 RAD51AP2Q09MP3 1159 aa21.06■□□□□ 0.96
USP39-202ENST00000409025 GIT2Q14161 759 aa21.06■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms