RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 TMUB1Q9BVT8 246 aa10.58□□□□□ -0.72
VPS53-203ENST00000401468 AMNQ9BXJ7 453 aa10.58□□□□□ -0.72
VPS53-203ENST00000401468 ACAD9Q9H845 621 aa10.58□□□□□ -0.72
VPS53-203ENST00000401468 PDLIM7Q9NR12 457 aa10.58□□□□□ -0.72
VPS53-203ENST00000401468 NAP1L2Q9ULW6 460 aaPredicted RBP10.58□□□□□ -0.72
VPS53-203ENST00000401468 STXBP5LQ9Y2K9 1186 aa10.58□□□□□ -0.72
VPS53-203ENST00000401468 TANC1Q9C0D5 1861 aa10.57□□□□□ -0.72
VPS53-203ENST00000401468 ESYT2A0FGR8 921 aa10.57□□□□□ -0.72
VPS53-203ENST00000401468 PTPDC1A2A3K4 754 aa10.57□□□□□ -0.72
VPS53-203ENST00000401468 OPLAHO14841 1288 aa10.57□□□□□ -0.72
VPS53-203ENST00000401468 ADAMTS4O75173 837 aa10.57□□□□□ -0.72
VPS53-203ENST00000401468 DEXIO95424 95 aa10.57□□□□□ -0.72
VPS53-203ENST00000401468 SCG2P13521 617 aa10.57□□□□□ -0.72
VPS53-203ENST00000401468 AKR1A1P14550 325 aa10.57□□□□□ -0.72
VPS53-203ENST00000401468 EPHB4P54760 987 aa10.57□□□□□ -0.72
VPS53-203ENST00000401468 HMGN5P82970 282 aaKnown RBP10.57□□□□□ -0.72
VPS53-203ENST00000401468 SSRP1Q08945 709 aaKnown RBP10.57□□□□□ -0.72
VPS53-203ENST00000401468 ACVR2BQ13705 512 aa10.57□□□□□ -0.72
VPS53-203ENST00000401468 SHHQ15465 462 aa10.57□□□□□ -0.72
VPS53-203ENST00000401468 WWC2Q6AWC2 1192 aa10.57□□□□□ -0.72
VPS53-203ENST00000401468 FBXO11Q86XK2 927 aa10.57□□□□□ -0.72
VPS53-203ENST00000401468 TRIM22Q8IYM9 498 aa10.57□□□□□ -0.72
VPS53-203ENST00000401468 DEFB123Q8N688 67 aa10.57□□□□□ -0.72
VPS53-203ENST00000401468 SAMD3Q8N6K7 520 aa10.57□□□□□ -0.72
VPS53-203ENST00000401468 CHST13Q8NET6 341 aa10.57□□□□□ -0.72
VPS53-203ENST00000401468 VTI1AQ96AJ9 217 aa10.57□□□□□ -0.72
VPS53-203ENST00000401468 LBHD1Q9BQE6 289 aaPredicted RBP10.57□□□□□ -0.72
VPS53-203ENST00000401468 SH3GLB2Q9NR46 395 aa10.57□□□□□ -0.72
VPS53-203ENST00000401468 BARHL2Q9NY43 387 aa10.57□□□□□ -0.72
VPS53-203ENST00000401468 ABCB11O95342 1321 aa10.57□□□□□ -0.72
VPS53-203ENST00000401468 WDR81Q562E7 1941 aa10.56□□□□□ -0.72
VPS53-203ENST00000401468 SCN10AQ9Y5Y9 1956 aa10.56□□□□□ -0.72
VPS53-203ENST00000401468 A0A1W2PPC1 479 aa10.56□□□□□ -0.72
VPS53-203ENST00000401468 STXBP3O00186 592 aa10.56□□□□□ -0.72
VPS53-203ENST00000401468 GPR37O15354 613 aa10.56□□□□□ -0.72
VPS53-203ENST00000401468 JAK2O60674 1132 aa10.56□□□□□ -0.72
VPS53-203ENST00000401468 CALML3P27482 149 aa10.56□□□□□ -0.72
VPS53-203ENST00000401468 PLA2G5P39877 138 aa10.56□□□□□ -0.72
VPS53-203ENST00000401468 ACLYP53396 1101 aa10.56□□□□□ -0.72
VPS53-203ENST00000401468 BAATQ14032 418 aaPredicted RBP10.56□□□□□ -0.72
VPS53-203ENST00000401468 HSCBQ8IWL3 235 aa10.56□□□□□ -0.72
VPS53-203ENST00000401468 CCDC82Q8N4S0 544 aa10.56□□□□□ -0.72
VPS53-203ENST00000401468 FAM133AQ8N9E0 248 aa10.56□□□□□ -0.72
VPS53-203ENST00000401468 CLEC4DQ8WXI8 215 aa10.56□□□□□ -0.72
VPS53-203ENST00000401468 KATNBL1Q9H079 304 aa10.56□□□□□ -0.72
VPS53-203ENST00000401468 VAT1LQ9HCJ6 419 aa10.56□□□□□ -0.72
VPS53-203ENST00000401468 MAP3K20Q9NYL2 800 aaKnown RBP10.56□□□□□ -0.72
VPS53-203ENST00000401468 CYP39A1Q9NYL5 469 aa10.56□□□□□ -0.72
VPS53-203ENST00000401468 PRKAG2Q9UGJ0 569 aa10.56□□□□□ -0.72
VPS53-203ENST00000401468 SEC63Q9UGP8 760 aaKnown RBP10.56□□□□□ -0.72
VPS53-203ENST00000401468 FAM184BQ9ULE4 1060 aa10.56□□□□□ -0.72
VPS53-203ENST00000401468 PHF24Q9UPV7 400 aa10.56□□□□□ -0.72
VPS53-203ENST00000401468 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.56□□□□□ -0.72
VPS53-203ENST00000401468 CDH23Q9H251 3354 aa10.56□□□□□ -0.72
VPS53-203ENST00000401468 SYNGAP1Q96PV0 1343 aa10.56□□□□□ -0.72
VPS53-203ENST00000401468 TCF20Q9UGU0 1960 aaKnown RBP10.56□□□□□ -0.72
VPS53-203ENST00000401468 TTC28Q96AY4 2481 aa10.55□□□□□ -0.72
VPS53-203ENST00000401468 PIK3CDO00329 1044 aa10.55□□□□□ -0.72
VPS53-203ENST00000401468 ASGR1P07306 291 aa10.55□□□□□ -0.72
VPS53-203ENST00000401468 BMP8BP34820 402 aa10.55□□□□□ -0.72
VPS53-203ENST00000401468 HSD17B4P51659 736 aa10.55□□□□□ -0.72
VPS53-203ENST00000401468 PSMC6P62333 389 aa10.55□□□□□ -0.72
VPS53-203ENST00000401468 NPY5RQ15761 445 aa10.55□□□□□ -0.72
VPS53-203ENST00000401468 GNASQ5JWF2 1037 aa10.55□□□□□ -0.72
VPS53-203ENST00000401468 RNF180Q86T96 592 aa10.55□□□□□ -0.72
VPS53-203ENST00000401468 HOMER1Q86YM7 354 aa10.55□□□□□ -0.72
VPS53-203ENST00000401468 TBC1D5Q92609 795 aa10.55□□□□□ -0.72
VPS53-203ENST00000401468 SLC26A6Q9BXS9 759 aa10.55□□□□□ -0.72
VPS53-203ENST00000401468 PPP1R12CQ9BZL4 782 aa10.55□□□□□ -0.72
VPS53-203ENST00000401468 ZMYND12Q9H0C1 365 aa10.55□□□□□ -0.72
VPS53-203ENST00000401468 STARD7Q9NQZ5 370 aa10.55□□□□□ -0.72
VPS53-203ENST00000401468 ORC3Q9UBD5 711 aaPredicted RBP10.55□□□□□ -0.72
VPS53-203ENST00000401468 FBXO40Q9UH90 709 aa10.55□□□□□ -0.72
VPS53-203ENST00000401468 DIS3Q9Y2L1 958 aaKnown RBP10.55□□□□□ -0.72
VPS53-203ENST00000401468 MRPL11Q9Y3B7 192 aaKnown RBP10.55□□□□□ -0.72
VPS53-203ENST00000401468 PCDHA1Q9Y5I3 950 aa10.55□□□□□ -0.72
VPS53-203ENST00000401468 hCG_1642624A0A1W2PR95 340 aa10.54□□□□□ -0.72
VPS53-203ENST00000401468 M0R2N6 131 aa10.54□□□□□ -0.72
VPS53-203ENST00000401468 CTAGE5O15320 804 aa10.54□□□□□ -0.72
VPS53-203ENST00000401468 SORBS3O60504 671 aa10.54□□□□□ -0.72
VPS53-203ENST00000401468 NR1I2O75469 434 aa10.54□□□□□ -0.72
VPS53-203ENST00000401468 CLTBP09497 229 aa10.54□□□□□ -0.72
VPS53-203ENST00000401468 SMPD1P17405 629 aa10.54□□□□□ -0.72
VPS53-203ENST00000401468 CLK2P49760 499 aaKnown RBP10.54□□□□□ -0.72
VPS53-203ENST00000401468 CHMP4BP1P59074 171 aa10.54□□□□□ -0.72
VPS53-203ENST00000401468 TNFAIP2Q03169 654 aa10.54□□□□□ -0.72
VPS53-203ENST00000401468 CXCL17Q6UXB2 119 aa10.54□□□□□ -0.72
VPS53-203ENST00000401468 MAMDC4Q6UXC1 1216 aa10.54□□□□□ -0.72
VPS53-203ENST00000401468 GPIHBP1Q8IV16 184 aa10.54□□□□□ -0.72
VPS53-203ENST00000401468 DAGLBQ8NCG7 672 aa10.54□□□□□ -0.72
VPS53-203ENST00000401468 PIBF1Q8WXW3 757 aa10.54□□□□□ -0.72
VPS53-203ENST00000401468 WASF1Q92558 559 aa10.54□□□□□ -0.72
VPS53-203ENST00000401468 COPS5Q92905 334 aa10.54□□□□□ -0.72
VPS53-203ENST00000401468 AIFM3Q96NN9 605 aa10.54□□□□□ -0.72
VPS53-203ENST00000401468 PHF20Q9BVI0 1012 aa10.54□□□□□ -0.72
VPS53-203ENST00000401468 RBM19Q9Y4C8 960 aaKnown RBP10.54□□□□□ -0.72
VPS53-203ENST00000401468 CHD9Q3L8U1 2897 aa10.54□□□□□ -0.72
VPS53-203ENST00000401468 FRMPD4Q14CM0 1322 aa10.54□□□□□ -0.72
VPS53-203ENST00000401468 UMODL1Q5DID0 1318 aa10.54□□□□□ -0.72
VPS53-203ENST00000401468 RNF223E7ERA6 249 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms