RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 ALS2CLQ60I27 953 aa23.09■■□□□ 1.29
CTCF-202ENST00000401394 GJB7Q6PEY0 223 aa23.09■■□□□ 1.29
CTCF-202ENST00000401394 AK8Q96MA6 479 aa23.09■■□□□ 1.29
CTCF-202ENST00000401394 INPP4AQ96PE3 977 aaPredicted RBP23.09■■□□□ 1.29
CTCF-202ENST00000401394 CELF4Q9BZC1 486 aaKnown RBP23.09■■□□□ 1.29
CTCF-202ENST00000401394 STAT3P40763 770 aa23.09■■□□□ 1.29
CTCF-202ENST00000401394 FNTAP49354 379 aa23.09■■□□□ 1.29
CTCF-202ENST00000401394 RAD54LQ92698 747 aa23.09■■□□□ 1.29
CTCF-202ENST00000401394 JPH2Q9BR39 696 aaPredicted RBP23.09■■□□□ 1.29
CTCF-202ENST00000401394 PJA2O43164 708 aa23.08■■□□□ 1.29
CTCF-202ENST00000401394 CASP5P51878 434 aa23.08■■□□□ 1.29
CTCF-202ENST00000401394 UAP1Q16222 522 aaPredicted RBP23.08■■□□□ 1.29
CTCF-202ENST00000401394 SLC9C1Q4G0N8 1177 aa23.08■■□□□ 1.29
CTCF-202ENST00000401394 TTBK2Q6IQ55 1244 aa23.08■■□□□ 1.29
CTCF-202ENST00000401394 CCDC84Q86UT8 332 aaPredicted RBP23.08■■□□□ 1.29
CTCF-202ENST00000401394 RAD21O60216 631 aa23.08■■□□□ 1.29
CTCF-202ENST00000401394 CEP104O60308 925 aa23.08■■□□□ 1.29
CTCF-202ENST00000401394 EPB41P11171 864 aaKnown RBP23.08■■□□□ 1.29
CTCF-202ENST00000401394 TAL1P17542 331 aaPredicted RBP23.08■■□□□ 1.29
CTCF-202ENST00000401394 SLC30A10Q6XR72 485 aa23.08■■□□□ 1.29
CTCF-202ENST00000401394 GUF1Q8N442 669 aaKnown RBP23.08■■□□□ 1.29
CTCF-202ENST00000401394 AJAP1Q9UKB5 411 aaPredicted RBP23.08■■□□□ 1.29
CTCF-202ENST00000401394 ECHS1P30084 290 aa23.07■■□□□ 1.28
CTCF-202ENST00000401394 PTK2Q05397 1052 aa23.07■■□□□ 1.28
CTCF-202ENST00000401394 MCTP2Q6DN12 878 aa23.07■■□□□ 1.28
CTCF-202ENST00000401394 SEC63Q9UGP8 760 aaKnown RBP23.07■■□□□ 1.28
CTCF-202ENST00000401394 LAD1O00515 517 aa23.07■■□□□ 1.28
CTCF-202ENST00000401394 KLHL30Q0D2K2 578 aa23.07■■□□□ 1.28
CTCF-202ENST00000401394 DDB1Q16531 1140 aa23.07■■□□□ 1.28
CTCF-202ENST00000401394 PTGISQ16647 500 aa23.07■■□□□ 1.28
CTCF-202ENST00000401394 MYCBPAPQ8TBZ2 947 aa23.07■■□□□ 1.28
CTCF-202ENST00000401394 DNAJC19Q96DA6 116 aa23.07■■□□□ 1.28
CTCF-202ENST00000401394 CUEDC2Q9H467 287 aa23.07■■□□□ 1.28
CTCF-202ENST00000401394 CNOT8Q9UFF9 292 aaKnown RBP23.07■■□□□ 1.28
CTCF-202ENST00000401394 GNAQP50148 359 aa23.07■■□□□ 1.28
CTCF-202ENST00000401394 NAB2Q15742 525 aa23.07■■□□□ 1.28
CTCF-202ENST00000401394 NR2E1Q9Y466 385 aa23.07■■□□□ 1.28
CTCF-202ENST00000401394 COL4A3BPQ9Y5P4 624 aa23.07■■□□□ 1.28
CTCF-202ENST00000401394 DLEC1Q9Y238 1755 aa23.06■■□□□ 1.28
CTCF-202ENST00000401394 PPP1R37O75864 691 aa23.06■■□□□ 1.28
CTCF-202ENST00000401394 ACTN3Q08043 901 aaPredicted RBP23.06■■□□□ 1.28
CTCF-202ENST00000401394 MEI1Q5TIA1 1274 aa23.06■■□□□ 1.28
CTCF-202ENST00000401394 GBP6Q6ZN66 633 aa23.06■■□□□ 1.28
CTCF-202ENST00000401394 NLRP14Q86W24 1093 aa23.06■■□□□ 1.28
CTCF-202ENST00000401394 MYOCDQ8IZQ8 938 aa23.06■■□□□ 1.28
CTCF-202ENST00000401394 BCS1LQ9Y276 419 aa23.06■■□□□ 1.28
CTCF-202ENST00000401394 MEFVO15553 781 aaPredicted RBP23.06■■□□□ 1.28
CTCF-202ENST00000401394 HSD17B3P37058 310 aa23.06■■□□□ 1.28
CTCF-202ENST00000401394 ITIH3Q06033 890 aa23.06■■□□□ 1.28
CTCF-202ENST00000401394 HAS1Q92839 578 aa23.06■■□□□ 1.28
CTCF-202ENST00000401394 EPN3Q9H201 632 aa23.06■■□□□ 1.28
CTCF-202ENST00000401394 PANK4Q9NVE7 773 aa23.06■■□□□ 1.28
CTCF-202ENST00000401394 AMACRQ9UHK6 382 aa23.06■■□□□ 1.28
CTCF-202ENST00000401394 ATP6V0A2Q9Y487 856 aa23.06■■□□□ 1.28
CTCF-202ENST00000401394 MEIS1O00470 390 aa23.05■■□□□ 1.28
CTCF-202ENST00000401394 PAK2Q13177 524 aa23.05■■□□□ 1.28
CTCF-202ENST00000401394 ITGB3BPQ13352 177 aaPredicted RBP23.05■■□□□ 1.28
CTCF-202ENST00000401394 FAM182BQ5T319 152 aa23.05■■□□□ 1.28
CTCF-202ENST00000401394 UBAP2Q5T6F2 1119 aaKnown RBP23.05■■□□□ 1.28
CTCF-202ENST00000401394 ZNF571Q7Z3V5 609 aaPredicted RBP23.05■■□□□ 1.28
CTCF-202ENST00000401394 NBPF5PQ86XG9 351 aaPredicted RBP23.05■■□□□ 1.28
CTCF-202ENST00000401394 ATP6V1G3Q96LB4 118 aa23.05■■□□□ 1.28
CTCF-202ENST00000401394 KIAA1024Q9UPX6 916 aa23.05■■□□□ 1.28
CTCF-202ENST00000401394 POTEB3A0JP26 581 aa23.05■■□□□ 1.28
CTCF-202ENST00000401394 TMCO5BA8MYB1 307 aa23.05■■□□□ 1.28
CTCF-202ENST00000401394 POTECB2RU33 542 aa23.05■■□□□ 1.28
CTCF-202ENST00000401394 PPP1R11O60927 126 aaPredicted RBP23.05■■□□□ 1.28
CTCF-202ENST00000401394 PICALMQ13492 652 aa23.05■■□□□ 1.28
CTCF-202ENST00000401394 POTEBQ6S5H4 581 aa23.05■■□□□ 1.28
CTCF-202ENST00000401394 MDM1Q8TC05 714 aa23.05■■□□□ 1.28
CTCF-202ENST00000401394 DPH5Q9H2P9 285 aa23.05■■□□□ 1.28
CTCF-202ENST00000401394 GNA11P29992 359 aa23.04■■□□□ 1.28
CTCF-202ENST00000401394 MDH1P40925 334 aaKnown RBP23.04■■□□□ 1.28
CTCF-202ENST00000401394 SF3B2Q13435 895 aaKnown RBP23.04■■□□□ 1.28
CTCF-202ENST00000401394 CDC37Q16543 378 aaPredicted RBP23.04■■□□□ 1.28
CTCF-202ENST00000401394 KDM7AQ6ZMT4 941 aa23.04■■□□□ 1.28
CTCF-202ENST00000401394 USP38Q8NB14 1042 aa23.04■■□□□ 1.28
CTCF-202ENST00000401394 UTP18Q9Y5J1 556 aaKnown RBP eCLIP23.04■■□□□ 1.28
CTCF-202ENST00000401394 BTDP43251 543 aa23.04■■□□□ 1.28
CTCF-202ENST00000401394 MKRN4PQ13434 485 aaPredicted RBP23.04■■□□□ 1.28
CTCF-202ENST00000401394 DAPK3O43293 454 aa23.04■■□□□ 1.28
CTCF-202ENST00000401394 MARCH6O60337 910 aa23.04■■□□□ 1.28
CTCF-202ENST00000401394 KIAA0754O94854 1291 aa23.04■■□□□ 1.28
CTCF-202ENST00000401394 SERPING1P05155 500 aa23.04■■□□□ 1.28
CTCF-202ENST00000401394 SLC18A3Q16572 532 aa23.04■■□□□ 1.28
CTCF-202ENST00000401394 ZCWPW2Q504Y3 356 aa23.04■■□□□ 1.28
CTCF-202ENST00000401394 HERC4Q5GLZ8 1057 aaPredicted RBP23.04■■□□□ 1.28
CTCF-202ENST00000401394 FAM26FQ5R3K3 315 aa23.04■■□□□ 1.28
CTCF-202ENST00000401394 KRT79Q5XKE5 535 aa23.04■■□□□ 1.28
CTCF-202ENST00000401394 UBLCP1Q8WVY7 318 aaPredicted RBP23.04■■□□□ 1.28
CTCF-202ENST00000401394 ANKS1AQ92625 1134 aa23.04■■□□□ 1.28
CTCF-202ENST00000401394 NLRP3Q96P20 1036 aa23.04■■□□□ 1.28
CTCF-202ENST00000401394 MYH1P12882 1939 aa23.04■■□□□ 1.28
CTCF-202ENST00000401394 CASZ1Q86V15 1759 aa23.03■■□□□ 1.28
CTCF-202ENST00000401394 SHROOM1Q2M3G4 852 aaPredicted RBP23.03■■□□□ 1.28
CTCF-202ENST00000401394 SUGP1Q8IWZ8 645 aaKnown RBP23.03■■□□□ 1.28
CTCF-202ENST00000401394 SCFD1Q8WVM8 642 aa23.03■■□□□ 1.28
CTCF-202ENST00000401394 CEP72Q9P209 647 aa23.03■■□□□ 1.28
CTCF-202ENST00000401394 ZNF652Q9Y2D9 606 aa23.03■■□□□ 1.28
CTCF-202ENST00000401394 KIAA1551Q9HCM1 1747 aa23.03■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms